Wall clock time and date at job start Mon Mar 30 2020 00:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.47147 * 2 1 4 4 C 1.36924 * 120.00145 * 82.73747 * 3 2 1 5 5 H 1.08001 * 120.00309 * 171.51671 * 4 3 2 6 6 C 1.39004 * 120.00048 * 351.52375 * 4 3 2 7 7 N 1.31400 * 120.00000 * 1.63333 * 6 4 3 8 8 Si 1.86797 * 120.00200 * 181.63581 * 6 4 3 9 9 H 1.48495 * 109.47261 * 60.00020 * 8 6 4 10 10 H 1.48504 * 109.47098 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47241 * 299.99870 * 8 6 4 12 12 C 1.34777 * 120.00229 * 262.74316 * 3 2 1 13 13 O 1.21646 * 120.00347 * 184.42424 * 12 3 2 14 14 C 1.47208 * 119.99512 * 4.69624 * 12 3 2 15 15 C 1.39904 * 120.17993 * 299.45314 * 14 12 3 16 16 C 1.37783 * 119.92090 * 179.97438 * 15 14 12 17 17 F 1.35102 * 119.85847 * 179.97438 * 16 15 14 18 18 C 1.39083 * 120.28340 * 359.97438 * 16 15 14 19 19 F 1.35102 * 119.82184 * 180.02562 * 18 16 15 20 20 C 1.38239 * 120.36262 * 0.02562 * 18 16 15 21 21 C 1.38801 * 120.07553 * 359.74001 * 20 18 16 22 22 N 1.38997 * 120.14549 * 180.25468 * 21 20 18 23 23 H 1.08994 * 109.47373 * 300.00359 * 1 2 3 24 24 H 1.09000 * 109.46553 * 60.00644 * 1 2 3 25 25 H 1.09002 * 109.46705 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47373 * 239.99641 * 2 1 3 27 27 H 1.09007 * 109.46837 * 119.99647 * 2 1 3 28 28 H 0.96997 * 119.99955 * 180.02562 * 7 6 4 29 29 H 1.08003 * 120.04076 * 359.95972 * 15 14 12 30 30 H 1.08006 * 119.96316 * 180.02562 * 20 18 16 31 31 H 0.97005 * 120.00146 * 185.21741 * 22 21 20 32 32 H 0.97000 * 119.99995 * 5.22286 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1053 2.0767 1.1763 5 1 2.5908 3.0411 1.1988 6 6 1.5688 1.5413 2.3415 7 7 1.0067 0.3538 2.3208 8 14 1.6468 2.5100 3.9367 9 1 0.9272 3.7981 3.7693 10 1 1.0091 1.7251 5.0242 11 1 3.0655 2.7772 4.2848 12 6 2.3821 1.9674 -1.1578 13 8 2.8628 3.0848 -1.1491 14 6 2.1919 1.2579 -2.4335 15 6 2.8332 0.0354 -2.6608 16 6 2.6510 -0.6244 -3.8565 17 9 3.2714 -1.8045 -4.0749 18 6 1.8312 -0.0808 -4.8398 19 9 1.6587 -0.7360 -6.0086 20 6 1.1918 1.1264 -4.6276 21 6 1.3609 1.8014 -3.4267 22 7 0.7145 3.0127 -3.2098 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 0.6320 -0.0197 3.1338 29 1 3.4706 -0.3904 -1.8999 30 1 0.5562 1.5424 -5.3954 31 1 0.8926 3.5198 -2.4022 32 1 0.0852 3.3509 -3.8659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142137964.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:56 Heat of formation + Delta-G solvation = -76.657829 kcal Electronic energy + Delta-G solvation = -21051.506877 eV Core-core repulsion = 17455.987971 eV Total energy + Delta-G solvation = -3595.518907 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.13490 -48.17106 -39.71345 -37.59812 -35.28279 -34.02292 -31.93792 -30.47304 -29.44007 -28.18320 -25.25776 -23.55358 -22.27808 -21.97081 -19.65756 -17.81231 -17.63253 -17.16860 -16.77610 -16.04576 -15.81207 -15.42250 -14.91112 -14.62655 -14.54184 -14.18122 -13.84833 -13.64872 -13.28993 -12.82370 -12.61501 -12.43680 -12.35685 -11.65410 -11.35088 -11.31195 -11.07644 -10.79645 -10.42733 -10.26725 -10.18158 -9.86828 -8.96538 -8.75611 -8.48902 -7.84106 -7.30871 -6.31972 -3.95337 1.13666 1.48598 3.07969 3.16882 3.20096 3.48949 3.85534 3.87663 4.03344 4.27977 4.63430 4.72230 4.87831 5.10059 5.35222 5.39914 5.73680 6.00375 6.06851 6.09930 6.25508 6.40574 6.65034 6.73408 6.85841 6.94789 7.29364 7.50434 7.57581 7.71818 7.91654 7.99352 8.39320 9.02691 9.29458 9.82581 10.52277 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028773 B = 0.005971 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.887872 B = 4688.446423 C = 5075.807918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.108 3.892 3 N -0.422 5.422 4 C -0.295 4.295 5 H 0.106 0.894 6 C 0.024 3.976 7 N -0.870 5.870 8 Si 0.935 3.065 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.473 3.527 13 O -0.594 6.594 14 C -0.145 4.145 15 C -0.055 4.055 16 C -0.002 4.002 17 F -0.139 7.139 18 C 0.116 3.884 19 F -0.134 7.134 20 C -0.221 4.221 21 C 0.272 3.728 22 N -0.854 5.854 23 H 0.090 0.910 24 H 0.014 0.986 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.119 0.881 28 H 0.268 0.732 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.415 0.585 32 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 -1.397 -8.166 8.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.014 4.014 3 N -0.137 5.137 4 C -0.423 4.423 5 H 0.124 0.876 6 C -0.178 4.178 7 N -0.511 5.511 8 Si 0.762 3.238 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.198 1.198 12 C 0.262 3.738 13 O -0.481 6.481 14 C -0.154 4.154 15 C -0.076 4.076 16 C -0.024 4.024 17 F -0.118 7.118 18 C 0.095 3.905 19 F -0.112 7.112 20 C -0.245 4.245 21 C 0.162 3.838 22 N -0.391 5.391 23 H 0.109 0.891 24 H 0.033 0.967 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.136 0.864 28 H 0.079 0.921 29 H 0.165 0.835 30 H 0.159 0.841 31 H 0.247 0.753 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.286 -1.064 -7.974 8.364 hybrid contribution -0.246 0.151 0.489 0.567 sum -2.532 -0.913 -7.486 7.955 Atomic orbital electron populations 1.22156 0.96622 0.99642 1.01074 1.22029 0.95056 0.82970 1.01370 1.43838 1.52749 1.11986 1.05174 1.19825 1.34585 1.03521 0.84353 0.87618 1.25355 0.96047 0.96530 0.99902 1.70148 1.37216 1.15398 1.28341 0.85843 0.78778 0.79142 0.80059 1.19891 1.20816 1.19805 1.17407 0.86914 0.86804 0.82692 1.90636 1.50458 1.20475 1.86575 1.19580 1.02623 0.96365 0.96819 1.20955 0.98465 0.93312 0.94825 1.17138 1.02841 0.86331 0.96134 1.91465 1.81235 1.43950 1.95142 1.17316 0.99125 0.92254 0.81817 1.91481 1.94087 1.80416 1.45262 1.20167 1.08886 0.96746 0.98679 1.17273 0.89483 0.86179 0.90904 1.42459 1.48044 1.21258 1.27360 0.89121 0.96714 0.94614 0.94472 0.86362 0.92112 0.83525 0.84103 0.75308 0.77494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.46 37.16 0.35 -2.54 16 2 C 0.11 2.38 5.27 -4.04 -0.02 2.36 16 3 N -0.42 -10.20 2.64 -116.10 -0.31 -10.51 16 4 C -0.29 -7.64 9.51 -14.99 -0.14 -7.78 16 5 H 0.11 2.87 7.18 -52.49 -0.38 2.49 16 6 C 0.02 0.57 5.25 -17.45 -0.09 0.48 16 7 N -0.87 -20.84 7.18 55.50 0.40 -20.44 16 8 Si 0.94 19.49 29.55 -169.99 -5.02 14.46 16 9 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 10 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 12 C 0.47 11.05 6.23 -12.62 -0.08 10.97 16 13 O -0.59 -15.49 15.80 5.24 0.08 -15.41 16 14 C -0.15 -2.83 4.94 -104.80 -0.52 -3.35 16 15 C -0.06 -0.99 7.52 -39.12 -0.29 -1.28 16 16 C 0.00 -0.04 7.29 -39.43 -0.29 -0.33 16 17 F -0.14 -2.35 17.17 2.25 0.04 -2.32 16 18 C 0.12 1.83 7.30 -39.27 -0.29 1.55 16 19 F -0.13 -2.06 17.17 2.25 0.04 -2.02 16 20 C -0.22 -3.22 9.85 -39.37 -0.39 -3.61 16 21 C 0.27 4.56 6.76 -83.57 -0.57 3.99 16 22 N -0.85 -12.66 8.98 32.56 0.29 -12.36 16 23 H 0.09 2.12 5.86 -51.93 -0.30 1.82 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.74 4.27 -51.93 -0.22 0.52 16 27 H 0.12 2.80 5.89 -51.93 -0.31 2.50 16 28 H 0.27 6.14 8.31 -40.82 -0.34 5.80 16 29 H 0.15 2.53 7.44 -52.48 -0.39 2.14 16 30 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 31 H 0.41 7.09 7.06 -40.82 -0.29 6.80 16 32 H 0.40 4.31 8.84 -40.82 -0.36 3.95 16 LS Contribution 278.38 15.07 4.20 4.20 Total: -1.00 -27.38 278.38 -5.26 -32.64 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -2.65 Total: 11.30 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.32 Total: 0.47 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.38 Total: -43.31 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.08 Total: -15.41 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.08 Total: -4.34 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.38 -5.26 -32.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142137964.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.022 kcal (2) G-P(sol) polarization free energy of solvation -27.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds