Wall clock time and date at job start Mon Mar 30 2020 01:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00245 * 2 1 4 4 H 1.48510 * 109.46897 * 240.00400 * 3 2 1 5 5 H 1.48502 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47496 * 120.00155 * 3 2 1 7 7 C 1.37872 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00242 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00281 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47496 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99909 * 0.02562 * 10 9 7 12 12 N 1.34779 * 120.00490 * 180.02562 * 10 9 7 13 13 C 1.39585 * 120.00452 * 185.06343 * 12 10 9 14 14 C 1.37921 * 120.29129 * 44.29288 * 13 12 10 15 15 C 1.39115 * 120.71467 * 179.72752 * 14 13 12 16 16 C 1.36186 * 121.07131 * 0.29532 * 15 14 13 17 17 C 1.40539 * 119.95447 * 359.97438 * 16 15 14 18 18 C 1.40591 * 121.10783 * 180.02562 * 17 16 15 19 19 C 1.36156 * 119.96694 * 179.97438 * 18 17 16 20 20 C 1.39146 * 121.08123 * 359.97438 * 19 18 17 21 21 C 1.37930 * 120.71805 * 359.97438 * 20 19 18 22 22 N 1.39296 * 120.29981 * 180.02562 * 21 20 19 23 23 C 1.40908 * 120.29005 * 224.56565 * 13 12 10 24 24 H 0.97003 * 119.99744 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46966 * 59.99806 * 9 7 2 26 26 H 1.09000 * 109.47218 * 300.00561 * 9 7 2 27 27 H 0.97001 * 119.99510 * 5.06013 * 12 10 9 28 28 H 1.08003 * 119.63841 * 0.02562 * 14 13 12 29 29 H 1.08005 * 119.46325 * 180.28145 * 15 14 13 30 30 H 1.07994 * 120.02347 * 180.02562 * 16 15 14 31 31 H 1.07999 * 120.01563 * 0.02562 * 18 17 16 32 32 H 1.07999 * 119.46103 * 179.97438 * 19 18 17 33 33 H 1.08000 * 119.64500 * 180.02562 * 20 19 18 34 34 H 0.97004 * 120.00109 * 35.55869 * 22 21 20 35 35 H 0.97000 * 120.00289 * 215.56336 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1031 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 8 3.4227 -3.4231 -0.0001 12 7 1.7809 -4.9154 -0.0011 13 6 2.6834 -5.9748 0.1056 14 6 3.7101 -5.9242 1.0252 15 6 4.6112 -6.9776 1.1429 16 6 4.5088 -8.0817 0.3522 17 6 3.4799 -8.1693 -0.6010 18 6 3.3512 -9.2979 -1.4293 19 6 2.3452 -9.3586 -2.3447 20 6 1.4322 -8.3172 -2.4788 21 6 1.5236 -7.1934 -1.6843 22 7 0.6046 -6.1561 -1.8256 23 6 2.5570 -7.1030 -0.7291 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 0.8303 -5.0936 -0.0755 28 1 3.8127 -5.0595 1.6641 29 1 5.4049 -6.9186 1.8730 30 1 5.2174 -8.8897 0.4583 31 1 4.0496 -10.1168 -1.3390 32 1 2.2542 -10.2293 -2.9772 33 1 0.6428 -8.3898 -3.2123 34 1 -0.3208 -6.3538 -2.0391 35 1 0.8900 -5.2362 -1.7105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:07 Heat of formation + Delta-G solvation = 1.025679 kcal Electronic energy + Delta-G solvation = -19794.635000 eV Core-core repulsion = 16756.714232 eV Total energy + Delta-G solvation = -3037.920767 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.01287 -40.26434 -37.58320 -36.79960 -35.15911 -34.26609 -31.87493 -31.22247 -30.56252 -28.47179 -25.99724 -24.23895 -24.03360 -22.47850 -21.45718 -19.00246 -18.53141 -18.45891 -17.96572 -17.45087 -17.13317 -16.55661 -16.48033 -16.01001 -15.47511 -15.05984 -14.84321 -14.60935 -14.28349 -14.06021 -13.64190 -13.37518 -12.95039 -12.87481 -12.66295 -12.53958 -12.30173 -12.12943 -12.06656 -11.53189 -11.34963 -11.00779 -10.68268 -10.65554 -9.57352 -9.48035 -8.29233 -8.06576 -6.36693 -0.32038 0.10654 1.07479 1.39333 1.41354 1.50025 1.70465 2.09273 2.21634 2.42487 2.98332 3.06727 3.20118 3.81885 3.93590 4.06016 4.12836 4.31494 4.41985 4.53504 4.57774 4.66627 4.93075 4.95762 5.01892 5.15669 5.22544 5.35551 5.44187 5.50866 5.57524 5.67946 5.74551 5.91455 5.98128 6.12161 6.44012 6.54146 6.75293 6.89354 7.22397 7.35085 8.82478 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.029629 B = 0.004621 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.791064 B = 6057.913853 C = 6749.369997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.055 0.945 9 C 0.012 3.988 10 C 0.516 3.484 11 O -0.557 6.557 12 N -0.675 5.675 13 C 0.149 3.851 14 C -0.157 4.157 15 C -0.096 4.096 16 C -0.127 4.127 17 C -0.023 4.023 18 C -0.159 4.159 19 C -0.072 4.072 20 C -0.200 4.200 21 C 0.201 3.799 22 N -0.889 5.889 23 C -0.123 4.123 24 H 0.268 0.732 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.420 0.580 28 H 0.101 0.899 29 H 0.146 0.854 30 H 0.163 0.837 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.140 0.860 34 H 0.409 0.591 35 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.854 -20.444 -2.767 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.578 4.578 8 H 0.074 0.926 9 C -0.027 4.027 10 C 0.307 3.693 11 O -0.433 6.433 12 N -0.329 5.329 13 C 0.055 3.945 14 C -0.178 4.178 15 C -0.114 4.114 16 C -0.145 4.145 17 C -0.025 4.025 18 C -0.178 4.178 19 C -0.091 4.091 20 C -0.224 4.224 21 C 0.097 3.903 22 N -0.441 5.441 23 C -0.127 4.127 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.264 0.736 28 H 0.119 0.881 29 H 0.164 0.836 30 H 0.180 0.820 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.158 0.842 34 H 0.241 0.759 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.515 -20.107 -2.745 20.449 hybrid contribution -0.509 1.611 0.143 1.696 sum 2.006 -18.496 -2.602 18.785 Atomic orbital electron populations 1.70008 1.07015 1.28269 1.50731 1.25732 0.95841 1.02578 0.94315 0.85529 0.78393 0.78430 0.78862 1.19846 1.19799 1.19850 1.21284 0.93679 0.91039 1.51806 0.92647 1.19110 0.93996 0.90141 0.99476 1.21908 0.90462 0.83986 0.72990 1.90562 1.19050 1.84917 1.48769 1.44224 1.10874 1.04193 1.73620 1.17888 0.93427 0.88018 0.95216 1.21042 0.97719 0.99969 0.99082 1.20914 0.98162 0.92550 0.99784 1.21298 0.98522 0.99156 0.95540 1.18145 0.94038 0.93506 0.96763 1.21103 1.01193 0.97767 0.97746 1.20964 0.92946 0.98124 0.97021 1.21029 1.04203 0.95690 1.01442 1.17826 0.89906 0.90485 0.92046 1.42943 1.11184 1.06814 1.83111 1.18163 1.00753 0.96153 0.97633 0.92272 0.93076 0.93470 0.73642 0.88102 0.83613 0.81984 0.82862 0.82893 0.84231 0.75930 0.77014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.77 13.29 21.45 0.28 -52.49 16 2 C 0.01 0.82 5.46 84.65 0.46 1.29 16 3 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.54 -31.38 8.92 25.60 0.23 -31.15 16 8 H 0.06 3.40 6.75 -2.91 -0.02 3.38 16 9 C 0.01 0.61 5.46 29.10 0.16 0.77 16 10 C 0.52 23.89 7.49 87.66 0.66 24.55 16 11 O -0.56 -29.74 13.92 -3.07 -0.04 -29.78 16 12 N -0.68 -24.83 3.33 -302.90 -1.01 -25.83 16 13 C 0.15 5.34 6.06 38.49 0.23 5.57 16 14 C -0.16 -5.62 8.66 22.41 0.19 -5.43 16 15 C -0.10 -2.64 9.94 22.00 0.22 -2.42 16 16 C -0.13 -2.99 9.75 22.35 0.22 -2.77 16 17 C -0.02 -0.61 5.74 -21.31 -0.12 -0.74 16 18 C -0.16 -3.13 9.75 22.36 0.22 -2.92 16 19 C -0.07 -1.31 9.93 22.00 0.22 -1.09 16 20 C -0.20 -4.29 9.92 22.41 0.22 -4.07 16 21 C 0.20 5.41 6.75 38.56 0.26 5.67 16 22 N -0.89 -21.83 7.41 -50.89 -0.38 -22.21 16 23 C -0.12 -3.81 5.76 -21.12 -0.12 -3.93 16 24 H 0.27 14.48 8.31 -92.71 -0.77 13.70 16 25 H 0.05 2.53 8.14 -2.38 -0.02 2.51 16 26 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.42 13.13 6.44 -92.71 -0.60 12.53 16 28 H 0.10 4.06 7.19 -2.91 -0.02 4.04 16 29 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 30 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 32 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 33 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.41 7.52 8.95 -92.71 -0.83 6.69 16 35 H 0.40 11.38 5.96 -92.71 -0.55 10.83 16 Total: -1.00 -70.51 298.58 3.10 -67.40 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: -0.83 Total: 32.64 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 3.05 Total: -16.67 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -1.10 Total: -100.53 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.04 Total: -29.78 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -70.51 3.10 -67.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.430 kcal (2) G-P(sol) polarization free energy of solvation -70.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds