Wall clock time and date at job start Mon Mar 30 2020 01:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30913 * 1 3 3 Si 1.86798 * 119.99972 * 2 1 4 4 H 1.48498 * 109.47019 * 274.97992 * 3 2 1 5 5 H 1.48499 * 109.47244 * 34.98193 * 3 2 1 6 6 H 1.48508 * 109.47195 * 154.98333 * 3 2 1 7 7 C 1.39850 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00452 * 160.32935 * 7 2 1 9 9 C 1.41109 * 119.99702 * 340.33216 * 7 2 1 10 10 C 1.40910 * 120.15115 * 151.87230 * 9 7 2 11 11 C 1.36303 * 119.83424 * 180.02562 * 10 9 7 12 12 C 1.39603 * 120.16635 * 0.02562 * 11 10 9 13 13 N 1.38800 * 119.85007 * 179.97438 * 12 11 10 14 14 C 1.39627 * 120.00100 * 212.31437 * 13 12 11 15 15 C 1.38994 * 120.49302 * 208.04695 * 14 13 12 16 16 N 1.31775 * 120.64151 * 179.72256 * 15 14 13 17 17 C 1.31896 * 121.81180 * 0.25032 * 16 15 14 18 18 C 1.38256 * 120.93544 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.37088 * 180.02562 * 18 17 16 20 20 O 1.42900 * 109.47360 * 89.99948 * 19 18 17 21 21 C 1.38516 * 119.24930 * 359.97438 * 18 17 16 22 22 C 1.39612 * 120.30786 * 0.22728 * 12 11 10 23 23 C 1.36319 * 120.15487 * 359.48901 * 22 12 11 24 24 H 0.97003 * 119.99766 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.07474 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.91632 * 179.97438 * 11 10 9 27 27 H 0.97001 * 120.00232 * 32.30469 * 13 12 11 28 28 H 1.08001 * 119.68325 * 359.97438 * 15 14 13 29 29 H 1.07996 * 119.53252 * 180.02562 * 17 16 15 30 30 H 1.09004 * 109.47073 * 210.00068 * 19 18 17 31 31 H 1.09007 * 109.47550 * 329.99807 * 19 18 17 32 32 H 0.96696 * 114.00133 * 179.97438 * 20 19 18 33 33 H 1.08001 * 120.82287 * 179.97438 * 21 18 17 34 34 H 1.07992 * 119.92308 * 179.71980 * 22 12 11 35 35 H 1.07998 * 120.07707 * 180.25672 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3853 2.1071 -1.3948 5 1 1.4972 2.6200 0.8027 6 1 3.5894 1.4121 0.5921 7 6 2.0084 -1.2111 -0.0005 8 1 3.0411 -1.2384 -0.3154 9 6 1.3645 -2.3977 0.4102 10 6 1.7776 -3.6421 -0.1057 11 6 1.1508 -4.7842 0.2951 12 6 0.1016 -4.7231 1.2141 13 7 -0.5324 -5.8901 1.6173 14 6 -1.8908 -5.8711 1.9396 15 6 -2.4121 -6.7808 2.8521 16 7 -3.6926 -6.7619 3.1624 17 6 -4.5259 -5.8930 2.6236 18 6 -4.0836 -4.9605 1.7038 19 6 -5.0466 -3.9732 1.0965 20 8 -5.0948 -2.7958 1.9049 21 6 -2.7451 -4.9433 1.3475 22 6 -0.3163 -3.4931 1.7254 23 6 0.3053 -2.3434 1.3378 24 1 -0.4850 0.8401 0.0004 25 1 2.5882 -3.6907 -0.8177 26 1 1.4660 -5.7387 -0.0998 27 1 -0.0318 -6.7190 1.6752 28 1 -1.7605 -7.5076 3.3144 29 1 -5.5684 -5.9102 2.9050 30 1 -4.7133 -3.7111 0.0923 31 1 -6.0399 -4.4192 1.0447 32 1 -5.6960 -2.1151 1.5729 33 1 -2.3723 -4.2261 0.6312 34 1 -1.1315 -3.4526 2.4325 35 1 -0.0164 -1.3930 1.7373 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211105540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:14 Heat of formation + Delta-G solvation = 6.998785 kcal Electronic energy + Delta-G solvation = -19538.565318 eV Core-core repulsion = 16500.903564 eV Total energy + Delta-G solvation = -3037.661754 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.12852 -38.06194 -36.69231 -35.38782 -33.28731 -32.28741 -30.20648 -29.67076 -28.25903 -26.18135 -24.91297 -22.77820 -21.93137 -20.98183 -20.17519 -17.42783 -17.37700 -17.03381 -16.72810 -16.13309 -15.55637 -15.10150 -14.18707 -14.07052 -13.90143 -13.59481 -13.24266 -12.76377 -12.68619 -12.28084 -12.14560 -11.98752 -11.79500 -11.44799 -11.17957 -11.02127 -10.68580 -10.40674 -10.02508 -9.88769 -9.59148 -9.32770 -9.21345 -9.00178 -8.03030 -7.68709 -6.88600 -6.62928 -4.31225 1.37169 1.67914 2.71917 2.93516 3.04821 3.07883 3.15076 3.88379 3.91879 4.06434 4.53396 4.59040 4.87200 5.11624 5.13050 5.26885 5.36555 5.52976 5.57811 5.79999 5.89890 6.07466 6.17313 6.44977 6.58183 6.68383 6.80478 6.95383 7.01178 7.13853 7.35243 7.47905 7.63804 7.68357 7.94442 8.03510 8.20478 8.32643 8.34276 8.54065 8.80931 8.89088 10.12921 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.005191 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.137620 B = 5392.558402 C = 6483.263010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.463 4.463 8 H 0.079 0.921 9 C 0.103 3.897 10 C -0.206 4.206 11 C -0.113 4.113 12 C 0.017 3.983 13 N -0.666 5.666 14 C 0.162 3.838 15 C 0.029 3.971 16 N -0.457 5.457 17 C 0.051 3.949 18 C -0.108 4.108 19 C 0.123 3.877 20 O -0.563 6.563 21 C -0.110 4.110 22 C -0.118 4.118 23 C -0.141 4.141 24 H 0.281 0.719 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.398 0.602 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.379 0.621 33 H 0.141 0.859 34 H 0.092 0.908 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.881 -5.597 0.874 8.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.493 4.493 8 H 0.097 0.903 9 C 0.100 3.900 10 C -0.226 4.226 11 C -0.134 4.134 12 C -0.077 4.077 13 N -0.287 5.287 14 C 0.057 3.943 15 C -0.133 4.133 16 N -0.165 5.165 17 C -0.109 4.109 18 C -0.110 4.110 19 C 0.045 3.955 20 O -0.369 6.369 21 C -0.140 4.140 22 C -0.139 4.139 23 C -0.161 4.161 24 H 0.092 0.908 25 H 0.114 0.886 26 H 0.109 0.891 27 H 0.233 0.767 28 H 0.166 0.834 29 H 0.164 0.836 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.226 0.774 33 H 0.159 0.841 34 H 0.110 0.890 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.920 -6.241 1.777 9.486 hybrid contribution 0.459 1.427 -1.039 1.824 sum -6.461 -4.813 0.737 8.090 Atomic orbital electron populations 1.69860 1.07581 1.29408 1.34715 1.25884 0.94685 1.01272 0.92233 0.86361 0.80884 0.80833 0.79052 1.19588 1.19994 1.18385 1.19479 0.98888 0.91535 1.39370 0.90332 1.17617 0.90969 0.92130 0.89286 1.20604 1.04654 0.92578 1.04773 1.20071 0.98454 0.97336 0.97508 1.17157 1.00764 0.85197 1.04535 1.41522 1.05115 1.10101 1.71968 1.18870 0.85388 0.96227 0.93858 1.22340 0.92419 1.01411 0.97163 1.67454 1.03417 1.22254 1.23339 1.22210 0.99300 0.93279 0.96104 1.20388 0.94331 0.97216 0.99086 1.20852 0.96558 0.84937 0.93164 1.86602 1.69022 1.28054 1.53194 1.21396 0.91595 1.00642 1.00352 1.20335 1.00800 0.92123 1.00597 1.20820 0.99483 0.96377 0.99387 0.90788 0.88560 0.89116 0.76713 0.83393 0.83636 0.92553 0.92761 0.77443 0.84148 0.89018 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.04 11.32 55.54 0.63 -19.41 16 2 C 0.08 1.90 5.06 -17.34 -0.09 1.81 16 3 Si 0.90 18.25 29.60 -169.99 -5.03 13.22 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.94 9.00 -37.89 -0.34 -12.28 16 8 H 0.08 1.94 7.92 -52.49 -0.42 1.53 16 9 C 0.10 2.64 5.52 -106.79 -0.59 2.05 16 10 C -0.21 -4.82 9.74 -39.27 -0.38 -5.20 16 11 C -0.11 -2.39 9.89 -39.77 -0.39 -2.79 16 12 C 0.02 0.36 5.92 -83.68 -0.50 -0.13 16 13 N -0.67 -11.61 5.42 -8.21 -0.04 -11.65 16 14 C 0.16 2.81 5.96 -83.62 -0.50 2.31 16 15 C 0.03 0.46 11.11 -17.30 -0.19 0.27 16 16 N -0.46 -7.52 10.35 -13.06 -0.14 -7.65 16 17 C 0.05 0.78 10.85 -17.52 -0.19 0.59 16 18 C -0.11 -1.71 5.52 -104.51 -0.58 -2.29 16 19 C 0.12 1.60 7.19 36.00 0.26 1.86 16 20 O -0.56 -7.94 13.64 -35.23 -0.48 -8.42 16 21 C -0.11 -1.98 7.73 -39.07 -0.30 -2.28 16 22 C -0.12 -2.72 7.83 -39.76 -0.31 -3.04 16 23 C -0.14 -3.57 8.62 -39.27 -0.34 -3.91 16 24 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 25 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 26 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 27 H 0.40 5.78 8.90 -40.82 -0.36 5.42 16 28 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 29 H 0.15 1.84 8.06 -52.49 -0.42 1.41 16 30 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 31 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 32 H 0.38 3.33 9.12 45.56 0.42 3.74 16 33 H 0.14 2.81 6.67 -52.49 -0.35 2.46 16 34 H 0.09 2.10 6.68 -52.49 -0.35 1.75 16 35 H 0.11 3.00 6.50 -52.49 -0.34 2.66 16 LS Contribution 304.11 15.07 4.58 4.58 Total: -1.00 -29.18 304.11 -7.99 -37.17 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -3.07 Total: 15.17 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -4.44 Total: -23.01 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.45 Total: -38.71 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.48 Total: -8.42 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.18 -7.99 -37.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211105540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.172 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds