Wall clock time and date at job start Mon Mar 30 2020 01:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99452 * 2 1 4 4 C 1.53002 * 109.47011 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46858 * 63.57121 * 4 3 2 6 6 C 1.36779 * 120.00113 * 263.53179 * 5 4 3 7 7 H 1.08000 * 119.99732 * 139.28985 * 6 5 4 8 8 C 1.39118 * 120.00064 * 319.28576 * 6 5 4 9 9 N 1.31320 * 119.99827 * 164.83884 * 8 6 5 10 10 Si 1.86805 * 120.00087 * 344.84101 * 8 6 5 11 11 H 1.48502 * 109.46997 * 92.13505 * 10 8 6 12 12 H 1.48498 * 109.46896 * 212.13365 * 10 8 6 13 13 H 1.48493 * 109.46888 * 332.13579 * 10 8 6 14 14 C 1.34776 * 119.99578 * 83.53253 * 5 4 3 15 15 O 1.21542 * 120.00077 * 5.10246 * 14 5 4 16 16 C 1.48166 * 119.99572 * 185.09580 * 14 5 4 17 17 C 1.42339 * 126.94648 * 174.41438 * 16 14 5 18 18 C 1.35284 * 103.92491 * 179.85489 * 17 16 14 19 19 C 1.50694 * 126.65441 * 180.14700 * 18 17 16 20 20 O 1.42904 * 109.47051 * 90.33232 * 19 18 17 21 21 O 1.34036 * 106.69035 * 0.40771 * 18 17 16 22 22 N 1.20909 * 111.86095 * 359.71748 * 21 18 17 23 23 H 1.09004 * 109.46875 * 299.99509 * 1 2 3 24 24 H 1.08992 * 109.47317 * 59.99523 * 1 2 3 25 25 H 1.09000 * 109.46878 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47302 * 60.00835 * 3 2 1 27 27 H 1.08999 * 109.47438 * 300.00182 * 3 2 1 28 28 H 1.09001 * 109.47308 * 303.57849 * 4 3 2 29 29 H 1.08994 * 109.47646 * 183.57122 * 4 3 2 30 30 H 0.96998 * 119.99531 * 180.02562 * 9 8 6 31 31 H 1.07999 * 128.03430 * 0.02562 * 17 16 14 32 32 H 1.08997 * 109.47392 * 210.33173 * 19 18 17 33 33 H 1.09001 * 109.47271 * 330.33412 * 19 18 17 34 34 H 0.96695 * 113.99787 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9732 0.5337 -1.2379 6 6 4.2216 -0.8113 -1.2520 7 1 3.9082 -1.4095 -2.0948 8 6 4.8780 -1.4087 -0.1807 9 7 4.8574 -2.7146 -0.0436 10 14 5.7887 -0.3533 1.0628 11 1 4.8790 -0.0174 2.1876 12 1 6.9622 -1.1010 1.5816 13 1 6.2487 0.8975 0.4078 14 6 4.1311 1.2600 -2.3621 15 8 4.0008 2.4679 -2.3286 16 6 4.4637 0.5858 -3.6389 17 6 4.5544 1.1874 -4.9258 18 6 4.8843 0.1607 -5.7426 19 6 5.1129 0.2324 -7.2304 20 8 6.4932 0.4979 -7.4879 21 8 4.9627 -0.9338 -4.9728 22 7 4.7284 -0.6860 -3.8128 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8465 -0.8899 28 1 3.8532 0.5894 0.8553 29 1 3.9786 2.1785 0.0634 30 1 5.3148 -3.1310 0.7035 31 1 4.3989 2.2233 -5.1885 32 1 4.8343 -0.7173 -7.6870 33 1 4.5041 1.0314 -7.6534 34 1 6.7137 0.5571 -8.4276 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118973409.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:04 Heat of formation + Delta-G solvation = -63.559591 kcal Electronic energy + Delta-G solvation = -21281.706767 eV Core-core repulsion = 17797.843358 eV Total energy + Delta-G solvation = -3483.863409 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.96047 -40.83770 -38.68324 -37.86534 -36.86908 -34.87692 -34.05667 -33.29058 -31.15618 -27.55730 -27.36298 -27.10552 -25.52969 -23.88027 -23.17619 -20.78301 -19.42455 -19.02065 -18.14133 -18.02143 -17.90431 -17.59439 -17.05551 -16.46091 -16.27489 -15.92531 -15.61471 -15.44195 -15.12214 -14.54094 -14.45472 -14.30459 -13.67957 -13.40606 -13.20602 -12.96798 -12.77132 -12.52732 -12.29590 -11.83914 -11.75628 -11.33789 -11.28158 -10.98823 -10.85445 -10.55958 -10.54075 -9.83637 -8.47485 -6.11757 0.30604 0.68349 1.14101 1.27168 1.34462 2.07733 2.14019 2.24242 2.34486 2.84479 2.99991 3.32732 3.53895 3.89080 4.00112 4.06041 4.07809 4.24586 4.30394 4.32638 4.45480 4.50207 4.53153 4.65102 4.67333 4.72699 4.79915 5.00132 5.34768 6.03686 6.27901 6.31897 6.84300 6.97860 7.19228 7.39484 7.55247 8.66264 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018663 B = 0.006728 C = 0.005920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.961478 B = 4160.433087 C = 4728.311132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.060 3.940 4 C 0.086 3.914 5 N -0.441 5.441 6 C -0.321 4.321 7 H 0.095 0.905 8 C 0.028 3.972 9 N -0.894 5.894 10 Si 0.926 3.074 11 H -0.247 1.247 12 H -0.282 1.282 13 H -0.270 1.270 14 C 0.536 3.464 15 O -0.603 6.603 16 C -0.044 4.044 17 C -0.172 4.172 18 C -0.053 4.053 19 C 0.169 3.831 20 O -0.590 6.590 21 O 0.117 5.883 22 N -0.318 5.318 23 H 0.060 0.940 24 H 0.041 0.959 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.279 0.721 31 H 0.195 0.805 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.755 6.878 -10.127 12.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.017 4.017 4 C -0.036 4.036 5 N -0.160 5.160 6 C -0.450 4.450 7 H 0.112 0.888 8 C -0.176 4.176 9 N -0.532 5.532 10 Si 0.751 3.249 11 H -0.172 1.172 12 H -0.209 1.209 13 H -0.194 1.194 14 C 0.325 3.675 15 O -0.489 6.489 16 C -0.201 4.201 17 C -0.194 4.194 18 C -0.116 4.116 19 C 0.091 3.909 20 O -0.402 6.402 21 O 0.038 5.962 22 N -0.017 5.017 23 H 0.079 0.921 24 H 0.060 0.940 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.212 0.788 32 H 0.116 0.884 33 H 0.135 0.865 34 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.599 6.101 -8.445 11.022 hybrid contribution 0.158 0.861 0.023 0.876 sum -3.441 6.962 -8.421 11.456 Atomic orbital electron populations 1.22886 0.80157 1.03261 1.00638 1.88131 1.20959 1.27715 1.95418 1.22804 0.92526 0.85146 1.01228 1.22077 0.94938 0.98821 0.87743 1.43612 1.56112 1.08290 1.07994 1.19207 1.36784 0.81193 1.07831 0.88764 1.25923 0.96299 0.96339 0.99002 1.69733 1.41277 1.10695 1.31449 0.86185 0.79075 0.79398 0.80193 1.17230 1.20889 1.19428 1.17352 0.81318 0.85447 0.83354 1.90584 1.58660 1.13281 1.86347 1.23522 1.08488 0.90693 0.97409 1.22649 1.05368 1.02430 0.88989 1.24929 1.03592 0.85275 0.97810 1.20500 0.84256 1.04286 0.81864 1.86505 1.25031 1.95216 1.33407 1.84867 1.63050 1.35179 1.13092 1.74898 1.13472 1.17653 0.95644 0.92127 0.94007 0.89442 0.89422 0.93684 0.90683 0.88492 0.91150 0.78758 0.88443 0.86515 0.73512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -17.29 10.42 -148.98 -1.55 -18.84 16 3 C 0.06 2.35 6.24 71.98 0.45 2.80 16 4 C 0.09 3.90 4.27 86.38 0.37 4.27 16 5 N -0.44 -23.13 2.10 -638.48 -1.34 -24.47 16 6 C -0.32 -18.60 8.35 84.13 0.70 -17.90 16 7 H 0.10 5.99 5.98 -2.91 -0.02 5.97 16 8 C 0.03 1.63 5.37 84.98 0.46 2.08 16 9 N -0.89 -53.47 13.95 21.69 0.30 -53.17 16 10 Si 0.93 44.35 24.81 68.60 1.70 46.05 16 11 H -0.25 -10.74 6.64 99.48 0.66 -10.08 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 H -0.27 -13.08 7.10 99.48 0.71 -12.38 16 14 C 0.54 27.59 7.60 86.88 0.66 28.26 16 15 O -0.60 -30.97 16.61 -3.85 -0.06 -31.03 16 16 C -0.04 -2.09 6.91 42.92 0.30 -1.79 16 17 C -0.17 -6.22 10.93 22.61 0.25 -5.97 16 18 C -0.05 -1.66 7.10 25.00 0.18 -1.48 16 19 C 0.17 2.93 7.60 71.23 0.54 3.47 16 20 O -0.59 -11.13 13.64 -148.98 -2.03 -13.17 16 21 O 0.12 4.69 11.18 71.69 0.80 5.49 16 22 N -0.32 -15.54 8.92 -49.46 -0.44 -15.98 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.08 3.47 3.43 -2.39 -0.01 3.46 16 29 H 0.10 4.09 7.55 -2.39 -0.02 4.07 16 30 H 0.28 15.43 8.31 -92.71 -0.77 14.65 16 31 H 0.20 5.88 8.06 -2.91 -0.02 5.86 16 32 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.19 16 34 H 0.41 2.54 9.12 -74.06 -0.68 1.86 16 Total: -1.00 -79.39 297.30 2.95 -76.44 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.43 Total: 12.88 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: 5.15 Total: 15.80 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -1.48 Total: -93.62 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -2.85 Total: -57.55 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.70 Total: 46.05 kcal Total: -79.39 2.95 -76.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118973409.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.881 kcal (2) G-P(sol) polarization free energy of solvation -79.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds