Wall clock time and date at job start Mon Mar 30 2020 01:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00229 * 2 1 4 4 H 1.48490 * 109.47467 * 270.00450 * 3 2 1 5 5 H 1.48501 * 109.46928 * 30.00640 * 3 2 1 6 6 H 1.48497 * 109.47053 * 149.99898 * 3 2 1 7 7 C 1.37877 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00081 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99893 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47097 * 180.02562 * 9 7 2 11 11 C 1.34769 * 119.99870 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00363 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99739 * 179.97438 * 11 10 9 14 14 C 1.50703 * 109.46967 * 180.02562 * 13 11 10 15 15 C 1.36251 * 120.25807 * 264.97330 * 14 13 11 16 16 C 1.39338 * 121.01632 * 180.02562 * 15 14 13 17 17 C 1.36198 * 121.08808 * 0.02562 * 16 15 14 18 18 C 1.40340 * 119.51489 * 359.97438 * 17 16 15 19 19 C 1.40437 * 122.07993 * 180.02562 * 18 17 16 20 20 N 1.31239 * 119.87959 * 179.97438 * 19 18 17 21 21 C 1.32607 * 122.78084 * 0.02562 * 20 19 18 22 22 C 1.36172 * 121.88436 * 0.02562 * 21 20 19 23 23 C 1.40190 * 120.26225 * 85.00177 * 14 13 11 24 24 H 0.97001 * 119.99719 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47313 * 59.99904 * 9 7 2 26 26 H 1.09008 * 109.47067 * 299.99995 * 9 7 2 27 27 H 0.97002 * 119.99698 * 0.02562 * 10 9 7 28 28 H 1.09001 * 109.47272 * 59.99954 * 13 11 10 29 29 H 1.08999 * 109.47416 * 300.00086 * 13 11 10 30 30 H 1.07995 * 119.49161 * 0.05154 * 15 14 13 31 31 H 1.08005 * 119.45348 * 180.02562 * 16 15 14 32 32 H 1.08002 * 120.24583 * 180.02562 * 17 16 15 33 33 H 1.08005 * 120.06071 * 359.96557 * 19 18 17 34 34 H 1.08004 * 119.06045 * 180.02562 * 21 20 19 35 35 H 1.07994 * 120.66957 * 180.27803 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 1.7535 -4.8833 0.0000 12 8 0.5611 -5.1049 0.0000 13 6 2.7328 -6.0288 -0.0006 14 6 1.9792 -7.3339 -0.0005 15 6 1.7256 -7.9802 1.1719 16 6 1.0308 -9.1878 1.1903 17 6 0.5841 -9.7598 0.0378 18 6 0.8265 -9.1232 -1.1891 19 6 0.3900 -9.6644 -2.4093 20 7 0.6400 -9.0320 -3.5318 21 6 1.2989 -7.8821 -3.5766 22 6 1.7646 -7.2756 -2.4499 23 6 1.5340 -7.8928 -1.2066 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6245 -2.5570 0.8897 27 1 3.1565 -3.4355 -0.0002 28 1 3.3601 -5.9710 0.8889 29 1 3.3588 -5.9713 -0.8910 30 1 2.0682 -7.5497 2.1012 31 1 0.8434 -9.6784 2.1341 32 1 0.0465 -10.6961 0.0680 33 1 -0.1503 -10.5995 -2.4239 34 1 1.4710 -7.4131 -4.5341 35 1 2.2951 -6.3367 -2.5088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139423045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:40 Heat of formation + Delta-G solvation = -17.659080 kcal Electronic energy + Delta-G solvation = -19333.464938 eV Core-core repulsion = 16294.733939 eV Total energy + Delta-G solvation = -3038.730999 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.92330 -40.40958 -38.30687 -36.16560 -34.80752 -34.34085 -32.31326 -31.55771 -29.82822 -28.08996 -25.18083 -24.69733 -24.51137 -22.38044 -21.21260 -18.99174 -18.95218 -18.02980 -17.71156 -17.50027 -17.01084 -16.33076 -16.03441 -15.72933 -15.29362 -15.18449 -14.75352 -14.55442 -14.31858 -14.05090 -13.99260 -13.54387 -13.01409 -12.96428 -12.89483 -12.72186 -12.53339 -12.23753 -11.91015 -11.49826 -11.14154 -10.81754 -10.77558 -10.48597 -9.98408 -9.84522 -8.95057 -8.30482 -6.47465 -0.57890 -0.03614 0.94864 1.42642 1.44902 1.56175 1.75461 2.08452 2.33339 2.64123 3.04632 3.15737 3.44213 3.53649 3.75476 3.87191 3.95818 4.03962 4.16564 4.27403 4.36278 4.44087 4.52210 4.75465 4.85816 4.87162 5.06939 5.13500 5.14736 5.21916 5.46269 5.47413 5.55532 5.67449 5.69688 5.83384 5.95250 6.64063 6.89862 6.99036 7.22383 7.49180 8.81746 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.029562 B = 0.003896 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.926302 B = 7184.493042 C = 7649.115754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.707 5.707 11 C 0.498 3.502 12 O -0.597 6.597 13 C -0.093 4.093 14 C -0.078 4.078 15 C -0.094 4.094 16 C -0.121 4.121 17 C -0.087 4.087 18 C -0.133 4.133 19 C 0.144 3.856 20 N -0.515 5.515 21 C 0.060 3.940 22 C -0.166 4.166 23 C -0.032 4.032 24 H 0.268 0.732 25 H -0.016 1.016 26 H -0.014 1.014 27 H 0.410 0.590 28 H 0.137 0.863 29 H 0.123 0.877 30 H 0.143 0.857 31 H 0.159 0.841 32 H 0.169 0.831 33 H 0.197 0.803 34 H 0.166 0.834 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.159 -19.444 0.581 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.358 5.358 11 C 0.285 3.715 12 O -0.479 6.479 13 C -0.132 4.132 14 C -0.078 4.078 15 C -0.113 4.113 16 C -0.138 4.138 17 C -0.107 4.107 18 C -0.135 4.135 19 C -0.027 4.027 20 N -0.223 5.223 21 C -0.082 4.082 22 C -0.185 4.185 23 C -0.037 4.037 24 H 0.077 0.923 25 H 0.002 0.998 26 H 0.004 0.996 27 H 0.246 0.754 28 H 0.155 0.845 29 H 0.141 0.859 30 H 0.160 0.840 31 H 0.177 0.823 32 H 0.186 0.814 33 H 0.214 0.786 34 H 0.183 0.817 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.954 -19.689 -0.298 20.883 hybrid contribution 0.459 1.781 0.630 1.944 sum 7.413 -17.908 0.332 19.384 Atomic orbital electron populations 1.70148 1.08363 1.28560 1.50036 1.26079 0.95738 1.03971 0.93825 0.85154 0.78549 0.76918 0.78593 1.19658 1.21033 1.17719 1.21633 0.94373 0.90519 1.52829 0.89625 1.18512 0.88715 0.84469 0.93870 1.46195 1.11219 1.05421 1.72916 1.21294 0.89717 0.84724 0.75742 1.90670 1.19536 1.85509 1.52138 1.20722 0.96721 0.87961 1.07836 1.19264 1.00083 0.95465 0.93020 1.21242 0.96937 0.95470 0.97663 1.21281 0.97371 0.95198 0.99997 1.21371 0.98387 1.00662 0.90248 1.19345 1.01116 0.95867 0.97165 1.23762 0.93996 0.99058 0.85919 1.67442 1.14028 1.09554 1.31309 1.22411 0.94780 0.91789 0.99189 1.22043 1.02412 1.01097 0.92975 1.18283 0.96735 0.94653 0.94019 0.92281 0.99836 0.99624 0.75425 0.84498 0.85913 0.83967 0.82320 0.81393 0.78612 0.81678 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.98 42.07 29.54 68.60 2.03 44.10 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.56 -30.04 9.28 25.60 0.24 -29.80 16 8 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.27 14.67 5.43 85.63 0.46 15.14 16 10 N -0.71 -29.19 5.55 -466.77 -2.59 -31.78 16 11 C 0.50 19.46 7.82 87.66 0.69 20.15 16 12 O -0.60 -29.83 16.03 -3.04 -0.05 -29.88 16 13 C -0.09 -2.40 5.28 29.10 0.15 -2.24 16 14 C -0.08 -2.15 4.38 -19.85 -0.09 -2.24 16 15 C -0.09 -2.18 9.58 22.07 0.21 -1.97 16 16 C -0.12 -2.28 9.94 22.06 0.22 -2.06 16 17 C -0.09 -1.65 9.81 22.31 0.22 -1.43 16 18 C -0.13 -3.35 5.74 -21.31 -0.12 -3.48 16 19 C 0.14 3.35 11.05 85.32 0.94 4.30 16 20 N -0.51 -14.33 10.30 -195.52 -2.01 -16.34 16 21 C 0.06 1.68 11.07 84.09 0.93 2.61 16 22 C -0.17 -4.84 9.35 22.39 0.21 -4.63 16 23 C -0.03 -0.94 5.75 -21.28 -0.12 -1.06 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 26 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 27 H 0.41 13.59 8.32 -92.71 -0.77 12.82 16 28 H 0.14 2.54 8.05 -2.39 -0.02 2.53 16 29 H 0.12 2.58 6.79 -2.39 -0.02 2.56 16 30 H 0.14 2.69 8.05 -2.91 -0.02 2.67 16 31 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 32 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.20 2.83 8.06 -2.91 -0.02 2.81 16 34 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 35 H 0.14 3.73 6.65 -2.91 -0.02 3.71 16 Total: -1.00 -78.69 308.24 2.41 -76.28 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.35 Total: 19.93 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 4.40 Total: -6.07 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -4.32 Total: -104.36 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.05 Total: -29.88 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -78.69 2.41 -76.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139423045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.619 kcal (2) G-P(sol) polarization free energy of solvation -78.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds