Wall clock time and date at job start Mon Mar 30 2020 00:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99876 * 2 1 4 4 C 1.50695 * 109.46669 * 179.97438 * 3 2 1 5 5 N 1.29945 * 126.28978 * 89.97761 * 4 3 2 6 6 O 1.21296 * 110.25563 * 179.97438 * 5 4 3 7 7 C 1.33645 * 109.81035 * 359.97438 * 6 5 4 8 8 C 1.50700 * 126.55392 * 179.97438 * 7 6 5 9 9 O 1.45209 * 109.46811 * 270.02844 * 8 7 6 10 10 C 1.34226 * 116.99600 * 180.02562 * 9 8 7 11 11 O 1.20825 * 120.00359 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99822 * 179.97438 * 10 9 8 13 13 H 1.08998 * 109.46456 * 299.99150 * 12 10 9 14 14 C 1.52997 * 109.47238 * 59.99316 * 12 10 9 15 15 C 1.50697 * 109.47178 * 179.97438 * 12 10 9 16 16 H 1.07998 * 120.00039 * 359.97438 * 15 12 10 17 17 C 1.37880 * 119.99815 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99524 * 179.97438 * 17 15 12 19 19 Si 1.86794 * 120.00267 * 359.97438 * 17 15 12 20 20 H 1.48506 * 109.46589 * 89.99875 * 19 17 15 21 21 H 1.48490 * 109.47303 * 209.99928 * 19 17 15 22 22 H 1.48497 * 109.46869 * 330.00523 * 19 17 15 23 23 N 1.31133 * 106.89753 * 0.22823 * 7 6 5 24 24 H 1.08993 * 109.46795 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47048 * 300.00437 * 1 2 3 26 26 H 1.09004 * 109.46595 * 60.00041 * 1 2 3 27 27 H 1.08998 * 109.47356 * 59.99936 * 3 2 1 28 28 H 1.09006 * 109.46683 * 299.99897 * 3 2 1 29 29 H 1.08996 * 109.47509 * 150.02762 * 8 7 6 30 30 H 1.09002 * 109.46871 * 30.01915 * 8 7 6 31 31 H 1.09002 * 109.47153 * 180.02562 * 14 12 10 32 32 H 1.09001 * 109.46832 * 60.00314 * 14 12 10 33 33 H 1.09004 * 109.47261 * 300.00295 * 14 12 10 34 34 H 0.97001 * 119.99599 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2796 1.1251 -1.0464 6 8 5.4416 1.0337 -0.7109 7 6 5.5290 1.0284 0.6227 8 6 6.7918 0.9291 1.4391 9 8 7.0892 -0.4676 1.7024 10 6 8.1901 -0.7306 2.4239 11 8 8.8826 0.1761 2.8218 12 6 8.5625 -2.1568 2.7376 13 1 7.7581 -2.6260 3.3041 14 6 8.7831 -2.9251 1.4331 15 6 9.8298 -2.1774 3.5527 16 1 10.3171 -1.2505 3.8168 17 6 10.3672 -3.3797 3.9613 18 7 11.4735 -3.3976 4.6723 19 14 9.5239 -4.9828 3.5052 20 1 10.0559 -5.4700 2.2072 21 1 9.7844 -5.9963 4.5587 22 1 8.0611 -4.7564 3.3869 23 7 4.3054 1.1207 1.0851 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8465 0.8899 28 1 1.6886 1.8464 -0.8901 29 1 6.6563 1.4560 2.3835 30 1 7.6174 1.3785 0.8873 31 1 9.0520 -3.9568 1.6600 32 1 9.5875 -2.4558 0.8666 33 1 7.8666 -2.9102 0.8431 34 1 11.8513 -4.2434 4.9601 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118404859.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:50 Heat of formation + Delta-G solvation = -47.609586 kcal Electronic energy + Delta-G solvation = -20094.177578 eV Core-core repulsion = 16611.005813 eV Total energy + Delta-G solvation = -3483.171765 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.87478 -39.97411 -38.43544 -36.41243 -35.90546 -34.08314 -33.29746 -31.39615 -29.13412 -28.27524 -26.33545 -25.24197 -24.01315 -23.38776 -21.74070 -20.08299 -18.42146 -17.95829 -17.17979 -16.77464 -16.63864 -16.30447 -16.10556 -15.90445 -15.65104 -14.81628 -14.12673 -13.62689 -13.23235 -13.00730 -12.79400 -12.65167 -12.42762 -12.28893 -12.23508 -11.75044 -11.60897 -11.34493 -11.12419 -10.75338 -10.54267 -10.48229 -10.34840 -10.23570 -9.73712 -9.40684 -9.23480 -8.68542 -6.16718 -4.20325 0.73383 1.69213 2.38510 2.94762 3.03233 3.20610 3.29816 3.32463 3.33810 3.66917 3.88348 4.29724 4.51444 4.67185 4.85287 4.91470 4.95191 5.10726 5.12046 5.13929 5.27658 5.37914 5.61965 5.66020 6.09624 6.24259 6.32334 6.56125 6.62287 6.83315 7.03243 7.39914 7.84964 8.31409 8.50827 8.97546 9.39511 10.95330 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.027212 B = 0.003824 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.711530 B = 7321.314959 C = 7917.744779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.157 3.843 4 C 0.165 3.835 5 N -0.361 5.361 6 O 0.097 5.903 7 C 0.193 3.807 8 C 0.156 3.844 9 O -0.361 6.361 10 C 0.481 3.519 11 O -0.493 6.493 12 C 0.029 3.971 13 H 0.067 0.933 14 C -0.148 4.148 15 C -0.521 4.521 16 H 0.096 0.904 17 C 0.077 3.923 18 N -0.889 5.889 19 Si 0.882 3.118 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.264 1.264 23 N -0.449 5.449 24 H 0.092 0.908 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.794 8.533 -10.164 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.079 3.921 4 C -0.108 4.108 5 N -0.066 5.066 6 O 0.033 5.967 7 C -0.028 4.028 8 C 0.080 3.920 9 O -0.279 6.279 10 C 0.324 3.676 11 O -0.378 6.378 12 C 0.009 3.991 13 H 0.085 0.915 14 C -0.205 4.205 15 C -0.559 4.559 16 H 0.114 0.886 17 C -0.126 4.126 18 N -0.526 5.526 19 Si 0.711 3.289 20 H -0.202 1.202 21 H -0.220 1.220 22 H -0.189 1.189 23 N -0.185 5.185 24 H 0.111 0.889 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.136 0.864 30 H 0.127 0.873 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.993 8.597 -10.440 23.316 hybrid contribution -0.375 -0.643 -0.170 0.764 sum -19.368 7.954 -10.609 23.472 Atomic orbital electron populations 1.22822 0.79557 1.03555 1.00388 1.87973 1.20660 1.25957 1.95538 1.20391 0.82334 0.86352 1.02986 1.25357 0.99248 1.02460 0.83727 1.74643 0.89620 1.18516 1.23801 1.85337 1.22342 1.64190 1.24802 1.28270 0.96161 0.96537 0.81845 1.20902 0.88221 0.84606 0.98299 1.86667 1.46717 1.25771 1.68751 1.24706 0.75645 0.94427 0.72834 1.90582 1.50529 1.47650 1.48992 1.19199 1.00023 0.83910 0.95960 0.91511 1.22123 1.00703 1.00252 0.97450 1.20889 1.06105 0.96149 1.32719 0.88595 1.24895 0.94611 0.98669 0.94413 1.69860 1.19641 1.26836 1.36278 0.86939 0.80696 0.83658 0.77582 1.20151 1.21996 1.18893 1.71908 0.99587 1.17905 1.29079 0.88932 0.93399 0.93605 0.89567 0.90144 0.86425 0.87267 0.92829 0.92125 0.93629 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.34 10.69 -35.23 -0.38 -4.72 16 3 C 0.16 1.55 6.56 36.00 0.24 1.78 16 4 C 0.17 2.21 7.85 -156.37 -1.23 0.98 16 5 N -0.36 -5.08 12.16 30.90 0.38 -4.71 16 6 O 0.10 1.34 11.31 18.10 0.20 1.55 16 7 C 0.19 2.66 8.15 -13.06 -0.11 2.55 16 8 C 0.16 2.11 6.09 36.01 0.22 2.33 16 9 O -0.36 -6.36 10.11 -39.25 -0.40 -6.76 16 10 C 0.48 10.12 7.25 36.01 0.26 10.38 16 11 O -0.49 -11.40 15.21 -18.75 -0.29 -11.69 16 12 C 0.03 0.66 2.33 -92.92 -0.22 0.44 16 13 H 0.07 1.50 7.20 -51.93 -0.37 1.13 16 14 C -0.15 -3.04 8.60 37.16 0.32 -2.72 16 15 C -0.52 -14.45 8.95 -34.44 -0.31 -14.76 16 16 H 0.10 2.98 7.00 -52.49 -0.37 2.61 16 17 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 18 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 19 Si 0.88 20.76 24.38 -169.99 -4.14 16.61 16 20 H -0.27 -6.25 6.87 56.52 0.39 -5.86 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.26 -5.86 6.53 56.52 0.37 -5.49 16 23 N -0.45 -6.55 11.55 -9.87 -0.11 -6.66 16 24 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.12 1.47 8.13 -51.93 -0.42 1.05 16 30 H 0.11 1.25 8.13 -51.93 -0.42 0.82 16 31 H 0.05 1.14 3.28 -51.93 -0.17 0.97 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.04 0.81 8.11 -51.93 -0.42 0.39 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 301.12 15.07 4.54 4.54 Total: -1.00 -32.96 301.12 -3.13 -36.09 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -3.89 Total: -2.84 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 0.19 Total: 4.39 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 1.04 Total: -37.17 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.85 Total: -21.61 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.14 Total: 16.61 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.96 -3.13 -36.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118404859.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.520 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds