Wall clock time and date at job start Mon Mar 30 2020 01:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99976 * 2 1 4 4 H 1.48504 * 109.47214 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47466 * 300.00024 * 3 2 1 6 6 H 1.48498 * 109.47204 * 59.99770 * 3 2 1 7 7 C 1.38811 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00397 * 180.02562 * 7 2 1 9 9 N 1.36946 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00005 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47022 * 179.97438 * 11 10 9 13 13 C 1.34782 * 119.99952 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99761 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99703 * 180.02562 * 13 12 11 16 16 N 1.46504 * 109.46603 * 180.02562 * 15 13 12 17 17 C 1.47308 * 126.69390 * 270.29480 * 16 15 13 18 18 C 1.51579 * 103.59774 * 180.02562 * 17 16 15 19 19 O 1.21233 * 127.16311 * 179.97438 * 18 17 16 20 20 N 1.34773 * 105.68013 * 359.65777 * 18 17 16 21 21 C 1.33795 * 111.64536 * 0.22635 * 20 18 17 22 22 O 1.21531 * 123.76756 * 179.97438 * 21 20 18 23 23 H 0.97001 * 120.00064 * 0.02562 * 1 2 3 24 24 H 0.97003 * 119.99305 * 0.02562 * 9 7 2 25 25 H 1.08999 * 109.47099 * 59.99678 * 10 9 7 26 26 H 1.09003 * 109.47235 * 299.99715 * 10 9 7 27 27 H 1.08999 * 109.47438 * 59.99928 * 11 10 9 28 28 H 1.08993 * 109.47410 * 299.99687 * 11 10 9 29 29 H 0.96996 * 120.00258 * 0.02562 * 12 11 10 30 30 H 1.09001 * 109.47164 * 60.00785 * 15 13 12 31 31 H 1.08993 * 109.47070 * 300.00472 * 15 13 12 32 32 H 1.08999 * 110.69646 * 61.50423 * 17 16 15 33 33 H 1.09002 * 110.50179 * 298.56348 * 17 16 15 34 34 H 0.97003 * 124.17604 * 180.26125 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8196 0.0001 12 7 1.7963 -6.0884 -0.0005 13 6 1.1223 -7.2556 0.0004 14 8 -0.0905 -7.2556 0.0013 15 6 1.8759 -8.5607 0.0004 16 7 0.9238 -9.6742 0.0009 17 6 0.3476 -10.3391 1.1823 18 6 -0.5559 -11.4013 0.5882 19 8 -1.2416 -12.1997 1.1900 20 7 -0.4438 -11.2690 -0.7483 21 6 0.4000 -10.2842 -1.0776 22 8 0.6639 -9.9757 -2.2231 23 1 -0.4850 0.8401 -0.0004 24 1 0.3555 -2.3880 -0.0005 25 1 2.6847 -3.7145 0.8894 26 1 2.6846 -3.7146 -0.8906 27 1 0.4367 -4.7621 -0.8896 28 1 0.4375 -4.7618 0.8903 29 1 2.7662 -6.0885 -0.0008 30 1 2.5031 -8.6182 0.8900 31 1 2.5019 -8.6187 -0.8899 32 1 -0.2317 -9.6331 1.7774 33 1 1.1331 -10.7956 1.7845 34 1 -0.9168 -11.8193 -1.3920 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135457790.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:42 Heat of formation + Delta-G solvation = -91.751745 kcal Electronic energy + Delta-G solvation = -19793.075834 eV Core-core repulsion = 16340.282672 eV Total energy + Delta-G solvation = -3452.793161 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.27830 -40.70279 -39.68335 -37.45126 -37.19016 -35.55297 -35.42651 -33.18608 -30.85685 -29.22278 -27.75221 -25.53081 -23.47742 -23.18321 -22.67608 -21.30886 -19.39526 -19.24163 -18.66224 -17.77002 -17.56108 -17.05667 -16.94549 -16.60928 -16.45885 -15.75029 -15.44766 -15.35624 -15.19687 -15.03250 -14.90194 -14.59362 -13.98219 -13.33613 -13.03713 -12.96073 -12.66281 -12.48555 -12.17878 -12.03513 -11.85602 -11.50728 -11.46249 -11.33673 -10.99708 -10.13770 -10.06204 -9.05710 -7.96714 -5.27910 0.55140 1.09237 1.49368 1.50569 1.58737 1.60663 1.85878 1.98507 2.29889 2.59395 3.05342 3.38191 3.71928 3.78162 4.04960 4.18728 4.23664 4.28447 4.35625 4.41219 4.61173 4.68829 5.02418 5.05116 5.16417 5.19233 5.39218 5.50579 5.91449 6.24553 6.30782 6.55112 6.98812 7.24384 7.30566 8.03337 8.24917 9.27291 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.050826 B = 0.002760 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.767562 B =10142.628520 C =10254.452275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.978 3.022 4 H -0.260 1.260 5 H -0.296 1.296 6 H -0.294 1.294 7 C -0.245 4.245 8 H 0.085 0.915 9 N -0.750 5.750 10 C 0.148 3.852 11 C 0.129 3.871 12 N -0.705 5.705 13 C 0.483 3.517 14 O -0.586 6.586 15 C 0.140 3.860 16 N -0.605 5.605 17 C 0.069 3.931 18 C 0.532 3.468 19 O -0.503 6.503 20 N -0.675 5.675 21 C 0.701 3.299 22 O -0.583 6.583 23 H 0.252 0.748 24 H 0.373 0.627 25 H 0.044 0.956 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.422 0.578 30 H 0.180 0.820 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.174 0.826 34 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.229 -24.431 3.710 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.223 1.223 6 H -0.221 1.221 7 C -0.376 4.376 8 H 0.103 0.897 9 N -0.393 5.393 10 C 0.022 3.978 11 C 0.003 3.997 12 N -0.359 5.359 13 C 0.270 3.730 14 O -0.465 6.465 15 C 0.015 3.985 16 N -0.342 5.342 17 C -0.055 4.055 18 C 0.320 3.680 19 O -0.375 6.375 20 N -0.344 5.344 21 C 0.402 3.598 22 O -0.460 6.460 23 H 0.060 0.940 24 H 0.204 0.796 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.260 0.740 30 H 0.197 0.803 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.191 0.809 34 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 7.476 -24.451 3.523 25.810 hybrid contribution -0.529 1.021 -0.617 1.305 sum 6.948 -23.430 2.907 24.611 Atomic orbital electron populations 1.69845 1.06888 1.26180 1.59371 1.25677 0.96416 1.01520 1.03503 0.85002 0.78418 0.79348 0.76526 1.18416 1.22288 1.22082 1.19701 0.91784 0.84814 1.41326 0.89696 1.42477 1.05774 1.01290 1.89763 1.20876 0.93583 0.83907 0.99471 1.21098 0.94807 0.83009 1.00762 1.45659 1.11449 1.04359 1.74445 1.22059 0.88485 0.87188 0.75307 1.90732 1.16437 1.88205 1.51151 1.21493 0.88642 0.78186 1.10149 1.47132 1.46817 1.34492 1.05766 1.22808 0.99174 0.94050 0.89497 1.21139 0.80986 0.83808 0.82026 1.90858 1.40959 1.39188 1.66524 1.44300 1.43922 1.34943 1.11236 1.15993 0.78927 0.79658 0.85202 1.91007 1.65454 1.68906 1.20595 0.93967 0.79593 0.93841 0.94536 0.93796 0.92693 0.73993 0.80282 0.84452 0.85075 0.80851 0.71991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.69 13.06 21.65 0.28 -59.41 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.98 45.18 29.55 68.60 2.03 47.21 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 7 C -0.24 -13.26 9.99 84.03 0.84 -12.42 16 8 H 0.09 4.30 7.83 -2.91 -0.02 4.27 16 9 N -0.75 -37.23 5.60 -343.47 -1.92 -39.15 16 10 C 0.15 5.28 6.37 86.38 0.55 5.84 16 11 C 0.13 4.06 5.79 86.38 0.50 4.56 16 12 N -0.71 -14.68 5.56 -463.06 -2.57 -17.25 16 13 C 0.48 10.53 7.90 87.66 0.69 11.22 16 14 O -0.59 -19.36 16.43 -3.03 -0.05 -19.41 16 15 C 0.14 1.40 6.63 85.63 0.57 1.97 16 16 N -0.60 -8.47 2.51 -846.26 -2.12 -10.59 16 17 C 0.07 0.60 7.66 85.76 0.66 1.25 16 18 C 0.53 7.95 8.81 87.94 0.77 8.73 16 19 O -0.50 -10.56 18.02 -2.88 -0.05 -10.62 16 20 N -0.67 -10.79 5.70 -441.12 -2.52 -13.31 16 21 C 0.70 14.42 8.68 179.44 1.56 15.98 16 22 O -0.58 -16.91 17.71 -3.81 -0.07 -16.98 16 23 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 24 H 0.37 20.22 7.67 -92.71 -0.71 19.51 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.42 5.24 8.47 -92.71 -0.79 4.45 16 30 H 0.18 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.14 1.11 8.03 -2.39 -0.02 1.09 16 32 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.17 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.44 5.74 8.96 -92.71 -0.83 4.90 16 Total: -1.00 -85.73 309.06 -1.54 -87.27 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -1.16 Total: 19.12 kcal Atomic # 6 Polarization: 26.50 SS G_CDS: 6.61 Total: 33.11 kcal Atomic # 7 Polarization: -130.87 SS G_CDS: -8.85 Total: -139.72 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -0.17 Total: -47.00 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -85.73 -1.54 -87.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135457790.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.478 kcal (2) G-P(sol) polarization free energy of solvation -85.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds