Wall clock time and date at job start Mon Mar 30 2020 01:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31089 * 1 3 3 Si 1.86805 * 119.99634 * 2 1 4 4 H 1.48503 * 109.46672 * 270.00136 * 3 2 1 5 5 H 1.48499 * 109.47154 * 29.99993 * 3 2 1 6 6 H 1.48495 * 109.46984 * 150.00340 * 3 2 1 7 7 C 1.39671 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.40903 * 120.00085 * 359.97438 * 7 2 1 10 10 C 1.38970 * 126.93447 * 338.85959 * 9 7 2 11 11 N 1.35659 * 109.23579 * 179.41696 * 10 9 7 12 12 H 0.97000 * 124.69966 * 179.97438 * 11 10 9 13 13 C 1.38136 * 110.60659 * 0.70082 * 11 10 9 14 14 C 1.39204 * 132.74933 * 179.21520 * 13 11 10 15 15 C 1.37944 * 120.13781 * 179.97438 * 14 13 11 16 16 C 1.38497 * 120.70297 * 359.97438 * 15 14 13 17 17 C 1.38691 * 120.15690 * 0.02822 * 16 15 14 18 18 N 1.39407 * 120.22892 * 179.97438 * 17 16 15 19 19 C 1.46502 * 119.99682 * 354.61823 * 18 17 16 20 20 C 1.53842 * 113.65286 * 155.00195 * 19 18 17 21 21 C 1.51582 * 86.75582 * 139.27204 * 20 19 18 22 22 O 1.20758 * 135.78509 * 154.86311 * 21 20 19 23 23 C 1.51580 * 88.43329 * 334.84365 * 21 20 19 24 24 C 1.39809 * 119.54257 * 0.24541 * 17 16 15 25 25 H 0.96995 * 119.99930 * 359.97438 * 1 2 3 26 26 H 1.08001 * 125.37774 * 0.02562 * 10 9 7 27 27 H 1.08004 * 119.93003 * 0.02562 * 14 13 11 28 28 H 1.07991 * 119.64797 * 180.02562 * 15 14 13 29 29 H 1.08001 * 119.92155 * 179.97438 * 16 15 14 30 30 H 0.96993 * 120.00380 * 174.62058 * 18 17 16 31 31 H 1.08999 * 112.94822 * 23.60796 * 19 18 17 32 32 H 1.09004 * 113.66418 * 253.72899 * 20 19 18 33 33 H 1.08994 * 113.67313 * 24.80504 * 20 19 18 34 34 H 1.08999 * 113.66605 * 270.68619 * 23 21 20 35 35 H 1.09002 * 113.66978 * 139.62200 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2448 1.6178 0.0000 4 1 2.4922 2.0465 -1.4001 5 1 1.4422 2.6527 0.7000 6 1 3.5424 1.4403 0.6999 7 6 2.0093 -1.2096 -0.0005 8 1 3.0893 -1.2095 -0.0010 9 6 1.3048 -2.4299 -0.0005 10 6 -0.0098 -2.6352 0.4005 11 7 -0.3269 -3.9443 0.2395 12 1 -1.1899 -4.3335 0.4511 13 6 0.7543 -4.6495 -0.2523 14 6 0.9420 -5.9921 -0.5684 15 6 2.1581 -6.4258 -1.0541 16 6 3.2051 -5.5373 -1.2343 17 6 3.0408 -4.1952 -0.9260 18 7 4.0939 -3.2996 -1.1063 19 6 5.4132 -3.7922 -1.5101 20 6 6.2674 -2.7414 -2.2402 21 6 7.4434 -3.2683 -1.4418 22 8 8.6421 -3.2993 -1.5846 23 6 6.4625 -3.7390 -0.3864 24 6 1.8136 -3.7475 -0.4278 25 1 -0.4850 0.8400 0.0004 26 1 -0.6769 -1.8712 0.7717 27 1 0.1335 -6.6956 -0.4339 28 1 2.2949 -7.4691 -1.2972 29 1 4.1520 -5.8907 -1.6150 30 1 3.9531 -2.3505 -0.9644 31 1 5.3695 -4.7532 -2.0226 32 1 6.3535 -2.9159 -3.3127 33 1 5.9989 -1.7134 -1.9970 34 1 6.2487 -2.9908 0.3769 35 1 6.7053 -4.7157 0.0321 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167344510.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:43 Heat of formation + Delta-G solvation = 45.040324 kcal Electronic energy + Delta-G solvation = -19884.416661 eV Core-core repulsion = 16848.404512 eV Total energy + Delta-G solvation = -3036.012149 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.13682 -39.55319 -37.20736 -35.56347 -33.75589 -32.62767 -29.65894 -27.96212 -27.30254 -26.10980 -24.64738 -23.17825 -21.11368 -20.30982 -19.51250 -18.92937 -17.57740 -16.21087 -15.87545 -15.74283 -15.44292 -15.24862 -14.54775 -14.41413 -14.01955 -13.51613 -13.24047 -12.82748 -12.65968 -12.56317 -12.17402 -11.98383 -11.48033 -11.34817 -11.23001 -11.17411 -10.77103 -10.67885 -10.47243 -9.85343 -9.81563 -9.45558 -9.36143 -9.09940 -7.50046 -7.02851 -6.52656 -6.09942 -4.04246 1.81659 2.41271 2.70641 3.05295 3.13575 3.14969 3.76779 4.03012 4.17531 4.22509 4.45478 4.59517 4.78335 4.95219 5.01614 5.24852 5.51878 5.52669 5.63671 5.78032 5.81695 5.91788 6.06374 6.16545 6.45590 6.60190 6.81249 7.07749 7.12777 7.21085 7.41007 7.47514 7.48847 7.79131 7.87436 8.17058 8.34560 8.51331 8.67622 8.99416 9.10120 9.19955 10.49080 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.012346 B = 0.008043 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.336961 B = 3480.311485 C = 5591.718011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.433 4.433 8 H 0.066 0.934 9 C 0.035 3.965 10 C -0.088 4.088 11 N -0.588 5.588 12 H 0.394 0.606 13 C 0.118 3.882 14 C -0.204 4.204 15 C -0.069 4.069 16 C -0.275 4.275 17 C 0.273 3.727 18 N -0.728 5.728 19 C 0.147 3.853 20 C -0.205 4.205 21 C 0.363 3.637 22 O -0.433 6.433 23 C -0.212 4.212 24 C -0.184 4.184 25 H 0.272 0.728 26 H 0.173 0.827 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.410 0.590 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.114 -5.326 -1.638 7.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.148 4.148 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.466 4.466 8 H 0.084 0.916 9 C 0.030 3.970 10 C -0.212 4.212 11 N -0.188 5.188 12 H 0.227 0.773 13 C 0.005 3.995 14 C -0.228 4.228 15 C -0.089 4.089 16 C -0.300 4.300 17 C 0.170 3.830 18 N -0.361 5.361 19 C 0.038 3.962 20 C -0.243 4.243 21 C 0.237 3.763 22 O -0.305 6.305 23 C -0.252 4.252 24 C -0.193 4.193 25 H 0.083 0.917 26 H 0.190 0.810 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.251 0.749 31 H 0.131 0.869 32 H 0.115 0.885 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.587 -5.163 -1.718 7.799 hybrid contribution -0.306 1.002 0.106 1.053 sum 5.281 -4.161 -1.612 6.914 Atomic orbital electron populations 1.69689 1.06953 1.27898 1.41698 1.25586 0.94870 1.00267 0.94050 0.86336 0.80093 0.81579 0.78746 1.19977 1.20595 1.19084 1.18488 0.92974 0.89210 1.45973 0.91591 1.17865 0.92016 0.89337 0.97813 1.22601 1.00155 0.82677 1.15788 1.41469 1.11061 1.08663 1.57584 0.77310 1.17919 0.88117 0.92281 1.01166 1.19574 0.98319 0.92263 1.12602 1.20112 0.92339 0.97507 0.98935 1.19984 1.00138 0.92010 1.17885 1.17152 0.85745 0.88831 0.91233 1.44658 1.06343 1.09411 1.75648 1.21765 0.82582 0.97788 0.94034 1.24448 0.95169 1.02419 1.02302 1.25490 0.87771 0.73928 0.89141 1.90400 1.15209 1.48902 1.76000 1.24690 0.95951 1.04316 1.00252 1.18982 0.92767 0.96137 1.11464 0.91730 0.80992 0.88558 0.87801 0.87829 0.74913 0.86872 0.88480 0.85961 0.86002 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.18 10.78 55.54 0.60 -20.58 16 2 C 0.06 1.56 5.47 -17.33 -0.09 1.46 16 3 Si 0.91 18.62 29.56 -169.99 -5.02 13.60 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.43 -10.88 8.75 -38.04 -0.33 -11.22 16 8 H 0.07 1.54 5.78 -52.49 -0.30 1.24 16 9 C 0.03 0.89 5.99 -104.81 -0.63 0.26 16 10 C -0.09 -2.17 10.78 -15.59 -0.17 -2.34 16 11 N -0.59 -12.53 5.99 -9.79 -0.06 -12.59 16 12 H 0.39 6.90 8.96 -40.82 -0.37 6.53 16 13 C 0.12 2.59 7.23 -83.91 -0.61 1.99 16 14 C -0.20 -3.89 10.07 -39.33 -0.40 -4.29 16 15 C -0.07 -1.22 10.00 -39.59 -0.40 -1.61 16 16 C -0.28 -4.97 9.30 -39.32 -0.37 -5.33 16 17 C 0.27 5.51 6.67 -83.66 -0.56 4.96 16 18 N -0.73 -12.59 5.52 -51.29 -0.28 -12.87 16 19 C 0.15 1.92 4.16 -67.14 -0.28 1.64 16 20 C -0.20 -2.33 7.80 -27.01 -0.21 -2.54 16 21 C 0.36 4.54 9.14 -28.25 -0.26 4.28 16 22 O -0.43 -6.70 17.99 6.00 0.11 -6.59 16 23 C -0.21 -2.54 7.85 -27.02 -0.21 -2.75 16 24 C -0.18 -4.29 6.27 -104.75 -0.66 -4.95 16 25 H 0.27 6.46 8.30 -40.82 -0.34 6.12 16 26 H 0.17 4.36 6.33 -52.49 -0.33 4.03 16 27 H 0.10 1.60 8.06 -52.48 -0.42 1.17 16 28 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.10 1.59 5.97 -52.49 -0.31 1.27 16 30 H 0.41 7.55 5.80 -40.82 -0.24 7.31 16 31 H 0.11 1.38 5.99 -51.93 -0.31 1.07 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.12 1.35 8.12 -51.93 -0.42 0.93 16 34 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 296.43 15.07 4.47 4.47 Total: -1.00 -28.64 296.43 -8.89 -37.53 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -3.53 Total: 17.48 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -5.16 Total: -20.44 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.26 Total: -46.04 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: 0.11 Total: -6.59 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.60 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.64 -8.89 -37.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167344510.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.566 kcal (2) G-P(sol) polarization free energy of solvation -28.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds