Wall clock time and date at job start Mon Mar 30 2020 01:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00229 * 2 1 4 4 H 1.48490 * 109.47467 * 270.00450 * 3 2 1 5 5 H 1.48501 * 109.46928 * 30.00640 * 3 2 1 6 6 H 1.48497 * 109.47053 * 149.99898 * 3 2 1 7 7 C 1.37877 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00081 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99893 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47097 * 180.02562 * 9 7 2 11 11 C 1.34769 * 119.99870 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00363 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99739 * 179.97438 * 11 10 9 14 14 C 1.50703 * 109.46967 * 180.02562 * 13 11 10 15 15 C 1.36251 * 120.25807 * 264.97330 * 14 13 11 16 16 C 1.39338 * 121.01632 * 180.02562 * 15 14 13 17 17 C 1.36198 * 121.08808 * 0.02562 * 16 15 14 18 18 C 1.40340 * 119.51489 * 359.97438 * 17 16 15 19 19 C 1.40437 * 122.07993 * 180.02562 * 18 17 16 20 20 N 1.31239 * 119.87959 * 179.97438 * 19 18 17 21 21 C 1.32607 * 122.78084 * 0.02562 * 20 19 18 22 22 C 1.36172 * 121.88436 * 0.02562 * 21 20 19 23 23 C 1.40190 * 120.26225 * 85.00177 * 14 13 11 24 24 H 0.97001 * 119.99719 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47313 * 59.99904 * 9 7 2 26 26 H 1.09008 * 109.47067 * 299.99995 * 9 7 2 27 27 H 0.97002 * 119.99698 * 0.02562 * 10 9 7 28 28 H 1.09001 * 109.47272 * 59.99954 * 13 11 10 29 29 H 1.08999 * 109.47416 * 300.00086 * 13 11 10 30 30 H 1.07995 * 119.49161 * 0.05154 * 15 14 13 31 31 H 1.08005 * 119.45348 * 180.02562 * 16 15 14 32 32 H 1.08002 * 120.24583 * 180.02562 * 17 16 15 33 33 H 1.08005 * 120.06071 * 359.96557 * 19 18 17 34 34 H 1.08004 * 119.06045 * 180.02562 * 21 20 19 35 35 H 1.07994 * 120.66957 * 180.27803 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 1.7535 -4.8833 0.0000 12 8 0.5611 -5.1049 0.0000 13 6 2.7328 -6.0288 -0.0006 14 6 1.9792 -7.3339 -0.0005 15 6 1.7256 -7.9802 1.1719 16 6 1.0308 -9.1878 1.1903 17 6 0.5841 -9.7598 0.0378 18 6 0.8265 -9.1232 -1.1891 19 6 0.3900 -9.6644 -2.4093 20 7 0.6400 -9.0320 -3.5318 21 6 1.2989 -7.8821 -3.5766 22 6 1.7646 -7.2756 -2.4499 23 6 1.5340 -7.8928 -1.2066 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6245 -2.5570 0.8897 27 1 3.1565 -3.4355 -0.0002 28 1 3.3601 -5.9710 0.8889 29 1 3.3588 -5.9713 -0.8910 30 1 2.0682 -7.5497 2.1012 31 1 0.8434 -9.6784 2.1341 32 1 0.0465 -10.6961 0.0680 33 1 -0.1503 -10.5995 -2.4239 34 1 1.4710 -7.4131 -4.5341 35 1 2.2951 -6.3367 -2.5088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139423045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:40 Heat of formation + Delta-G solvation = 5.865003 kcal Electronic energy + Delta-G solvation = -19332.444857 eV Core-core repulsion = 16294.733939 eV Total energy + Delta-G solvation = -3037.710918 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.93349 -38.86333 -37.30156 -34.29883 -33.72161 -32.36447 -31.31672 -30.52521 -28.27805 -26.54029 -24.18298 -23.57729 -22.78907 -21.16136 -19.65855 -18.03360 -17.29886 -16.94350 -16.70694 -15.70534 -15.30498 -15.01970 -14.57271 -14.41908 -14.21049 -14.02913 -13.74269 -13.24046 -12.90119 -12.68319 -12.32446 -12.04634 -11.89519 -11.79845 -11.42787 -11.07016 -10.95060 -10.88663 -10.34290 -10.10433 -9.49240 -9.43195 -9.17733 -8.99865 -8.76916 -7.98385 -7.93228 -6.19536 -4.26955 0.36728 0.93608 1.92259 3.04547 3.22033 3.28281 3.29918 3.30517 3.95706 4.20903 4.35237 4.39648 4.49793 4.68372 4.77469 4.88050 5.02344 5.12583 5.16604 5.27276 5.36485 5.46197 5.52421 5.69781 5.79757 5.81975 6.01637 6.04535 6.35096 6.51305 6.63836 6.83465 7.26760 7.38219 7.47768 7.62537 7.93583 7.97342 8.57088 8.74083 9.04814 9.39893 10.90638 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.029562 B = 0.003896 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.926302 B = 7184.493042 C = 7649.115754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.713 5.713 11 C 0.498 3.502 12 O -0.546 6.546 13 C -0.110 4.110 14 C -0.044 4.044 15 C -0.093 4.093 16 C -0.112 4.112 17 C -0.096 4.096 18 C -0.111 4.111 19 C 0.140 3.860 20 N -0.490 5.490 21 C 0.070 3.930 22 C -0.143 4.143 23 C -0.008 4.008 24 H 0.266 0.734 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.391 0.609 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.161 0.839 34 H 0.152 0.848 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.367 -18.348 -0.291 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.361 5.361 11 C 0.282 3.718 12 O -0.424 6.424 13 C -0.150 4.150 14 C -0.044 4.044 15 C -0.112 4.112 16 C -0.131 4.131 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.032 4.032 20 N -0.198 5.198 21 C -0.072 4.072 22 C -0.163 4.163 23 C -0.014 4.014 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.223 0.777 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.178 0.822 34 H 0.169 0.831 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.101 -18.565 -1.169 19.289 hybrid contribution 1.098 1.579 0.864 2.108 sum 6.199 -16.987 -0.305 18.085 Atomic orbital electron populations 1.69979 1.06137 1.27349 1.48778 1.24957 0.94907 0.99480 0.94651 0.86410 0.79613 0.82617 0.78251 1.20432 1.20982 1.19728 1.21220 0.93258 0.90434 1.53370 0.91871 1.19108 0.88294 0.81932 0.97728 1.46470 1.11144 1.06033 1.72480 1.20253 0.89349 0.84109 0.78066 1.90700 1.16705 1.84781 1.50241 1.20780 0.98101 0.91052 1.05090 1.19122 0.98122 0.94764 0.92425 1.20835 0.97800 0.94976 0.97607 1.20858 0.98074 0.95684 0.98438 1.20904 0.99524 0.99793 0.91359 1.18982 1.00730 0.95861 0.95688 1.23126 0.95107 0.98362 0.86615 1.67380 1.12996 1.09099 1.30353 1.22123 0.94949 0.91588 0.98580 1.21946 1.01192 1.00640 0.92488 1.17954 0.96102 0.93624 0.93678 0.92411 0.95568 0.95580 0.77676 0.87966 0.88227 0.85605 0.85609 0.85138 0.82221 0.83088 0.84622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.61 9.28 -34.44 -0.32 -14.92 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 10 N -0.71 -14.52 5.55 -61.47 -0.34 -14.86 16 11 C 0.50 9.61 7.82 -10.99 -0.09 9.52 16 12 O -0.55 -13.10 16.03 5.55 0.09 -13.01 16 13 C -0.11 -1.49 5.28 -29.03 -0.15 -1.64 16 14 C -0.04 -0.63 4.38 -104.60 -0.46 -1.08 16 15 C -0.09 -1.17 9.58 -39.89 -0.38 -1.55 16 16 C -0.11 -1.23 9.94 -39.91 -0.40 -1.62 16 17 C -0.10 -1.04 9.81 -39.52 -0.39 -1.43 16 18 C -0.11 -1.47 5.74 -106.86 -0.61 -2.08 16 19 C 0.14 1.72 11.05 -16.98 -0.19 1.54 16 20 N -0.49 -6.91 10.30 -13.15 -0.14 -7.05 16 21 C 0.07 0.96 11.07 -17.96 -0.20 0.76 16 22 C -0.14 -2.04 9.35 -39.39 -0.37 -2.41 16 23 C -0.01 -0.12 5.75 -106.81 -0.61 -0.74 16 24 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 27 H 0.39 6.67 8.32 -40.82 -0.34 6.33 16 28 H 0.10 1.10 8.05 -51.93 -0.42 0.68 16 29 H 0.10 1.12 6.79 -51.93 -0.35 0.77 16 30 H 0.13 1.35 8.05 -52.49 -0.42 0.93 16 31 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 34 H 0.15 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.14 1.79 6.65 -52.49 -0.35 1.44 16 LS Contribution 308.24 15.07 4.65 4.65 Total: -1.00 -34.33 308.24 -8.27 -42.60 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -3.95 Total: 4.79 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -4.29 Total: -7.46 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.26 Total: -47.20 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.33 -8.27 -42.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139423045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.465 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds