Wall clock time and date at job start Mon Mar 30 2020 00:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99876 * 2 1 4 4 C 1.50695 * 109.46669 * 179.97438 * 3 2 1 5 5 N 1.29945 * 126.28978 * 89.97761 * 4 3 2 6 6 O 1.21296 * 110.25563 * 179.97438 * 5 4 3 7 7 C 1.33645 * 109.81035 * 359.97438 * 6 5 4 8 8 C 1.50700 * 126.55392 * 179.97438 * 7 6 5 9 9 O 1.45209 * 109.46811 * 270.02844 * 8 7 6 10 10 C 1.34226 * 116.99600 * 180.02562 * 9 8 7 11 11 O 1.20825 * 120.00359 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99822 * 179.97438 * 10 9 8 13 13 H 1.08998 * 109.46456 * 299.99150 * 12 10 9 14 14 C 1.52997 * 109.47238 * 59.99316 * 12 10 9 15 15 C 1.50697 * 109.47178 * 179.97438 * 12 10 9 16 16 H 1.07998 * 120.00039 * 359.97438 * 15 12 10 17 17 C 1.37880 * 119.99815 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99524 * 179.97438 * 17 15 12 19 19 Si 1.86794 * 120.00267 * 359.97438 * 17 15 12 20 20 H 1.48506 * 109.46589 * 89.99875 * 19 17 15 21 21 H 1.48490 * 109.47303 * 209.99928 * 19 17 15 22 22 H 1.48497 * 109.46869 * 330.00523 * 19 17 15 23 23 N 1.31133 * 106.89753 * 0.22823 * 7 6 5 24 24 H 1.08993 * 109.46795 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47048 * 300.00437 * 1 2 3 26 26 H 1.09004 * 109.46595 * 60.00041 * 1 2 3 27 27 H 1.08998 * 109.47356 * 59.99936 * 3 2 1 28 28 H 1.09006 * 109.46683 * 299.99897 * 3 2 1 29 29 H 1.08996 * 109.47509 * 150.02762 * 8 7 6 30 30 H 1.09002 * 109.46871 * 30.01915 * 8 7 6 31 31 H 1.09002 * 109.47153 * 180.02562 * 14 12 10 32 32 H 1.09001 * 109.46832 * 60.00314 * 14 12 10 33 33 H 1.09004 * 109.47261 * 300.00295 * 14 12 10 34 34 H 0.97001 * 119.99599 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2796 1.1251 -1.0464 6 8 5.4416 1.0337 -0.7109 7 6 5.5290 1.0284 0.6227 8 6 6.7918 0.9291 1.4391 9 8 7.0892 -0.4676 1.7024 10 6 8.1901 -0.7306 2.4239 11 8 8.8826 0.1761 2.8218 12 6 8.5625 -2.1568 2.7376 13 1 7.7581 -2.6260 3.3041 14 6 8.7831 -2.9251 1.4331 15 6 9.8298 -2.1774 3.5527 16 1 10.3171 -1.2505 3.8168 17 6 10.3672 -3.3797 3.9613 18 7 11.4735 -3.3976 4.6723 19 14 9.5239 -4.9828 3.5052 20 1 10.0559 -5.4700 2.2072 21 1 9.7844 -5.9963 4.5587 22 1 8.0611 -4.7564 3.3869 23 7 4.3054 1.1207 1.0851 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8465 0.8899 28 1 1.6886 1.8464 -0.8901 29 1 6.6563 1.4560 2.3835 30 1 7.6174 1.3785 0.8873 31 1 9.0520 -3.9568 1.6600 32 1 9.5875 -2.4558 0.8666 33 1 7.8666 -2.9102 0.8431 34 1 11.8513 -4.2434 4.9601 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118404859.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:50 Heat of formation + Delta-G solvation = -73.162464 kcal Electronic energy + Delta-G solvation = -20095.285634 eV Core-core repulsion = 16611.005813 eV Total energy + Delta-G solvation = -3484.279821 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.92450 -41.56080 -39.15095 -37.88882 -37.00039 -35.97426 -34.41113 -33.38225 -29.95361 -29.38610 -27.16814 -26.94734 -25.45069 -24.69544 -22.78840 -21.73824 -19.52189 -19.08584 -18.90793 -18.12342 -17.95911 -17.44006 -17.33297 -16.90362 -16.67230 -16.37564 -15.63118 -15.10927 -14.50902 -14.29115 -14.12528 -13.90520 -13.63098 -13.43289 -13.33932 -13.14334 -12.90770 -12.61092 -12.42128 -12.40623 -12.23982 -11.90752 -11.55440 -11.46504 -11.27662 -11.08414 -10.86589 -10.76181 -8.30413 -6.40461 -0.35366 0.65869 1.26730 1.28964 1.37664 1.42288 1.52400 1.95898 2.23433 2.32876 2.65402 3.03187 3.13425 3.57930 3.87721 3.94407 3.98763 4.18387 4.29558 4.37420 4.43016 4.46583 4.54539 4.55409 4.63395 4.71668 4.84284 4.97236 5.20574 5.36666 5.44547 5.96305 6.21369 6.72281 6.80686 6.85500 7.24370 8.85921 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.027212 B = 0.003824 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.711530 B = 7321.314959 C = 7917.744779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.154 3.846 4 C 0.163 3.837 5 N -0.373 5.373 6 O 0.096 5.904 7 C 0.194 3.806 8 C 0.154 3.846 9 O -0.357 6.357 10 C 0.492 3.508 11 O -0.523 6.523 12 C 0.020 3.980 13 H 0.079 0.921 14 C -0.143 4.143 15 C -0.531 4.531 16 H 0.045 0.955 17 C 0.019 3.981 18 N -0.943 5.943 19 Si 0.949 3.051 20 H -0.258 1.258 21 H -0.296 1.296 22 H -0.236 1.236 23 N -0.466 5.466 24 H 0.097 0.903 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.377 7.969 -11.661 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C 0.077 3.923 4 C -0.110 4.110 5 N -0.079 5.079 6 O 0.033 5.967 7 C -0.026 4.026 8 C 0.079 3.921 9 O -0.274 6.274 10 C 0.336 3.664 11 O -0.410 6.410 12 C 0.001 3.999 13 H 0.097 0.903 14 C -0.200 4.200 15 C -0.568 4.568 16 H 0.063 0.937 17 C -0.179 4.179 18 N -0.582 5.582 19 Si 0.774 3.226 20 H -0.183 1.183 21 H -0.224 1.224 22 H -0.160 1.160 23 N -0.202 5.202 24 H 0.115 0.885 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.612 8.052 -11.970 25.984 hybrid contribution 0.367 -0.324 0.293 0.570 sum -21.245 7.728 -11.677 25.444 Atomic orbital electron populations 1.23039 0.77404 1.04444 1.01938 1.87908 1.23064 1.26820 1.95864 1.20679 0.80195 0.86363 1.05086 1.26044 1.00762 1.01200 0.83039 1.74641 0.89752 1.19256 1.24276 1.85325 1.22449 1.64253 1.24674 1.28182 0.95988 0.96555 0.81922 1.21211 0.89112 0.82365 0.99431 1.86558 1.44810 1.28443 1.67589 1.24158 0.76048 0.93468 0.72759 1.90580 1.51760 1.48314 1.50324 1.19113 0.97941 0.86026 0.96862 0.90306 1.22039 1.02434 0.99339 0.96190 1.21008 1.07872 0.94425 1.33521 0.93684 1.25830 0.95117 1.02879 0.94049 1.70025 1.21855 1.28093 1.38195 0.85857 0.81015 0.78061 0.77702 1.18328 1.22398 1.15973 1.71930 1.00051 1.18333 1.29874 0.88464 0.92013 0.91871 0.87691 0.87789 0.85267 0.84909 0.93092 0.92286 0.90200 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -8.62 10.69 -148.98 -1.59 -10.21 16 3 C 0.15 2.67 6.56 71.23 0.47 3.14 16 4 C 0.16 4.06 7.85 138.46 1.09 5.14 16 5 N -0.37 -9.90 12.16 -60.32 -0.73 -10.63 16 6 O 0.10 2.48 11.31 74.82 0.85 3.33 16 7 C 0.19 5.01 8.15 88.38 0.72 5.73 16 8 C 0.15 3.90 6.09 71.24 0.43 4.33 16 9 O -0.36 -11.85 10.11 -51.38 -0.52 -12.37 16 10 C 0.49 20.25 7.25 71.24 0.52 20.76 16 11 O -0.52 -24.36 15.21 21.97 0.33 -24.03 16 12 C 0.02 0.90 2.33 -12.29 -0.03 0.87 16 13 H 0.08 3.35 7.20 -2.39 -0.02 3.34 16 14 C -0.14 -5.47 8.60 71.98 0.62 -4.85 16 15 C -0.53 -30.00 8.95 25.60 0.23 -29.77 16 16 H 0.04 2.94 7.00 -2.91 -0.02 2.92 16 17 C 0.02 1.10 5.45 84.65 0.46 1.56 16 18 N -0.94 -58.01 13.96 21.45 0.30 -57.71 16 19 Si 0.95 41.82 24.38 68.60 1.67 43.49 16 20 H -0.26 -10.62 6.87 99.48 0.68 -9.94 16 21 H -0.30 -13.16 7.11 99.48 0.71 -12.46 16 22 H -0.24 -9.31 6.53 99.48 0.65 -8.66 16 23 N -0.47 -12.77 11.55 -303.19 -3.50 -16.28 16 24 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.13 3.03 8.13 -2.39 -0.02 3.01 16 30 H 0.13 2.77 8.13 -2.39 -0.02 2.75 16 31 H 0.05 1.98 3.28 -2.39 -0.01 1.97 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.08 2.51 8.11 -2.38 -0.02 2.49 16 34 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -72.81 301.12 3.61 -69.21 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.05 Total: 6.74 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 5.75 Total: 8.47 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -3.94 Total: -84.62 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -0.93 Total: -43.28 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.67 Total: 43.49 kcal Total: -72.81 3.61 -69.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118404859.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.956 kcal (2) G-P(sol) polarization free energy of solvation -72.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds