Wall clock time and date at job start Mon Mar 30 2020 01:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39661 * 120.25675 * 19.34879 * 3 2 1 5 5 C 1.37635 * 119.55996 * 180.22211 * 4 3 2 6 6 C 1.39010 * 120.73129 * 359.92077 * 5 4 3 7 7 C 1.37844 * 120.06930 * 359.71417 * 6 5 4 8 8 C 1.38707 * 119.66792 * 0.52289 * 7 6 5 9 9 C 1.50635 * 122.85276 * 180.76774 * 7 6 5 10 10 C 1.53270 * 110.83382 * 340.05468 * 9 7 6 11 11 N 1.47238 * 107.60747 * 47.68511 * 10 9 7 12 12 C 1.34774 * 121.33801 * 115.63608 * 11 10 9 13 13 O 1.21277 * 120.00513 * 359.71303 * 12 11 10 14 14 C 1.50700 * 119.99464 * 179.71075 * 12 11 10 15 15 C 1.50702 * 109.46869 * 179.97438 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.46661 * 117.31733 * 295.35975 * 11 10 9 24 24 H 1.08004 * 120.21385 * 0.22192 * 4 3 2 25 25 H 1.08001 * 119.63607 * 179.97438 * 5 4 3 26 26 H 1.07993 * 119.76246 * 179.61574 * 8 7 6 27 27 H 1.08994 * 109.19765 * 100.52249 * 9 7 6 28 28 H 1.09001 * 109.19780 * 219.80864 * 9 7 6 29 29 H 1.08995 * 109.89953 * 288.17594 * 10 9 7 30 30 H 1.09000 * 109.91358 * 167.19542 * 10 9 7 31 31 H 1.09004 * 109.47210 * 60.00192 * 14 12 11 32 32 H 1.08994 * 109.47551 * 299.99844 * 14 12 11 33 33 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 34 34 H 1.08999 * 109.43216 * 164.67142 * 23 11 10 35 35 H 1.09004 * 109.43380 * 284.57276 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2722 -1.1373 -0.3997 5 6 4.6485 -1.1224 -0.3898 6 6 5.3437 0.0124 0.0118 7 6 4.6562 1.1421 0.4006 8 6 3.2692 1.1362 0.3991 9 6 5.3454 2.4106 0.8308 10 6 6.7942 2.1302 1.2452 11 7 7.4033 1.2941 0.1974 12 6 8.4306 1.7445 -0.5497 13 8 8.8684 2.8609 -0.3688 14 6 9.0355 0.8606 -1.6098 15 6 10.1581 1.5954 -2.2960 16 1 10.4088 2.6017 -1.9943 17 6 10.8693 0.9808 -3.3048 18 7 10.5643 -0.2447 -3.6719 19 14 12.2658 1.8889 -4.1501 20 1 13.5370 1.6226 -3.4301 21 1 12.3841 1.4186 -5.5537 22 1 11.9866 3.3474 -4.1385 23 6 6.8511 -0.0507 0.0036 24 1 2.7403 -2.0230 -0.7145 25 1 5.1943 -2.0018 -0.6982 26 1 2.7290 2.0184 0.7093 27 1 5.3381 3.1206 0.0039 28 1 4.8090 2.8408 1.6765 29 1 6.8117 1.5997 2.1972 30 1 7.3429 3.0678 1.3344 31 1 8.2725 0.5977 -2.3425 32 1 9.4238 -0.0471 -1.1480 33 1 11.0645 -0.6770 -4.3818 34 1 7.1923 -0.4486 -0.9521 35 1 7.1905 -0.7016 0.8094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143193929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:59 Heat of formation + Delta-G solvation = -6.098414 kcal Electronic energy + Delta-G solvation = -19409.043112 eV Core-core repulsion = 16370.813421 eV Total energy + Delta-G solvation = -3038.229691 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.44000 -40.05753 -37.91724 -36.65584 -35.12763 -34.06543 -32.61406 -31.29985 -30.03305 -27.38967 -25.84239 -24.40508 -23.48051 -22.59395 -20.08761 -18.91689 -18.58916 -17.66657 -17.34799 -16.74438 -16.41033 -15.93247 -15.85194 -15.43258 -15.22104 -14.83850 -14.46229 -14.35514 -14.09380 -14.03738 -13.92671 -13.55605 -13.23190 -13.10285 -13.03017 -12.74434 -12.57352 -12.38269 -12.20028 -11.97986 -11.74599 -11.35641 -10.59290 -10.48999 -9.86225 -9.62540 -9.49900 -8.22644 -6.28897 -0.22672 0.38498 1.42572 1.42810 1.55210 1.59596 1.87527 1.89324 2.14909 2.46359 2.82795 2.86553 3.13005 3.63264 3.74866 3.91020 4.02161 4.18406 4.25579 4.41917 4.44082 4.55411 4.63543 4.78734 4.86400 4.91510 5.01120 5.09001 5.17330 5.25708 5.31495 5.33661 5.55338 5.63624 5.79189 5.86299 6.09113 6.42520 6.56085 6.83886 7.36628 7.48006 8.89112 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.028509 B = 0.004079 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.899233 B = 6862.673750 C = 7411.138568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.283 3.717 3 C -0.042 4.042 4 C -0.064 4.064 5 C -0.110 4.110 6 C -0.065 4.065 7 C -0.080 4.080 8 C -0.062 4.062 9 C -0.090 4.090 10 C 0.105 3.895 11 N -0.622 5.622 12 C 0.522 3.478 13 O -0.584 6.584 14 C 0.013 3.987 15 C -0.538 4.538 16 H 0.052 0.948 17 C 0.014 3.986 18 N -0.920 5.920 19 Si 0.959 3.041 20 H -0.272 1.272 21 H -0.274 1.274 22 H -0.276 1.276 23 C 0.141 3.859 24 H 0.155 0.845 25 H 0.158 0.842 26 H 0.148 0.852 27 H 0.069 0.931 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.267 0.733 34 H 0.098 0.902 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.280 -3.410 9.813 16.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.031 4.031 3 C -0.045 4.045 4 C -0.084 4.084 5 C -0.128 4.128 6 C -0.067 4.067 7 C -0.080 4.080 8 C -0.083 4.083 9 C -0.128 4.128 10 C -0.017 4.017 11 N -0.356 5.356 12 C 0.314 3.686 13 O -0.463 6.463 14 C -0.026 4.026 15 C -0.576 4.576 16 H 0.071 0.929 17 C -0.185 4.185 18 N -0.560 5.560 19 Si 0.784 3.216 20 H -0.197 1.197 21 H -0.199 1.199 22 H -0.201 1.201 23 C 0.018 3.982 24 H 0.173 0.827 25 H 0.176 0.824 26 H 0.165 0.835 27 H 0.087 0.913 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.755 -2.949 9.783 17.948 hybrid contribution 1.178 0.397 -0.659 1.407 sum -13.577 -2.551 9.125 16.556 Atomic orbital electron populations 1.81276 1.13322 1.09031 1.10654 1.25855 0.92679 0.92352 0.92215 1.15939 0.83299 0.97266 1.08024 1.21288 0.93915 0.97094 0.96147 1.21211 0.93803 0.98442 0.99343 1.20225 0.95213 0.94273 0.96955 1.19476 0.93004 0.95343 1.00169 1.21272 0.92983 0.97253 0.96778 1.20899 0.94689 0.94402 1.02812 1.21797 0.92871 0.96383 0.90655 1.48228 1.33890 1.16817 1.36654 1.21476 0.78296 0.87317 0.81561 1.90507 1.62870 1.22820 1.70121 1.19058 0.96013 0.95138 0.92377 1.21387 1.16524 1.01136 1.18598 0.92942 1.25707 0.99778 0.95796 0.97231 1.70005 1.42034 1.13481 1.30505 0.85534 0.79415 0.78712 0.77916 1.19726 1.19939 1.20104 1.20761 0.89333 0.83606 1.04466 0.82690 0.82449 0.83454 0.91295 0.86473 0.88691 0.90503 0.93982 0.93687 0.92399 0.88379 0.87617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.55 18.54 19.00 0.35 -11.20 16 2 C 0.28 5.60 15.34 88.33 1.35 6.95 16 3 C -0.04 -0.68 5.72 -21.43 -0.12 -0.80 16 4 C -0.06 -0.90 9.77 22.47 0.22 -0.68 16 5 C -0.11 -1.67 9.60 22.31 0.21 -1.46 16 6 C -0.07 -1.28 5.83 -19.72 -0.11 -1.40 16 7 C -0.08 -1.50 5.76 -19.87 -0.11 -1.61 16 8 C -0.06 -0.99 9.29 22.64 0.21 -0.78 16 9 C -0.09 -1.74 5.87 29.92 0.18 -1.57 16 10 C 0.10 2.59 6.47 86.33 0.56 3.15 16 11 N -0.62 -19.74 2.92 -823.04 -2.41 -22.15 16 12 C 0.52 23.09 7.71 87.66 0.68 23.76 16 13 O -0.58 -30.09 14.95 -3.02 -0.05 -30.14 16 14 C 0.01 0.66 3.88 29.10 0.11 0.78 16 15 C -0.54 -31.04 8.92 25.60 0.23 -30.81 16 16 H 0.05 3.21 6.75 -2.91 -0.02 3.19 16 17 C 0.01 0.78 5.46 84.66 0.46 1.24 16 18 N -0.92 -52.08 13.29 21.45 0.28 -51.80 16 19 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 23 C 0.14 3.39 6.07 85.66 0.52 3.91 16 24 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 25 H 0.16 1.78 8.05 -2.91 -0.02 1.75 16 26 H 0.15 1.80 8.05 -2.91 -0.02 1.77 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.12 1.48 8.10 -2.39 -0.02 1.46 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 2.24 7.08 -2.39 -0.02 2.22 16 31 H 0.04 2.10 7.58 -2.38 -0.02 2.08 16 32 H 0.05 2.22 8.11 -2.39 -0.02 2.20 16 33 H 0.27 14.20 8.31 -92.70 -0.77 13.43 16 34 H 0.10 2.66 6.19 -2.39 -0.01 2.64 16 35 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -71.27 306.96 5.71 -65.56 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: 1.11 Total: 2.56 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 4.38 Total: 0.69 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -1.77 Total: -85.15 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.05 Total: -30.14 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -71.27 5.71 -65.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143193929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.463 kcal (2) G-P(sol) polarization free energy of solvation -71.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds