Wall clock time and date at job start Mon Mar 30 2020 01:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39661 * 120.25675 * 19.34879 * 3 2 1 5 5 C 1.37635 * 119.55996 * 180.22211 * 4 3 2 6 6 C 1.39010 * 120.73129 * 359.92077 * 5 4 3 7 7 C 1.37844 * 120.06930 * 359.71417 * 6 5 4 8 8 C 1.38707 * 119.66792 * 0.52289 * 7 6 5 9 9 C 1.50635 * 122.85276 * 180.76774 * 7 6 5 10 10 C 1.53270 * 110.83382 * 340.05468 * 9 7 6 11 11 N 1.47238 * 107.60747 * 47.68511 * 10 9 7 12 12 C 1.34774 * 121.33801 * 115.63608 * 11 10 9 13 13 O 1.21277 * 120.00513 * 359.71303 * 12 11 10 14 14 C 1.50700 * 119.99464 * 179.71075 * 12 11 10 15 15 C 1.50702 * 109.46869 * 179.97438 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.46661 * 117.31733 * 295.35975 * 11 10 9 24 24 H 1.08004 * 120.21385 * 0.22192 * 4 3 2 25 25 H 1.08001 * 119.63607 * 179.97438 * 5 4 3 26 26 H 1.07993 * 119.76246 * 179.61574 * 8 7 6 27 27 H 1.08994 * 109.19765 * 100.52249 * 9 7 6 28 28 H 1.09001 * 109.19780 * 219.80864 * 9 7 6 29 29 H 1.08995 * 109.89953 * 288.17594 * 10 9 7 30 30 H 1.09000 * 109.91358 * 167.19542 * 10 9 7 31 31 H 1.09004 * 109.47210 * 60.00192 * 14 12 11 32 32 H 1.08994 * 109.47551 * 299.99844 * 14 12 11 33 33 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 34 34 H 1.08999 * 109.43216 * 164.67142 * 23 11 10 35 35 H 1.09004 * 109.43380 * 284.57276 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2722 -1.1373 -0.3997 5 6 4.6485 -1.1224 -0.3898 6 6 5.3437 0.0124 0.0118 7 6 4.6562 1.1421 0.4006 8 6 3.2692 1.1362 0.3991 9 6 5.3454 2.4106 0.8308 10 6 6.7942 2.1302 1.2452 11 7 7.4033 1.2941 0.1974 12 6 8.4306 1.7445 -0.5497 13 8 8.8684 2.8609 -0.3688 14 6 9.0355 0.8606 -1.6098 15 6 10.1581 1.5954 -2.2960 16 1 10.4088 2.6017 -1.9943 17 6 10.8693 0.9808 -3.3048 18 7 10.5643 -0.2447 -3.6719 19 14 12.2658 1.8889 -4.1501 20 1 13.5370 1.6226 -3.4301 21 1 12.3841 1.4186 -5.5537 22 1 11.9866 3.3474 -4.1385 23 6 6.8511 -0.0507 0.0036 24 1 2.7403 -2.0230 -0.7145 25 1 5.1943 -2.0018 -0.6982 26 1 2.7290 2.0184 0.7093 27 1 5.3381 3.1206 0.0039 28 1 4.8090 2.8408 1.6765 29 1 6.8117 1.5997 2.1972 30 1 7.3429 3.0678 1.3344 31 1 8.2725 0.5977 -2.3425 32 1 9.4238 -0.0471 -1.1480 33 1 11.0645 -0.6770 -4.3818 34 1 7.1923 -0.4486 -0.9521 35 1 7.1905 -0.7016 0.8094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143193929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:00 Heat of formation + Delta-G solvation = 12.566911 kcal Electronic energy + Delta-G solvation = -19408.233723 eV Core-core repulsion = 16370.813421 eV Total energy + Delta-G solvation = -3037.420302 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.43503 -38.72137 -36.87498 -35.48413 -33.31409 -32.85071 -31.61667 -29.96461 -28.57581 -26.23108 -24.30533 -23.13546 -22.66666 -21.47354 -18.86837 -17.93965 -16.73020 -16.28994 -16.11338 -15.39106 -15.00442 -14.87728 -14.49307 -14.34950 -14.22869 -13.72181 -13.37303 -13.14455 -13.07089 -12.91575 -12.48919 -12.27002 -12.14514 -11.96053 -11.56549 -11.37064 -11.18505 -10.87675 -10.76293 -10.66192 -9.98992 -9.29297 -9.08600 -8.80661 -8.71203 -8.47515 -8.25830 -6.10209 -4.09596 0.56560 1.10721 2.45173 2.72123 3.32614 3.38026 3.41401 3.49446 3.56039 3.63347 3.67530 4.44823 4.49983 4.59082 4.63475 4.89670 5.05988 5.23110 5.26751 5.28656 5.37340 5.53949 5.56914 5.67005 5.77827 5.79969 6.00359 6.02517 6.07588 6.19786 6.39051 6.61758 6.86372 7.10698 7.24721 7.26528 7.86920 7.92959 8.29734 9.00600 9.09570 9.55747 11.02098 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.028509 B = 0.004079 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.899233 B = 6862.673750 C = 7411.138568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.261 3.739 3 C -0.038 4.038 4 C -0.073 4.073 5 C -0.112 4.112 6 C -0.055 4.055 7 C -0.068 4.068 8 C -0.070 4.070 9 C -0.098 4.098 10 C 0.109 3.891 11 N -0.632 5.632 12 C 0.522 3.478 13 O -0.540 6.540 14 C 0.007 3.993 15 C -0.510 4.510 16 H 0.075 0.925 17 C 0.056 3.944 18 N -0.900 5.900 19 Si 0.901 3.099 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.272 1.272 23 C 0.145 3.855 24 H 0.133 0.867 25 H 0.139 0.861 26 H 0.130 0.870 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.262 0.738 34 H 0.112 0.888 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.384 -2.617 9.295 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.054 4.054 3 C -0.041 4.041 4 C -0.094 4.094 5 C -0.131 4.131 6 C -0.056 4.056 7 C -0.068 4.068 8 C -0.090 4.090 9 C -0.135 4.135 10 C -0.014 4.014 11 N -0.368 5.368 12 C 0.314 3.686 13 O -0.415 6.415 14 C -0.032 4.032 15 C -0.548 4.548 16 H 0.093 0.907 17 C -0.145 4.145 18 N -0.540 5.540 19 Si 0.729 3.271 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.197 1.197 23 C 0.021 3.979 24 H 0.151 0.849 25 H 0.157 0.843 26 H 0.148 0.852 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.130 0.870 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.812 -2.116 9.240 16.752 hybrid contribution 0.949 0.213 -0.535 1.110 sum -12.863 -1.903 8.705 15.647 Atomic orbital electron populations 1.81244 1.12137 1.07709 1.09148 1.25758 0.92686 0.93556 0.93429 1.15870 0.84097 0.96669 1.07496 1.21042 0.94128 0.96715 0.97487 1.21045 0.93542 0.98449 1.00042 1.20309 0.96543 0.93095 0.95674 1.19470 0.92461 0.95577 0.99318 1.21175 0.93549 0.96699 0.97609 1.20958 0.96159 0.94375 1.02050 1.21538 0.91909 0.97387 0.90537 1.48374 1.35658 1.15268 1.37493 1.22044 0.76985 0.88309 0.81237 1.90536 1.60910 1.21408 1.68664 1.19270 0.96993 0.95227 0.91742 1.21168 1.14673 1.01535 1.17424 0.90709 1.24991 0.97683 0.94983 0.96837 1.69944 1.41212 1.12664 1.30169 0.86436 0.82097 0.80210 0.78405 1.20600 1.21257 1.19661 1.20575 0.87811 0.85320 1.04156 0.84925 0.84335 0.85194 0.89723 0.89828 0.91558 0.88532 0.93373 0.93370 0.92864 0.86991 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.59 18.54 41.84 0.78 -4.82 16 2 C 0.26 2.86 15.34 -22.47 -0.34 2.52 16 3 C -0.04 -0.36 5.72 -107.04 -0.61 -0.98 16 4 C -0.07 -0.63 9.77 -39.27 -0.38 -1.01 16 5 C -0.11 -1.02 9.60 -39.52 -0.38 -1.40 16 6 C -0.05 -0.60 5.83 -104.40 -0.61 -1.21 16 7 C -0.07 -0.72 5.76 -104.62 -0.60 -1.33 16 8 C -0.07 -0.65 9.29 -39.01 -0.36 -1.02 16 9 C -0.10 -1.03 5.87 -27.77 -0.16 -1.20 16 10 C 0.11 1.42 6.47 -3.50 -0.02 1.39 16 11 N -0.63 -10.14 2.92 -174.07 -0.51 -10.64 16 12 C 0.52 11.25 7.71 -10.99 -0.08 11.16 16 13 O -0.54 -13.41 14.95 5.56 0.08 -13.32 16 14 C 0.01 0.16 3.88 -29.03 -0.11 0.05 16 15 C -0.51 -14.30 8.92 -34.44 -0.31 -14.60 16 16 H 0.07 2.20 6.75 -52.49 -0.35 1.85 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -25.42 13.29 55.43 0.74 -24.69 16 19 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.14 1.84 6.07 -5.02 -0.03 1.81 16 24 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 25 H 0.14 0.99 8.05 -52.49 -0.42 0.57 16 26 H 0.13 1.00 8.05 -52.49 -0.42 0.58 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 1.40 7.08 -51.93 -0.37 1.04 16 31 H 0.05 1.17 7.58 -51.93 -0.39 0.77 16 32 H 0.05 1.16 8.11 -51.93 -0.42 0.74 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.11 1.54 6.19 -51.93 -0.32 1.22 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 306.96 15.07 4.63 4.63 Total: -1.00 -32.46 306.96 -7.37 -39.83 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -3.95 Total: -3.20 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -4.11 Total: -4.35 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 1.00 Total: -40.15 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.46 -7.37 -39.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143193929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.396 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds