Wall clock time and date at job start Mon Mar 30 2020 00:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.47147 * 2 1 4 4 C 1.36924 * 120.00145 * 82.73747 * 3 2 1 5 5 H 1.08001 * 120.00309 * 171.51671 * 4 3 2 6 6 C 1.39004 * 120.00048 * 351.52375 * 4 3 2 7 7 N 1.31400 * 120.00000 * 1.63333 * 6 4 3 8 8 Si 1.86797 * 120.00200 * 181.63581 * 6 4 3 9 9 H 1.48495 * 109.47261 * 60.00020 * 8 6 4 10 10 H 1.48504 * 109.47098 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47241 * 299.99870 * 8 6 4 12 12 C 1.34777 * 120.00229 * 262.74316 * 3 2 1 13 13 O 1.21646 * 120.00347 * 184.42424 * 12 3 2 14 14 C 1.47208 * 119.99512 * 4.69624 * 12 3 2 15 15 C 1.39904 * 120.17993 * 299.45314 * 14 12 3 16 16 C 1.37783 * 119.92090 * 179.97438 * 15 14 12 17 17 F 1.35102 * 119.85847 * 179.97438 * 16 15 14 18 18 C 1.39083 * 120.28340 * 359.97438 * 16 15 14 19 19 F 1.35102 * 119.82184 * 180.02562 * 18 16 15 20 20 C 1.38239 * 120.36262 * 0.02562 * 18 16 15 21 21 C 1.38801 * 120.07553 * 359.74001 * 20 18 16 22 22 N 1.38997 * 120.14549 * 180.25468 * 21 20 18 23 23 H 1.08994 * 109.47373 * 300.00359 * 1 2 3 24 24 H 1.09000 * 109.46553 * 60.00644 * 1 2 3 25 25 H 1.09002 * 109.46705 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47373 * 239.99641 * 2 1 3 27 27 H 1.09007 * 109.46837 * 119.99647 * 2 1 3 28 28 H 0.96997 * 119.99955 * 180.02562 * 7 6 4 29 29 H 1.08003 * 120.04076 * 359.95972 * 15 14 12 30 30 H 1.08006 * 119.96316 * 180.02562 * 20 18 16 31 31 H 0.97005 * 120.00146 * 185.21741 * 22 21 20 32 32 H 0.97000 * 119.99995 * 5.22286 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1053 2.0767 1.1763 5 1 2.5908 3.0411 1.1988 6 6 1.5688 1.5413 2.3415 7 7 1.0067 0.3538 2.3208 8 14 1.6468 2.5100 3.9367 9 1 0.9272 3.7981 3.7693 10 1 1.0091 1.7251 5.0242 11 1 3.0655 2.7772 4.2848 12 6 2.3821 1.9674 -1.1578 13 8 2.8628 3.0848 -1.1491 14 6 2.1919 1.2579 -2.4335 15 6 2.8332 0.0354 -2.6608 16 6 2.6510 -0.6244 -3.8565 17 9 3.2714 -1.8045 -4.0749 18 6 1.8312 -0.0808 -4.8398 19 9 1.6587 -0.7360 -6.0086 20 6 1.1918 1.1264 -4.6276 21 6 1.3609 1.8014 -3.4267 22 7 0.7145 3.0127 -3.2098 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 0.6320 -0.0197 3.1338 29 1 3.4706 -0.3904 -1.8999 30 1 0.5562 1.5424 -5.3954 31 1 0.8926 3.5198 -2.4022 32 1 0.0852 3.3509 -3.8659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142137964.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:56 Heat of formation + Delta-G solvation = -92.940753 kcal Electronic energy + Delta-G solvation = -21052.212958 eV Core-core repulsion = 17455.987971 eV Total energy + Delta-G solvation = -3596.224987 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.41249 -49.46774 -41.26866 -39.17503 -37.11345 -35.33728 -33.74287 -31.92574 -31.18989 -29.51898 -27.04131 -25.02639 -23.68444 -23.63984 -21.26508 -19.19785 -18.94967 -18.82120 -18.40472 -17.54175 -17.20901 -16.75740 -16.46283 -16.00530 -15.92593 -15.86407 -15.33156 -15.13865 -14.85318 -14.57138 -14.11279 -13.85015 -13.75523 -13.39523 -13.10078 -12.82379 -12.69257 -12.48311 -12.13534 -11.99046 -11.87454 -11.30870 -10.77262 -10.49401 -9.98159 -9.65570 -8.60868 -8.16740 -5.88943 -0.20305 0.17234 1.39870 1.45445 1.54301 1.89323 2.24516 2.43096 2.61629 2.96317 3.05185 3.15246 3.39066 3.61067 3.83953 4.11865 4.40156 4.50913 4.68809 4.74298 4.79853 4.91643 5.00287 5.08390 5.18781 5.40376 5.63146 5.65433 5.94058 6.07820 6.28171 6.53359 6.83385 7.14940 7.46672 7.99617 8.65164 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028773 B = 0.005971 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.887872 B = 4688.446423 C = 5075.807918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.112 3.888 3 N -0.433 5.433 4 C -0.336 4.336 5 H 0.081 0.919 6 C -0.002 4.002 7 N -0.873 5.873 8 Si 0.992 3.008 9 H -0.275 1.275 10 H -0.270 1.270 11 H -0.275 1.275 12 C 0.473 3.527 13 O -0.632 6.632 14 C -0.176 4.176 15 C -0.055 4.055 16 C -0.009 4.009 17 F -0.140 7.140 18 C 0.126 3.874 19 F -0.127 7.127 20 C -0.199 4.199 21 C 0.273 3.727 22 N -0.845 5.845 23 H 0.066 0.934 24 H 0.017 0.983 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.272 0.728 29 H 0.144 0.856 30 H 0.181 0.819 31 H 0.405 0.595 32 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.565 -1.896 -9.383 10.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.010 4.010 3 N -0.148 5.148 4 C -0.463 4.463 5 H 0.099 0.901 6 C -0.203 4.203 7 N -0.512 5.512 8 Si 0.816 3.184 9 H -0.201 1.201 10 H -0.195 1.195 11 H -0.201 1.201 12 C 0.263 3.737 13 O -0.521 6.521 14 C -0.184 4.184 15 C -0.075 4.075 16 C -0.031 4.031 17 F -0.119 7.119 18 C 0.105 3.895 19 F -0.106 7.106 20 C -0.223 4.223 21 C 0.161 3.839 22 N -0.382 5.382 23 H 0.085 0.915 24 H 0.036 0.964 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.162 0.838 30 H 0.198 0.802 31 H 0.235 0.765 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -3.449 -1.589 -9.223 9.974 hybrid contribution 0.101 0.285 0.772 0.829 sum -3.348 -1.304 -8.451 9.183 Atomic orbital electron populations 1.21987 0.95846 1.00500 0.99974 1.21985 0.95607 0.82004 1.01402 1.43982 1.53050 1.12644 1.05138 1.19738 1.36934 1.03568 0.86092 0.90112 1.25969 0.95192 0.97333 1.01831 1.70246 1.36307 1.15604 1.29061 0.85002 0.78456 0.77954 0.76954 1.20084 1.19487 1.20072 1.17946 0.85505 0.86501 0.83736 1.90588 1.51817 1.22290 1.87439 1.19303 1.05686 0.97502 0.95957 1.20839 0.98348 0.92917 0.95393 1.17115 1.03417 0.86393 0.96176 1.91462 1.81370 1.43996 1.95106 1.17373 0.98288 0.92318 0.81526 1.91508 1.93925 1.80340 1.44795 1.20430 1.07971 0.95569 0.98298 1.17387 0.88980 0.86636 0.90929 1.42453 1.47938 1.20461 1.27373 0.91493 0.96351 0.92665 0.92468 0.88244 0.91705 0.83836 0.80150 0.76545 0.75129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 9.46 71.98 0.68 -4.51 16 2 C 0.11 4.95 5.27 86.38 0.46 5.40 16 3 N -0.43 -21.44 2.64 -639.48 -1.69 -23.13 16 4 C -0.34 -17.96 9.51 84.08 0.80 -17.16 16 5 H 0.08 4.62 7.18 -2.91 -0.02 4.60 16 6 C 0.00 -0.08 5.25 84.94 0.45 0.37 16 7 N -0.87 -41.81 7.18 21.67 0.16 -41.65 16 8 Si 0.99 40.16 29.55 68.60 2.03 42.19 16 9 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 11 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 12 C 0.47 22.57 6.23 86.60 0.54 23.11 16 13 O -0.63 -34.05 15.80 -4.18 -0.07 -34.11 16 14 C -0.18 -6.75 4.94 -19.98 -0.10 -6.84 16 15 C -0.05 -1.91 7.52 22.57 0.17 -1.74 16 16 C -0.01 -0.28 7.29 22.37 0.16 -0.12 16 17 F -0.14 -4.52 17.17 44.97 0.77 -3.74 16 18 C 0.13 3.58 7.30 22.47 0.16 3.74 16 19 F -0.13 -3.46 17.17 44.97 0.77 -2.69 16 20 C -0.20 -5.06 9.85 22.40 0.22 -4.84 16 21 C 0.27 8.56 6.76 38.68 0.26 8.82 16 22 N -0.84 -23.56 8.98 -50.90 -0.46 -24.01 16 23 H 0.07 3.12 5.86 -2.39 -0.01 3.10 16 24 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 26 H 0.06 2.26 4.27 -2.39 -0.01 2.25 16 27 H 0.10 4.76 5.89 -2.38 -0.01 4.75 16 28 H 0.27 12.31 8.31 -92.71 -0.77 11.54 16 29 H 0.14 4.98 7.44 -2.91 -0.02 4.96 16 30 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.40 13.67 7.06 -92.70 -0.65 13.01 16 32 H 0.42 7.88 8.84 -92.71 -0.82 7.06 16 Total: -1.00 -59.46 278.38 5.05 -54.40 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -0.27 Total: 26.52 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 3.80 Total: 6.22 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -1.99 Total: -88.79 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.07 Total: -34.11 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 1.54 Total: -6.43 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -59.46 5.05 -54.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142137964.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.539 kcal (2) G-P(sol) polarization free energy of solvation -59.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds