Wall clock time and date at job start Mon Mar 30 2020 01:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37101 * 120.00123 * 2 1 4 4 H 1.07996 * 119.99912 * 204.39653 * 3 2 1 5 5 C 1.38946 * 119.99765 * 24.40325 * 3 2 1 6 6 N 1.31411 * 120.00103 * 12.64859 * 5 3 2 7 7 Si 1.86801 * 119.99915 * 192.65529 * 5 3 2 8 8 H 1.48504 * 109.47049 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.47535 * 119.99429 * 7 5 3 10 10 H 1.48497 * 109.46896 * 239.99662 * 7 5 3 11 11 C 1.34776 * 119.99713 * 180.02562 * 2 1 3 12 12 O 1.21298 * 119.99691 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00328 * 359.97438 * 11 2 1 14 14 C 1.50696 * 109.47215 * 180.02562 * 13 11 2 15 15 N 1.31884 * 119.61593 * 269.97853 * 14 13 11 16 16 C 1.31858 * 121.72540 * 179.97438 * 15 14 13 17 17 C 1.38226 * 120.76389 * 359.74354 * 16 15 14 18 18 C 1.38634 * 119.15702 * 0.52978 * 17 16 15 19 19 C 1.38180 * 119.61854 * 90.00178 * 14 13 11 20 20 C 1.50697 * 120.41895 * 0.02562 * 19 14 13 21 21 F 1.39892 * 109.47434 * 299.98082 * 20 19 14 22 22 F 1.39909 * 109.47096 * 59.98049 * 20 19 14 23 23 H 1.08999 * 109.47430 * 265.85964 * 1 2 3 24 24 H 1.09000 * 109.47004 * 25.86141 * 1 2 3 25 25 H 1.08998 * 109.47054 * 145.85942 * 1 2 3 26 26 H 0.97006 * 119.99758 * 180.02562 * 6 5 3 27 27 H 1.09003 * 109.47008 * 60.00317 * 13 11 2 28 28 H 1.09003 * 109.46838 * 300.00277 * 13 11 2 29 29 H 1.07995 * 119.61873 * 179.97438 * 16 15 14 30 30 H 1.08001 * 120.41926 * 180.26418 * 17 16 15 31 31 H 1.08003 * 120.78897 * 179.75493 * 18 17 16 32 32 H 1.09006 * 109.47595 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2290 -0.3863 5 6 1.5489 2.3369 0.4972 6 7 0.4348 2.2490 1.1886 7 14 2.3235 4.0073 0.1825 8 1 3.5644 3.8352 -0.6149 9 1 1.3683 4.8629 -0.5661 10 1 2.6542 4.6516 1.4790 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3646 -3.6177 -0.0005 15 7 2.7878 -4.1134 -1.1471 16 6 3.6444 -5.1147 -1.1956 17 6 4.1367 -5.6808 -0.0347 18 6 3.7102 -5.1901 1.1897 19 6 2.8083 -4.1368 1.2007 20 6 2.3188 -3.5652 2.5063 21 9 2.6642 -2.2117 2.5815 22 9 0.9278 -3.6963 2.5804 23 1 -0.3634 -0.0742 1.0250 24 1 -0.3633 0.9248 -0.4483 25 1 -0.3633 -0.8505 -0.5767 26 1 0.0146 3.0516 1.5353 27 1 0.7583 -2.5299 -0.8903 28 1 0.7590 -2.5302 0.8897 29 1 3.9679 -5.4943 -2.1535 30 1 4.8414 -6.4979 -0.0810 31 1 4.0748 -5.6154 2.1131 32 1 2.7791 -4.1042 3.3344 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178436148.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:31 Heat of formation + Delta-G solvation = -86.213651 kcal Electronic energy + Delta-G solvation = -21166.278922 eV Core-core repulsion = 17570.345644 eV Total energy + Delta-G solvation = -3595.933278 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.74022 -46.62656 -40.21178 -38.15572 -34.61030 -33.01066 -32.76088 -31.48696 -28.55733 -26.26229 -25.86658 -24.28122 -22.77678 -21.89317 -18.95044 -17.62146 -17.14492 -16.87897 -16.77593 -16.15065 -15.93469 -15.57947 -14.62864 -14.22538 -14.09138 -13.78567 -13.56966 -13.38668 -13.08040 -12.96203 -12.62406 -12.12918 -12.06551 -11.79305 -11.38347 -11.17890 -11.11225 -10.85599 -10.80160 -10.26218 -10.16786 -9.88412 -9.32186 -9.00632 -8.92612 -8.27506 -7.55297 -6.22949 -3.78499 1.03482 1.30382 3.21131 3.30666 3.38024 3.75275 3.84469 3.99850 4.22322 4.26267 4.44598 4.63495 4.80884 4.90954 5.09733 5.21103 5.23493 5.30673 5.47518 5.60345 5.80499 5.95441 6.06731 6.10687 6.23073 6.46118 6.69304 6.93793 7.28097 7.65782 8.09649 8.23653 8.58557 9.28407 9.51691 10.08473 10.82385 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027561 B = 0.006039 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.676322 B = 4635.430049 C = 4968.800750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.447 5.447 3 C -0.300 4.300 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.883 5.883 7 Si 0.925 3.075 8 H -0.269 1.269 9 H -0.281 1.281 10 H -0.282 1.282 11 C 0.467 3.533 12 O -0.580 6.580 13 C -0.108 4.108 14 C 0.217 3.783 15 N -0.478 5.478 16 C 0.122 3.878 17 C -0.192 4.192 18 C -0.041 4.041 19 C -0.216 4.216 20 C 0.316 3.684 21 F -0.176 7.176 22 F -0.200 7.200 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.025 0.975 26 H 0.266 0.734 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.158 0.842 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.237 -14.864 1.208 14.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.166 5.166 3 C -0.428 4.428 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.523 5.523 7 Si 0.752 3.248 8 H -0.193 1.193 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.254 3.746 12 O -0.464 6.464 13 C -0.149 4.149 14 C 0.079 3.921 15 N -0.186 5.186 16 C -0.036 4.036 17 C -0.211 4.211 18 C -0.067 4.067 19 C -0.219 4.219 20 C 0.262 3.738 21 F -0.157 7.157 22 F -0.181 7.181 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.175 0.825 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.353 -14.301 0.517 14.374 hybrid contribution 0.425 0.570 0.752 1.035 sum 1.778 -13.731 1.268 13.904 Atomic orbital electron populations 1.21493 0.81314 0.99893 1.00628 1.43471 1.05382 1.04490 1.63244 1.19654 1.00542 0.83980 1.38621 0.88544 1.25327 0.96719 1.00019 0.95307 1.70013 1.19307 1.29321 1.33611 0.85888 0.79152 0.81663 0.78140 1.19312 1.20720 1.20818 1.19459 0.87790 0.83899 0.83466 1.90521 1.13729 1.86901 1.55260 1.20905 0.97067 0.91718 1.05195 1.20599 0.92099 0.92127 0.87234 1.67590 1.11952 1.10256 1.28802 1.22883 0.91403 0.90710 0.98567 1.22016 1.02955 1.02994 0.93170 1.21288 0.93191 0.93193 0.99065 1.21175 1.03658 1.01016 0.96080 1.20173 0.76846 0.80687 0.96130 1.93189 1.91484 1.33844 1.97143 1.92961 1.32133 1.95808 1.97196 0.92942 0.90637 0.95684 0.92429 0.88210 0.87781 0.82494 0.84447 0.84389 0.86891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.59 8.44 59.85 0.51 3.10 16 2 N -0.45 -12.07 3.01 -122.20 -0.37 -12.44 16 3 C -0.30 -8.73 9.24 -14.93 -0.14 -8.87 16 4 H 0.10 2.95 7.45 -52.49 -0.39 2.55 16 5 C 0.03 0.79 5.04 -17.47 -0.09 0.71 16 6 N -0.88 -24.36 10.83 55.50 0.60 -23.75 16 7 Si 0.92 21.47 29.57 -169.99 -5.03 16.44 16 8 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 C 0.47 12.08 6.34 -10.99 -0.07 12.01 16 12 O -0.58 -16.87 15.46 5.54 0.09 -16.79 16 13 C -0.11 -2.23 3.91 -29.04 -0.11 -2.34 16 14 C 0.22 4.15 5.25 -82.59 -0.43 3.72 16 15 N -0.48 -8.71 10.27 -9.48 -0.10 -8.81 16 16 C 0.12 1.68 11.18 -17.54 -0.20 1.49 16 17 C -0.19 -2.21 10.11 -39.44 -0.40 -2.61 16 18 C -0.04 -0.51 9.81 -39.28 -0.39 -0.90 16 19 C -0.22 -3.52 5.38 -104.49 -0.56 -4.08 16 20 C 0.32 4.92 4.95 36.00 0.18 5.09 16 21 F -0.18 -3.67 15.08 2.25 0.03 -3.64 16 22 F -0.20 -3.19 15.37 2.25 0.03 -3.16 16 23 H 0.05 1.26 7.83 -51.93 -0.41 0.85 16 24 H 0.07 1.85 6.80 -51.93 -0.35 1.49 16 25 H 0.02 0.49 6.61 -51.93 -0.34 0.14 16 26 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.10 1.89 7.41 -51.93 -0.38 1.50 16 28 H 0.10 2.04 5.48 -51.93 -0.28 1.76 16 29 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.14 1.14 8.00 -52.48 -0.42 0.72 16 32 H 0.11 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 282.50 15.07 4.26 4.26 Total: -1.00 -35.13 282.50 -5.16 -40.28 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -2.97 Total: 0.28 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -1.70 Total: 7.32 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.14 Total: -45.00 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.09 Total: -16.79 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.07 Total: -6.79 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -35.13 -5.16 -40.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178436148.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.933 kcal (2) G-P(sol) polarization free energy of solvation -35.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds