Wall clock time and date at job start Mon Mar 30 2020 01:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39550 * 120.04507 * 67.63121 * 3 2 1 5 5 C 1.37925 * 119.75681 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.10277 * 359.97438 * 5 4 3 7 7 C 1.38484 * 120.59477 * 359.95061 * 6 5 4 8 8 C 1.38142 * 119.90560 * 0.13836 * 7 6 5 9 9 C 1.51344 * 109.85659 * 179.90907 * 8 7 6 10 10 C 1.54355 * 105.14980 * 342.74647 * 9 8 7 11 11 C 1.51394 * 130.42677 * 179.87547 * 7 6 5 12 12 H 1.08989 * 110.30840 * 78.32939 * 11 7 6 13 13 N 1.46506 * 110.29901 * 316.27328 * 11 7 6 14 14 C 1.34774 * 119.99539 * 87.77874 * 13 11 7 15 15 O 1.21279 * 120.00472 * 359.97438 * 14 13 11 16 16 C 1.50706 * 120.00020 * 179.97438 * 14 13 11 17 17 C 1.50698 * 109.47294 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99819 * 0.02562 * 17 16 14 19 19 C 1.37875 * 120.00046 * 179.97438 * 17 16 14 20 20 N 1.31511 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47261 * 60.00310 * 21 19 17 24 24 H 1.48500 * 109.47454 * 300.00304 * 21 19 17 25 25 H 1.08001 * 120.12505 * 359.96219 * 4 3 2 26 26 H 1.08003 * 119.94493 * 180.02562 * 5 4 3 27 27 H 1.08007 * 119.72711 * 179.97438 * 6 5 4 28 28 H 1.09005 * 110.30856 * 223.83300 * 9 8 7 29 29 H 1.09001 * 110.31026 * 101.66810 * 9 8 7 30 30 H 1.08999 * 110.83141 * 268.08328 * 10 9 8 31 31 H 1.09011 * 110.99504 * 144.59365 * 10 9 8 32 32 H 0.96994 * 120.00705 * 267.77750 * 13 11 7 33 33 H 1.09001 * 109.46953 * 60.00333 * 16 14 13 34 34 H 1.08993 * 109.46894 * 299.99964 * 16 14 13 35 35 H 0.97001 * 119.99934 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2670 -0.4588 -1.1171 5 6 4.6462 -0.4550 -1.1109 6 6 5.3334 0.0028 -0.0020 7 6 4.6494 0.4622 1.1110 8 6 3.2680 0.4623 1.1190 9 6 2.7615 1.0050 2.4379 10 6 3.9683 0.9253 3.3970 11 6 5.1665 1.0029 2.4272 12 1 5.4918 2.0364 2.3099 13 7 6.2716 0.1754 2.9175 14 6 7.5352 0.4415 2.5318 15 8 7.7575 1.3656 1.7785 16 6 8.6722 -0.4092 3.0366 17 6 9.9705 0.0938 2.4601 18 1 9.9722 0.9447 1.7950 19 6 11.1561 -0.5317 2.7825 20 7 11.1541 -1.5675 3.5927 21 14 12.7655 0.0923 2.0684 22 1 13.8858 -0.7461 2.5657 23 1 12.9786 1.5017 2.4851 24 1 12.7117 0.0171 0.5863 25 1 2.7299 -0.8161 -1.9833 26 1 5.1902 -0.8095 -1.9740 27 1 6.4135 0.0027 -0.0035 28 1 1.9415 0.3907 2.8099 29 1 2.4379 2.0394 2.3221 30 1 3.9698 -0.0196 3.9403 31 1 3.9740 1.7681 4.0883 32 1 6.0939 -0.5639 3.5198 33 1 8.5157 -1.4436 2.7304 34 1 8.7118 -0.3543 4.1244 35 1 10.3184 -1.8913 3.9639 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143204834.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:40 Heat of formation + Delta-G solvation = -15.641091 kcal Electronic energy + Delta-G solvation = -19410.658217 eV Core-core repulsion = 16372.014724 eV Total energy + Delta-G solvation = -3038.643493 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.69042 -40.12803 -37.86290 -36.93328 -35.43148 -34.53640 -32.45239 -30.66825 -30.08421 -27.66746 -25.33418 -24.82389 -22.38908 -22.31556 -21.37597 -19.55257 -18.78707 -17.86109 -17.26399 -16.94242 -16.43308 -16.16493 -15.68831 -15.50193 -15.16911 -14.92965 -14.87557 -14.19536 -14.14381 -14.02359 -13.81919 -13.42642 -13.26610 -12.87121 -12.79664 -12.72731 -12.50002 -12.43190 -12.17429 -11.93248 -11.89988 -10.95391 -10.57311 -10.54461 -10.09952 -9.90105 -9.67154 -8.67504 -6.37186 -0.27668 0.23592 1.55332 1.56096 1.62233 1.81266 1.83504 1.86856 2.36761 2.59483 2.77547 2.82433 3.16279 3.25278 3.51688 3.86307 4.02818 4.08445 4.15093 4.29657 4.41539 4.46424 4.63561 4.74285 4.78371 4.79767 4.96376 5.02162 5.03594 5.10946 5.23394 5.33754 5.43972 5.62614 5.76505 5.85175 6.24559 6.38624 6.51772 6.77501 7.34729 7.48681 8.74861 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.033056 B = 0.004026 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.855003 B = 6953.158762 C = 7436.060491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.283 3.717 3 C -0.032 4.032 4 C -0.055 4.055 5 C -0.120 4.120 6 C -0.074 4.074 7 C -0.122 4.122 8 C -0.042 4.042 9 C -0.082 4.082 10 C -0.111 4.111 11 C 0.176 3.824 12 H 0.084 0.916 13 N -0.717 5.717 14 C 0.526 3.474 15 O -0.574 6.574 16 C -0.010 4.010 17 C -0.610 4.610 18 H 0.049 0.951 19 C -0.029 4.029 20 N -0.933 5.933 21 Si 1.115 2.885 22 H -0.278 1.278 23 H -0.275 1.275 24 H -0.274 1.274 25 H 0.163 0.837 26 H 0.155 0.845 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.412 0.588 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.355 1.804 -3.857 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.031 4.031 3 C -0.036 4.036 4 C -0.075 4.075 5 C -0.138 4.138 6 C -0.094 4.094 7 C -0.123 4.123 8 C -0.045 4.045 9 C -0.119 4.119 10 C -0.149 4.149 11 C 0.071 3.929 12 H 0.102 0.898 13 N -0.370 5.370 14 C 0.315 3.685 15 O -0.453 6.453 16 C -0.049 4.049 17 C -0.648 4.648 18 H 0.067 0.933 19 C -0.227 4.227 20 N -0.571 5.571 21 Si 0.936 3.064 22 H -0.203 1.203 23 H -0.200 1.200 24 H -0.199 1.199 25 H 0.180 0.820 26 H 0.173 0.827 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.248 0.752 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.345 2.205 -4.392 18.028 hybrid contribution -0.952 -0.176 0.277 1.007 sum -18.297 2.029 -4.115 18.864 Atomic orbital electron populations 1.81268 1.12889 1.10323 1.08844 1.25695 0.92453 0.92434 0.92545 1.15575 0.83490 1.08042 0.96451 1.21364 0.93865 0.95572 0.96719 1.21219 0.94017 1.00085 0.98450 1.21029 1.00006 0.95317 0.93020 1.20903 0.93970 1.00825 0.96607 1.20691 0.93115 0.95398 0.95307 1.21189 0.98545 1.02745 0.89404 1.22615 0.90208 1.05377 0.96657 1.20604 0.87073 0.94879 0.90319 0.89835 1.46076 1.05192 1.35074 1.50674 1.21065 0.84283 0.83958 0.79201 1.90533 1.84947 1.32514 1.37275 1.19232 0.92656 0.95643 0.97400 1.22232 0.93112 1.17685 1.31792 0.93272 1.27223 1.06033 0.94258 0.95208 1.70934 1.30279 1.24849 1.31002 0.82946 0.71548 0.75810 0.76057 1.20292 1.20018 1.19905 0.81958 0.82715 0.88292 0.88623 0.87880 0.88476 0.87637 0.75168 0.94577 0.94529 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.14 18.54 19.01 0.35 -10.79 16 2 C 0.28 5.77 15.05 88.33 1.33 7.10 16 3 C -0.03 -0.60 5.73 -21.33 -0.12 -0.72 16 4 C -0.05 -0.91 9.75 22.51 0.22 -0.69 16 5 C -0.12 -2.37 10.03 22.20 0.22 -2.15 16 6 C -0.07 -2.01 9.91 22.33 0.22 -1.79 16 7 C -0.12 -3.03 5.79 -19.61 -0.11 -3.14 16 8 C -0.04 -0.83 6.04 -19.30 -0.12 -0.95 16 9 C -0.08 -1.20 6.43 30.51 0.20 -1.00 16 10 C -0.11 -1.71 6.76 31.51 0.21 -1.50 16 11 C 0.18 4.42 3.18 44.92 0.14 4.57 16 12 H 0.08 2.47 7.60 -2.39 -0.02 2.45 16 13 N -0.72 -21.61 5.10 -442.86 -2.26 -23.87 16 14 C 0.53 22.50 7.37 87.66 0.65 23.15 16 15 O -0.57 -28.60 14.73 -3.02 -0.04 -28.64 16 16 C -0.01 -0.48 4.77 29.10 0.14 -0.34 16 17 C -0.61 -35.32 8.92 25.60 0.23 -35.09 16 18 H 0.05 3.00 6.75 -2.91 -0.02 2.98 16 19 C -0.03 -1.67 5.46 84.65 0.46 -1.21 16 20 N -0.93 -55.41 13.65 21.45 0.29 -55.12 16 21 Si 1.11 50.87 29.90 68.60 2.05 52.92 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 26 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 27 H 0.10 3.36 7.28 -2.91 -0.02 3.34 16 28 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.10 1.25 7.81 -2.39 -0.02 1.24 16 31 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.41 10.04 8.40 -92.71 -0.78 9.26 16 33 H 0.04 1.77 8.01 -2.39 -0.02 1.75 16 34 H 0.04 1.79 8.01 -2.39 -0.02 1.77 16 35 H 0.26 15.15 7.22 -92.71 -0.67 14.48 16 Total: -1.00 -72.64 310.07 4.51 -68.12 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.45 Total: 11.13 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 3.67 Total: -13.76 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -1.61 Total: -89.77 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.04 Total: -28.64 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 2.05 Total: 52.92 kcal Total: -72.64 4.51 -68.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204834.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.481 kcal (2) G-P(sol) polarization free energy of solvation -72.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds