Wall clock time and date at job start Mon Mar 30 2020 01:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48497 * 109.46838 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46822 * 299.99820 * 3 2 1 6 6 H 1.48504 * 109.46890 * 60.00083 * 3 2 1 7 7 C 1.39017 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99548 * 169.43599 * 7 2 1 9 9 N 1.36869 * 119.99798 * 349.43614 * 7 2 1 10 10 C 1.46502 * 120.00282 * 310.99512 * 9 7 2 11 11 C 1.50704 * 109.47018 * 268.56991 * 10 9 7 12 12 C 1.38233 * 119.99686 * 85.28559 * 11 10 9 13 13 C 1.38239 * 119.99742 * 179.97438 * 12 11 10 14 14 C 1.38233 * 119.99802 * 0.09114 * 13 12 11 15 15 C 1.38231 * 120.00330 * 359.86054 * 14 13 12 16 16 C 1.38231 * 119.99855 * 0.09626 * 15 14 13 17 17 C 1.34777 * 119.99991 * 131.00054 * 9 7 2 18 18 O 1.21736 * 120.00466 * 183.41910 * 17 9 7 19 19 C 1.46552 * 119.99847 * 3.40979 * 17 9 7 20 20 C 1.37992 * 126.24226 * 171.56511 * 19 17 9 21 21 C 1.39803 * 107.08798 * 179.88740 * 20 19 17 22 22 C 1.35489 * 107.87730 * 0.38267 * 21 20 19 23 23 N 1.35586 * 108.88193 * 359.76165 * 22 21 20 24 24 H 0.96996 * 125.68990 * 180.02562 * 23 22 21 25 25 H 0.96997 * 119.99538 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46958 * 148.57423 * 10 9 7 27 27 H 1.08997 * 109.47057 * 28.57321 * 10 9 7 28 28 H 1.08001 * 120.00179 * 359.69642 * 12 11 10 29 29 H 1.07997 * 119.99562 * 179.97438 * 13 12 11 30 30 H 1.08007 * 119.99679 * 179.97438 * 14 13 12 31 31 H 1.08005 * 120.00133 * 180.02562 * 15 14 13 32 32 H 1.08009 * 120.00010 * 179.97438 * 16 15 14 33 33 H 1.08007 * 126.45582 * 0.02562 * 20 19 17 34 34 H 1.07997 * 126.06608 * 180.12533 * 21 20 19 35 35 H 1.07994 * 125.55706 * 179.74331 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3463 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3964 1.2126 7 6 2.0091 -1.2039 -0.0005 8 1 3.0753 -1.2117 -0.1720 9 7 1.3420 -2.3793 0.2162 10 6 0.4224 -2.5013 1.3501 11 6 1.1685 -3.0322 2.5471 12 6 1.8547 -2.1635 3.3749 13 6 2.5386 -2.6504 4.4731 14 6 2.5379 -4.0062 4.7424 15 6 1.8509 -4.8749 3.9152 16 6 1.1662 -4.3879 2.8175 17 6 1.5313 -3.4245 -0.6134 18 8 0.8920 -4.4487 -0.4578 19 6 2.5066 -3.3279 -1.7029 20 6 2.9214 -4.3593 -2.5204 21 6 3.8512 -3.8244 -3.4170 22 6 3.9923 -2.5071 -3.1333 23 7 3.1807 -2.1927 -2.0937 24 1 3.0897 -1.3144 -1.6923 25 1 -0.4849 0.8401 -0.0004 26 1 -0.3843 -3.1871 1.0914 27 1 0.0054 -1.5225 1.5867 28 1 1.8602 -1.1048 3.1611 29 1 3.0750 -1.9717 5.1196 30 1 3.0726 -4.3867 5.6002 31 1 1.8500 -5.9342 4.1258 32 1 0.6298 -5.0666 2.1709 33 1 2.5886 -5.3859 -2.4773 34 1 4.3687 -4.3661 -4.1949 35 1 4.6451 -1.8197 -3.6506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188574564.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:26 Heat of formation + Delta-G solvation = 31.537969 kcal Electronic energy + Delta-G solvation = -20418.084737 eV Core-core repulsion = 17381.487082 eV Total energy + Delta-G solvation = -3036.597655 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.98738 -40.42688 -39.28390 -36.87667 -33.88872 -32.68424 -31.72285 -31.55671 -29.90237 -27.67652 -26.55641 -23.37751 -23.19488 -22.03192 -21.23728 -20.81678 -20.18108 -17.95350 -17.31685 -17.03013 -16.73887 -16.19952 -15.97356 -15.67266 -15.56650 -14.66160 -14.48724 -14.34932 -14.22860 -13.73791 -13.61990 -13.40586 -13.21635 -13.09164 -12.95895 -12.88601 -12.56890 -12.09802 -11.93233 -11.78141 -11.18712 -10.68991 -9.77109 -9.73358 -9.61691 -9.50938 -8.92265 -8.41656 -6.37868 0.47319 0.55312 0.83901 1.38743 1.42253 1.53616 2.04663 2.17871 2.57939 2.66347 2.76264 3.09326 3.22947 4.01800 4.09560 4.21415 4.34355 4.36137 4.46656 4.55503 4.62819 4.71073 4.78295 4.85514 5.07348 5.17320 5.22105 5.23761 5.32333 5.45363 5.62542 5.62962 5.85543 5.97548 6.05570 6.18169 6.19379 6.29411 6.87195 6.95057 7.46053 7.90128 8.60343 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.013342 B = 0.008953 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.110822 B = 3126.846410 C = 4422.140460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.017 3.983 3 Si 0.975 3.025 4 H -0.248 1.248 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.438 5.438 10 C 0.162 3.838 11 C -0.106 4.106 12 C -0.112 4.112 13 C -0.125 4.125 14 C -0.122 4.122 15 C -0.128 4.128 16 C -0.125 4.125 17 C 0.532 3.468 18 O -0.624 6.624 19 C -0.049 4.049 20 C -0.160 4.160 21 C -0.221 4.221 22 C 0.001 3.999 23 N -0.522 5.522 24 H 0.429 0.571 25 H 0.278 0.722 26 H 0.039 0.961 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.148 0.852 30 H 0.155 0.845 31 H 0.142 0.858 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.165 0.835 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.365 0.448 3.286 8.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.189 4.189 3 Si 0.796 3.204 4 H -0.171 1.171 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.497 4.497 8 H 0.110 0.890 9 N -0.155 5.155 10 C 0.039 3.961 11 C -0.107 4.107 12 C -0.130 4.130 13 C -0.143 4.143 14 C -0.140 4.140 15 C -0.146 4.146 16 C -0.144 4.144 17 C 0.323 3.677 18 O -0.512 6.512 19 C -0.164 4.164 20 C -0.187 4.187 21 C -0.244 4.244 22 C -0.136 4.136 23 N -0.125 5.125 24 H 0.279 0.721 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.107 0.893 28 H 0.131 0.869 29 H 0.166 0.834 30 H 0.173 0.827 31 H 0.160 0.840 32 H 0.120 0.880 33 H 0.147 0.853 34 H 0.182 0.818 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 7.796 0.308 3.502 8.552 hybrid contribution -0.441 1.007 -0.033 1.100 sum 7.355 1.315 3.469 8.237 Atomic orbital electron populations 1.69974 1.07954 1.29294 1.44341 1.26445 0.95920 1.02838 0.93719 0.85156 0.79526 0.77155 0.78538 1.17073 1.19884 1.19834 1.19529 0.92358 0.83666 1.54112 0.88950 1.43283 1.39749 1.11045 1.21449 1.20109 0.90978 1.00786 0.84267 1.20447 0.99517 0.94344 0.96365 1.21130 0.97338 0.99448 0.95113 1.21437 0.99219 0.96555 0.97075 1.21465 0.99246 0.93082 1.00190 1.21387 0.97634 1.00938 0.94623 1.21204 1.00435 0.94705 0.98009 1.18006 0.83336 0.84497 0.81839 1.90593 1.52012 1.32869 1.75724 1.20429 1.03843 0.88989 1.03136 1.21366 1.01550 0.97779 0.97983 1.21056 1.04528 0.94701 1.04155 1.22804 0.99226 0.98233 0.93343 1.43659 1.31061 1.11400 1.26373 0.72120 0.91241 0.94261 0.89316 0.86861 0.83417 0.82714 0.84028 0.87999 0.85255 0.81762 0.77698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.75 11.69 21.68 0.25 -44.49 16 2 C 0.02 0.80 5.12 84.94 0.43 1.24 16 3 Si 0.97 35.23 29.57 68.60 2.03 37.26 16 4 H -0.25 -8.23 7.11 99.48 0.71 -7.53 16 5 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 6 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 7 C -0.37 -17.67 6.78 84.09 0.57 -17.10 16 8 H 0.09 4.21 5.81 -2.91 -0.02 4.20 16 9 N -0.44 -22.62 2.41 -644.25 -1.56 -24.18 16 10 C 0.16 8.09 5.10 85.63 0.44 8.53 16 11 C -0.11 -4.62 5.46 -19.87 -0.11 -4.72 16 12 C -0.11 -4.28 9.72 22.27 0.22 -4.06 16 13 C -0.13 -3.80 10.05 22.27 0.22 -3.57 16 14 C -0.12 -3.40 10.05 22.27 0.22 -3.18 16 15 C -0.13 -4.11 10.05 22.27 0.22 -3.89 16 16 C -0.12 -5.10 9.68 22.27 0.22 -4.88 16 17 C 0.53 28.56 7.59 86.41 0.66 29.22 16 18 O -0.62 -36.20 16.45 -4.46 -0.07 -36.27 16 19 C -0.05 -2.29 6.76 40.34 0.27 -2.01 16 20 C -0.16 -6.66 10.67 22.59 0.24 -6.42 16 21 C -0.22 -7.21 10.81 22.01 0.24 -6.97 16 22 C 0.00 0.04 11.89 83.48 0.99 1.03 16 23 N -0.52 -20.63 5.31 -183.57 -0.97 -21.60 16 24 H 0.43 16.84 5.13 -92.71 -0.48 16.37 16 25 H 0.28 13.17 8.31 -92.71 -0.77 12.39 16 26 H 0.04 2.10 7.33 -2.39 -0.02 2.08 16 27 H 0.09 4.60 6.00 -2.39 -0.01 4.59 16 28 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 29 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 30 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 31 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 32 H 0.10 4.50 8.03 -2.91 -0.02 4.47 16 33 H 0.13 5.34 8.06 -2.91 -0.02 5.32 16 34 H 0.16 4.11 8.06 -2.91 -0.02 4.08 16 35 H 0.21 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -64.87 303.47 5.15 -59.72 By element: Atomic # 1 Polarization: 45.72 SS G_CDS: 0.64 Total: 46.36 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 4.84 Total: -16.79 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -2.28 Total: -90.27 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.07 Total: -36.27 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 2.03 Total: 37.26 kcal Total: -64.87 5.15 -59.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188574564.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.257 kcal (2) G-P(sol) polarization free energy of solvation -64.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds