Wall clock time and date at job start Mon Mar 30 2020 01:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39550 * 120.04507 * 67.63121 * 3 2 1 5 5 C 1.37925 * 119.75681 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.10277 * 359.97438 * 5 4 3 7 7 C 1.38484 * 120.59477 * 359.95061 * 6 5 4 8 8 C 1.38142 * 119.90560 * 0.13836 * 7 6 5 9 9 C 1.51344 * 109.85659 * 179.90907 * 8 7 6 10 10 C 1.54355 * 105.14980 * 342.74647 * 9 8 7 11 11 C 1.51394 * 130.42677 * 179.87547 * 7 6 5 12 12 H 1.08989 * 110.30840 * 78.32939 * 11 7 6 13 13 N 1.46506 * 110.29901 * 316.27328 * 11 7 6 14 14 C 1.34774 * 119.99539 * 87.77874 * 13 11 7 15 15 O 1.21279 * 120.00472 * 359.97438 * 14 13 11 16 16 C 1.50706 * 120.00020 * 179.97438 * 14 13 11 17 17 C 1.50698 * 109.47294 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99819 * 0.02562 * 17 16 14 19 19 C 1.37875 * 120.00046 * 179.97438 * 17 16 14 20 20 N 1.31511 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47261 * 60.00310 * 21 19 17 24 24 H 1.48500 * 109.47454 * 300.00304 * 21 19 17 25 25 H 1.08001 * 120.12505 * 359.96219 * 4 3 2 26 26 H 1.08003 * 119.94493 * 180.02562 * 5 4 3 27 27 H 1.08007 * 119.72711 * 179.97438 * 6 5 4 28 28 H 1.09005 * 110.30856 * 223.83300 * 9 8 7 29 29 H 1.09001 * 110.31026 * 101.66810 * 9 8 7 30 30 H 1.08999 * 110.83141 * 268.08328 * 10 9 8 31 31 H 1.09011 * 110.99504 * 144.59365 * 10 9 8 32 32 H 0.96994 * 120.00705 * 267.77750 * 13 11 7 33 33 H 1.09001 * 109.46953 * 60.00333 * 16 14 13 34 34 H 1.08993 * 109.46894 * 299.99964 * 16 14 13 35 35 H 0.97001 * 119.99934 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2670 -0.4588 -1.1171 5 6 4.6462 -0.4550 -1.1109 6 6 5.3334 0.0028 -0.0020 7 6 4.6494 0.4622 1.1110 8 6 3.2680 0.4623 1.1190 9 6 2.7615 1.0050 2.4379 10 6 3.9683 0.9253 3.3970 11 6 5.1665 1.0029 2.4272 12 1 5.4918 2.0364 2.3099 13 7 6.2716 0.1754 2.9175 14 6 7.5352 0.4415 2.5318 15 8 7.7575 1.3656 1.7785 16 6 8.6722 -0.4092 3.0366 17 6 9.9705 0.0938 2.4601 18 1 9.9722 0.9447 1.7950 19 6 11.1561 -0.5317 2.7825 20 7 11.1541 -1.5675 3.5927 21 14 12.7655 0.0923 2.0684 22 1 13.8858 -0.7461 2.5657 23 1 12.9786 1.5017 2.4851 24 1 12.7117 0.0171 0.5863 25 1 2.7299 -0.8161 -1.9833 26 1 5.1902 -0.8095 -1.9740 27 1 6.4135 0.0027 -0.0035 28 1 1.9415 0.3907 2.8099 29 1 2.4379 2.0394 2.3221 30 1 3.9698 -0.0196 3.9403 31 1 3.9740 1.7681 4.0883 32 1 6.0939 -0.5639 3.5198 33 1 8.5157 -1.4436 2.7304 34 1 8.7118 -0.3543 4.1244 35 1 10.3184 -1.8913 3.9639 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143204834.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:40 Heat of formation + Delta-G solvation = 4.578067 kcal Electronic energy + Delta-G solvation = -19409.781448 eV Core-core repulsion = 16372.014724 eV Total energy + Delta-G solvation = -3037.766724 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.69695 -38.64109 -36.83781 -35.95515 -33.33131 -33.25726 -31.42137 -29.33184 -28.75868 -26.47615 -23.93607 -23.33750 -21.49983 -21.28886 -19.89288 -18.50787 -16.82815 -16.34228 -16.16789 -15.85953 -15.46462 -14.93075 -14.37458 -14.08844 -13.94962 -13.72397 -13.33395 -13.14859 -12.96645 -12.89187 -12.54253 -12.31373 -12.01187 -11.74400 -11.64017 -11.29965 -11.28096 -11.11796 -10.72806 -10.62350 -10.07257 -9.08114 -8.97423 -8.82800 -8.71104 -8.59287 -8.41036 -6.41462 -4.10997 0.63328 1.09940 2.47145 2.79051 3.46151 3.46418 3.49349 3.59536 3.67144 3.68346 3.82341 4.09148 4.38425 4.54197 4.68583 4.86488 4.91782 4.97317 5.23033 5.33219 5.35274 5.45975 5.49285 5.61004 5.73782 5.77513 5.85013 6.07333 6.17352 6.25431 6.39522 6.65912 6.74926 6.89709 6.99451 7.28384 7.81276 8.19783 8.52013 8.84576 9.04390 9.59048 10.98476 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.033056 B = 0.004026 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.855003 B = 6953.158762 C = 7436.060491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.262 3.738 3 C -0.030 4.030 4 C -0.070 4.070 5 C -0.122 4.122 6 C -0.052 4.052 7 C -0.101 4.101 8 C -0.049 4.049 9 C -0.085 4.085 10 C -0.123 4.123 11 C 0.182 3.818 12 H 0.104 0.896 13 N -0.741 5.741 14 C 0.521 3.479 15 O -0.536 6.536 16 C -0.008 4.008 17 C -0.590 4.590 18 H 0.069 0.931 19 C 0.015 3.985 20 N -0.914 5.914 21 Si 1.073 2.927 22 H -0.283 1.283 23 H -0.287 1.287 24 H -0.287 1.287 25 H 0.133 0.867 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.397 0.603 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.713 1.868 -3.629 16.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.053 4.053 3 C -0.033 4.033 4 C -0.090 4.090 5 C -0.140 4.140 6 C -0.071 4.071 7 C -0.103 4.103 8 C -0.052 4.052 9 C -0.122 4.122 10 C -0.161 4.161 11 C 0.076 3.924 12 H 0.122 0.878 13 N -0.394 5.394 14 C 0.310 3.690 15 O -0.411 6.411 16 C -0.048 4.048 17 C -0.628 4.628 18 H 0.088 0.912 19 C -0.188 4.188 20 N -0.551 5.551 21 Si 0.901 3.099 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.213 1.213 25 H 0.151 0.849 26 H 0.154 0.846 27 H 0.152 0.848 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.232 0.768 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.638 2.292 -4.191 16.352 hybrid contribution -1.394 -0.175 0.231 1.424 sum -17.032 2.117 -3.960 17.614 Atomic orbital electron populations 1.81230 1.12070 1.09235 1.07864 1.25778 0.92699 0.93378 0.93460 1.15501 0.83889 1.07823 0.96104 1.21064 0.94401 0.97296 0.96255 1.21051 0.93424 1.00704 0.98833 1.21092 1.01473 0.93298 0.91250 1.20957 0.92993 0.99473 0.96830 1.20534 0.94084 0.96270 0.94360 1.21108 0.98487 1.01770 0.90829 1.22600 0.92501 1.03761 0.97205 1.20357 0.86858 0.96530 0.88621 0.87787 1.46408 1.06346 1.34928 1.51756 1.21706 0.83027 0.84810 0.79412 1.90554 1.84062 1.31036 1.35496 1.19356 0.92423 0.95296 0.97696 1.21960 0.90898 1.18112 1.31840 0.91242 1.25898 1.02749 0.94655 0.95523 1.70834 1.30462 1.23905 1.29879 0.83468 0.74875 0.75643 0.75880 1.20865 1.21324 1.21316 0.84932 0.84619 0.84801 0.90171 0.89225 0.89950 0.89380 0.76842 0.94460 0.94479 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.70 18.54 41.84 0.78 -4.93 16 2 C 0.26 3.02 15.05 -22.47 -0.34 2.68 16 3 C -0.03 -0.32 5.73 -106.89 -0.61 -0.93 16 4 C -0.07 -0.67 9.75 -39.21 -0.38 -1.05 16 5 C -0.12 -1.29 10.03 -39.69 -0.40 -1.69 16 6 C -0.05 -0.70 9.91 -39.48 -0.39 -1.09 16 7 C -0.10 -1.29 5.79 -104.23 -0.60 -1.89 16 8 C -0.05 -0.54 6.04 -103.75 -0.63 -1.17 16 9 C -0.08 -0.75 6.43 -26.86 -0.17 -0.92 16 10 C -0.12 -1.11 6.76 -25.32 -0.17 -1.28 16 11 C 0.18 2.34 3.18 -68.03 -0.22 2.13 16 12 H 0.10 1.52 7.60 -51.94 -0.39 1.12 16 13 N -0.74 -11.20 5.10 -53.91 -0.27 -11.47 16 14 C 0.52 10.83 7.37 -10.98 -0.08 10.75 16 15 O -0.54 -12.83 14.73 5.56 0.08 -12.75 16 16 C -0.01 -0.20 4.77 -29.03 -0.14 -0.34 16 17 C -0.59 -16.63 8.92 -34.44 -0.31 -16.94 16 18 H 0.07 2.05 6.75 -52.48 -0.35 1.70 16 19 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 20 N -0.91 -26.88 13.65 55.43 0.76 -26.12 16 21 Si 1.07 25.21 29.90 -169.99 -5.08 20.13 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 25 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 26 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 27 H 0.13 2.13 7.28 -52.48 -0.38 1.75 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.67 7.81 -51.93 -0.41 0.26 16 31 H 0.09 0.69 8.14 -51.92 -0.42 0.26 16 32 H 0.40 5.03 8.40 -40.82 -0.34 4.69 16 33 H 0.04 0.89 8.01 -51.93 -0.42 0.47 16 34 H 0.04 0.89 8.01 -51.93 -0.42 0.47 16 35 H 0.27 7.60 7.22 -40.82 -0.29 7.30 16 LS Contribution 310.07 15.07 4.67 4.67 Total: -1.00 -32.90 310.07 -7.52 -40.42 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -3.92 Total: 1.46 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -4.54 Total: -11.42 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 1.26 Total: -42.51 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.90 -7.52 -40.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204834.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.002 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds