Wall clock time and date at job start Mon Mar 30 2020 01:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37101 * 120.00123 * 2 1 4 4 H 1.07996 * 119.99912 * 204.39653 * 3 2 1 5 5 C 1.38946 * 119.99765 * 24.40325 * 3 2 1 6 6 N 1.31411 * 120.00103 * 12.64859 * 5 3 2 7 7 Si 1.86801 * 119.99915 * 192.65529 * 5 3 2 8 8 H 1.48504 * 109.47049 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.47535 * 119.99429 * 7 5 3 10 10 H 1.48497 * 109.46896 * 239.99662 * 7 5 3 11 11 C 1.34776 * 119.99713 * 180.02562 * 2 1 3 12 12 O 1.21298 * 119.99691 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00328 * 359.97438 * 11 2 1 14 14 C 1.50696 * 109.47215 * 180.02562 * 13 11 2 15 15 N 1.31884 * 119.61593 * 269.97853 * 14 13 11 16 16 C 1.31858 * 121.72540 * 179.97438 * 15 14 13 17 17 C 1.38226 * 120.76389 * 359.74354 * 16 15 14 18 18 C 1.38634 * 119.15702 * 0.52978 * 17 16 15 19 19 C 1.38180 * 119.61854 * 90.00178 * 14 13 11 20 20 C 1.50697 * 120.41895 * 0.02562 * 19 14 13 21 21 F 1.39892 * 109.47434 * 299.98082 * 20 19 14 22 22 F 1.39909 * 109.47096 * 59.98049 * 20 19 14 23 23 H 1.08999 * 109.47430 * 265.85964 * 1 2 3 24 24 H 1.09000 * 109.47004 * 25.86141 * 1 2 3 25 25 H 1.08998 * 109.47054 * 145.85942 * 1 2 3 26 26 H 0.97006 * 119.99758 * 180.02562 * 6 5 3 27 27 H 1.09003 * 109.47008 * 60.00317 * 13 11 2 28 28 H 1.09003 * 109.46838 * 300.00277 * 13 11 2 29 29 H 1.07995 * 119.61873 * 179.97438 * 16 15 14 30 30 H 1.08001 * 120.41926 * 180.26418 * 17 16 15 31 31 H 1.08003 * 120.78897 * 179.75493 * 18 17 16 32 32 H 1.09006 * 109.47595 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2290 -0.3863 5 6 1.5489 2.3369 0.4972 6 7 0.4348 2.2490 1.1886 7 14 2.3235 4.0073 0.1825 8 1 3.5644 3.8352 -0.6149 9 1 1.3683 4.8629 -0.5661 10 1 2.6542 4.6516 1.4790 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3646 -3.6177 -0.0005 15 7 2.7878 -4.1134 -1.1471 16 6 3.6444 -5.1147 -1.1956 17 6 4.1367 -5.6808 -0.0347 18 6 3.7102 -5.1901 1.1897 19 6 2.8083 -4.1368 1.2007 20 6 2.3188 -3.5652 2.5063 21 9 2.6642 -2.2117 2.5815 22 9 0.9278 -3.6963 2.5804 23 1 -0.3634 -0.0742 1.0250 24 1 -0.3633 0.9248 -0.4483 25 1 -0.3633 -0.8505 -0.5767 26 1 0.0146 3.0516 1.5353 27 1 0.7583 -2.5299 -0.8903 28 1 0.7590 -2.5302 0.8897 29 1 3.9679 -5.4943 -2.1535 30 1 4.8414 -6.4979 -0.0810 31 1 4.0748 -5.6154 2.1131 32 1 2.7791 -4.1042 3.3344 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178436148.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:30 Heat of formation + Delta-G solvation = -110.646125 kcal Electronic energy + Delta-G solvation = -21167.338394 eV Core-core repulsion = 17570.345644 eV Total energy + Delta-G solvation = -3596.992750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.01543 -47.95703 -41.41916 -40.05873 -36.66570 -34.18827 -34.10860 -33.48535 -30.03303 -28.10465 -27.18771 -26.18858 -24.00418 -23.10214 -20.79563 -18.91802 -18.80177 -18.28966 -18.18151 -17.94743 -17.16577 -16.82020 -16.59418 -16.05256 -15.81252 -15.04202 -14.98721 -14.70509 -14.34501 -14.19503 -14.15235 -13.81078 -13.72091 -13.33940 -13.16753 -13.03184 -12.86465 -12.66313 -12.29639 -12.12888 -12.05381 -11.01044 -10.96379 -10.50325 -10.43921 -9.97610 -9.66013 -8.33248 -5.98408 -0.07173 0.26724 1.35677 1.39290 1.54132 2.03374 2.27268 2.61902 2.75063 3.07002 3.11563 3.21858 3.34697 3.55139 3.78218 3.99658 4.03633 4.12819 4.25683 4.41306 4.41732 4.51764 4.58840 4.77127 4.98594 5.07386 5.10320 5.31987 5.44393 5.66662 6.10336 6.48821 6.97022 7.16936 7.45647 8.03337 8.70862 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027561 B = 0.006039 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.676322 B = 4635.430049 C = 4968.800750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.465 5.465 3 C -0.340 4.340 4 H 0.068 0.932 5 C -0.004 4.004 6 N -0.898 5.898 7 Si 0.991 3.009 8 H -0.275 1.275 9 H -0.263 1.263 10 H -0.275 1.275 11 C 0.461 3.539 12 O -0.620 6.620 13 C -0.094 4.094 14 C 0.174 3.826 15 N -0.517 5.517 16 C 0.105 3.895 17 C -0.171 4.171 18 C -0.036 4.036 19 C -0.234 4.234 20 C 0.304 3.696 21 F -0.214 7.214 22 F -0.207 7.207 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.273 0.727 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.188 0.812 30 H 0.187 0.813 31 H 0.187 0.813 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 -16.665 1.727 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.184 5.184 3 C -0.468 4.468 4 H 0.086 0.914 5 C -0.205 4.205 6 N -0.537 5.537 7 Si 0.815 3.185 8 H -0.200 1.200 9 H -0.187 1.187 10 H -0.200 1.200 11 C 0.250 3.750 12 O -0.507 6.507 13 C -0.135 4.135 14 C 0.037 3.963 15 N -0.226 5.226 16 C -0.052 4.052 17 C -0.190 4.190 18 C -0.061 4.061 19 C -0.237 4.237 20 C 0.251 3.749 21 F -0.196 7.196 22 F -0.188 7.188 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.205 0.795 30 H 0.205 0.795 31 H 0.205 0.795 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.073 -16.115 1.040 16.281 hybrid contribution 0.244 0.995 0.579 1.177 sum 2.317 -15.120 1.619 15.382 Atomic orbital electron populations 1.21428 0.79612 1.00736 1.00457 1.43753 1.06605 1.04548 1.63535 1.19585 1.00293 0.85986 1.40977 0.91437 1.26119 0.97119 1.02991 0.94316 1.70084 1.19791 1.30666 1.33114 0.84920 0.78295 0.77109 0.78225 1.19973 1.18743 1.20007 1.20298 0.87690 0.85279 0.81731 1.90459 1.15730 1.87810 1.56675 1.20696 0.97304 0.89869 1.05622 1.20430 0.93869 0.93012 0.88994 1.67462 1.13823 1.12244 1.29084 1.23557 0.90610 0.89826 1.01220 1.22587 1.01830 1.02795 0.91820 1.21898 0.91226 0.91445 1.01581 1.21405 1.04771 1.02371 0.95113 1.20917 0.76750 0.79084 0.98193 1.93107 1.91834 1.37239 1.97380 1.92933 1.32912 1.95643 1.97290 0.93964 0.92011 0.92024 0.91696 0.87399 0.87376 0.79485 0.79542 0.79542 0.81114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.81 8.44 127.77 1.08 6.89 16 2 N -0.47 -26.15 3.01 -658.90 -1.98 -28.13 16 3 C -0.34 -20.66 9.24 84.04 0.78 -19.88 16 4 H 0.07 4.38 7.45 -2.91 -0.02 4.36 16 5 C 0.00 -0.23 5.04 84.93 0.43 0.20 16 6 N -0.90 -50.05 10.83 21.66 0.23 -49.81 16 7 Si 0.99 44.53 29.57 68.60 2.03 46.56 16 8 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 9 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 C 0.46 24.84 6.34 87.66 0.56 25.40 16 12 O -0.62 -37.78 15.46 -3.09 -0.05 -37.83 16 13 C -0.09 -4.00 3.91 29.10 0.11 -3.89 16 14 C 0.17 6.67 5.25 42.54 0.22 6.89 16 15 N -0.52 -18.71 10.27 -183.89 -1.89 -20.60 16 16 C 0.10 2.65 11.18 84.69 0.95 3.60 16 17 C -0.17 -3.20 10.11 22.36 0.23 -2.97 16 18 C -0.04 -0.75 9.81 22.47 0.22 -0.53 16 19 C -0.23 -7.25 5.38 -19.78 -0.11 -7.35 16 20 C 0.30 9.09 4.95 71.23 0.35 9.44 16 21 F -0.21 -9.14 15.08 44.97 0.68 -8.46 16 22 F -0.21 -6.49 15.37 44.97 0.69 -5.80 16 23 H 0.04 2.08 7.83 -2.39 -0.02 2.06 16 24 H 0.06 3.09 6.80 -2.39 -0.02 3.07 16 25 H 0.06 2.44 6.61 -2.39 -0.02 2.43 16 26 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 27 H 0.11 4.21 7.41 -2.39 -0.02 4.19 16 28 H 0.11 4.37 5.48 -2.39 -0.01 4.36 16 29 H 0.19 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 31 H 0.19 1.94 8.00 -2.91 -0.02 1.91 16 32 H 0.17 3.00 7.93 -2.38 -0.02 2.98 16 Total: -1.00 -81.72 282.50 5.69 -76.03 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.16 Total: 10.24 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 4.82 Total: 17.80 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -3.64 Total: -98.54 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -0.05 Total: -37.83 kcal Atomic # 9 Polarization: -15.63 SS G_CDS: 1.37 Total: -14.26 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -81.72 5.69 -76.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178436148.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.616 kcal (2) G-P(sol) polarization free energy of solvation -81.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds