Wall clock time and date at job start Mon Mar 30 2020 01:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30913 * 1 3 3 Si 1.86798 * 119.99972 * 2 1 4 4 H 1.48498 * 109.47019 * 274.97992 * 3 2 1 5 5 H 1.48499 * 109.47244 * 34.98193 * 3 2 1 6 6 H 1.48508 * 109.47195 * 154.98333 * 3 2 1 7 7 C 1.39850 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00452 * 160.32935 * 7 2 1 9 9 C 1.41109 * 119.99702 * 340.33216 * 7 2 1 10 10 C 1.40910 * 120.15115 * 151.87230 * 9 7 2 11 11 C 1.36303 * 119.83424 * 180.02562 * 10 9 7 12 12 C 1.39603 * 120.16635 * 0.02562 * 11 10 9 13 13 N 1.38800 * 119.85007 * 179.97438 * 12 11 10 14 14 C 1.39627 * 120.00100 * 212.31437 * 13 12 11 15 15 C 1.38994 * 120.49302 * 208.04695 * 14 13 12 16 16 N 1.31775 * 120.64151 * 179.72256 * 15 14 13 17 17 C 1.31896 * 121.81180 * 0.25032 * 16 15 14 18 18 C 1.38256 * 120.93544 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.37088 * 180.02562 * 18 17 16 20 20 O 1.42900 * 109.47360 * 89.99948 * 19 18 17 21 21 C 1.38516 * 119.24930 * 359.97438 * 18 17 16 22 22 C 1.39612 * 120.30786 * 0.22728 * 12 11 10 23 23 C 1.36319 * 120.15487 * 359.48901 * 22 12 11 24 24 H 0.97003 * 119.99766 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.07474 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.91632 * 179.97438 * 11 10 9 27 27 H 0.97001 * 120.00232 * 32.30469 * 13 12 11 28 28 H 1.08001 * 119.68325 * 359.97438 * 15 14 13 29 29 H 1.07996 * 119.53252 * 180.02562 * 17 16 15 30 30 H 1.09004 * 109.47073 * 210.00068 * 19 18 17 31 31 H 1.09007 * 109.47550 * 329.99807 * 19 18 17 32 32 H 0.96696 * 114.00133 * 179.97438 * 20 19 18 33 33 H 1.08001 * 120.82287 * 179.97438 * 21 18 17 34 34 H 1.07992 * 119.92308 * 179.71980 * 22 12 11 35 35 H 1.07998 * 120.07707 * 180.25672 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3853 2.1071 -1.3948 5 1 1.4972 2.6200 0.8027 6 1 3.5894 1.4121 0.5921 7 6 2.0084 -1.2111 -0.0005 8 1 3.0411 -1.2384 -0.3154 9 6 1.3645 -2.3977 0.4102 10 6 1.7776 -3.6421 -0.1057 11 6 1.1508 -4.7842 0.2951 12 6 0.1016 -4.7231 1.2141 13 7 -0.5324 -5.8901 1.6173 14 6 -1.8908 -5.8711 1.9396 15 6 -2.4121 -6.7808 2.8521 16 7 -3.6926 -6.7619 3.1624 17 6 -4.5259 -5.8930 2.6236 18 6 -4.0836 -4.9605 1.7038 19 6 -5.0466 -3.9732 1.0965 20 8 -5.0948 -2.7958 1.9049 21 6 -2.7451 -4.9433 1.3475 22 6 -0.3163 -3.4931 1.7254 23 6 0.3053 -2.3434 1.3378 24 1 -0.4850 0.8401 0.0004 25 1 2.5882 -3.6907 -0.8177 26 1 1.4660 -5.7387 -0.0998 27 1 -0.0318 -6.7190 1.6752 28 1 -1.7605 -7.5076 3.3144 29 1 -5.5684 -5.9102 2.9050 30 1 -4.7133 -3.7111 0.0923 31 1 -6.0399 -4.4192 1.0447 32 1 -5.6960 -2.1151 1.5729 33 1 -2.3723 -4.2261 0.6312 34 1 -1.1315 -3.4526 2.4325 35 1 -0.0164 -1.3930 1.7373 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211105540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:14 Heat of formation + Delta-G solvation = -12.518704 kcal Electronic energy + Delta-G solvation = -19539.411660 eV Core-core repulsion = 16500.903564 eV Total energy + Delta-G solvation = -3038.508096 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.46070 -39.73101 -37.81060 -36.94927 -35.03332 -33.52567 -31.78860 -31.48937 -29.86189 -27.35759 -26.61406 -24.19959 -23.45943 -22.62367 -21.79776 -19.26789 -18.50798 -18.39875 -18.06061 -17.51401 -17.11790 -16.68955 -15.77838 -15.48394 -15.12145 -14.84446 -14.82627 -14.45940 -14.13612 -13.93242 -13.75786 -13.46209 -13.38296 -12.81749 -12.75063 -12.62162 -12.33140 -12.04347 -11.65222 -11.36281 -11.04251 -10.98998 -10.60205 -10.33241 -9.63607 -9.51249 -8.68409 -8.25972 -6.20059 0.10938 0.30686 1.00336 1.08590 1.38835 1.48786 1.54602 2.21468 2.50322 2.70692 2.85628 3.48104 3.69864 3.74183 3.94977 4.00758 4.08644 4.16289 4.32636 4.38327 4.46903 4.65054 4.68062 4.94704 5.04846 5.14167 5.14727 5.30692 5.32996 5.46377 5.65213 5.75069 5.86376 6.07051 6.24322 6.48843 6.68309 6.89297 6.90696 6.93882 7.03823 7.08007 8.34552 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.005191 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.137620 B = 5392.558402 C = 6483.263010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.037 3.963 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.501 4.501 8 H 0.078 0.922 9 C 0.070 3.930 10 C -0.213 4.213 11 C -0.114 4.114 12 C 0.043 3.957 13 N -0.662 5.662 14 C 0.146 3.854 15 C 0.039 3.961 16 N -0.469 5.469 17 C 0.056 3.944 18 C -0.114 4.114 19 C 0.122 3.878 20 O -0.589 6.589 21 C -0.129 4.129 22 C -0.124 4.124 23 C -0.160 4.160 24 H 0.287 0.713 25 H 0.106 0.894 26 H 0.127 0.873 27 H 0.415 0.585 28 H 0.177 0.823 29 H 0.177 0.823 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.400 0.600 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 -6.981 1.236 10.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.178 4.178 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.531 4.531 8 H 0.096 0.904 9 C 0.067 3.933 10 C -0.233 4.233 11 C -0.135 4.135 12 C -0.052 4.052 13 N -0.286 5.286 14 C 0.042 3.958 15 C -0.123 4.123 16 N -0.176 5.176 17 C -0.102 4.102 18 C -0.117 4.117 19 C 0.044 3.956 20 O -0.399 6.399 21 C -0.159 4.159 22 C -0.145 4.145 23 C -0.180 4.180 24 H 0.097 0.903 25 H 0.124 0.876 26 H 0.145 0.855 27 H 0.253 0.747 28 H 0.194 0.806 29 H 0.194 0.806 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.250 0.750 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.767 -7.659 2.142 11.117 hybrid contribution 0.525 1.656 -1.095 2.053 sum -7.243 -6.004 1.047 9.465 Atomic orbital electron populations 1.69920 1.09014 1.30492 1.35958 1.26693 0.95373 1.04391 0.91313 0.85279 0.79308 0.76323 0.79351 1.18655 1.19372 1.18218 1.19709 0.99162 0.92765 1.41477 0.90422 1.17913 0.91811 0.93372 0.90194 1.20837 1.04997 0.92611 1.04823 1.20375 0.97924 0.98217 0.96967 1.17178 0.99721 0.85707 1.02629 1.41326 1.05409 1.09540 1.72303 1.18989 0.85120 0.96993 0.94692 1.22744 0.92655 1.00906 0.95963 1.67568 1.03666 1.22715 1.23682 1.22745 1.00602 0.92079 0.94804 1.20733 0.93975 0.97971 0.98998 1.20956 0.97744 0.84437 0.92446 1.86529 1.70235 1.29127 1.53991 1.21372 0.93116 1.00717 1.00716 1.20305 1.00723 0.92618 1.00822 1.20688 1.00626 0.96223 1.00485 0.90291 0.87552 0.85472 0.74693 0.80597 0.80562 0.92792 0.88946 0.74968 0.86992 0.89452 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.76 11.32 21.81 0.25 -43.51 16 2 C 0.04 1.87 5.06 85.22 0.43 2.30 16 3 Si 0.98 38.29 29.60 68.60 2.03 40.32 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.50 -26.86 9.00 23.36 0.21 -26.65 16 8 H 0.08 3.99 7.92 -2.91 -0.02 3.97 16 9 C 0.07 3.72 5.52 -21.27 -0.12 3.60 16 10 C -0.21 -10.03 9.74 22.47 0.22 -9.81 16 11 C -0.11 -4.70 9.89 22.15 0.22 -4.48 16 12 C 0.04 1.78 5.92 38.70 0.23 2.01 16 13 N -0.66 -21.92 5.42 -179.89 -0.97 -22.89 16 14 C 0.15 4.84 5.96 38.34 0.23 5.07 16 15 C 0.04 1.14 11.11 84.88 0.94 2.09 16 16 N -0.47 -14.08 10.35 -195.22 -2.02 -16.10 16 17 C 0.06 1.58 10.85 84.69 0.92 2.50 16 18 C -0.11 -3.46 5.52 -19.79 -0.11 -3.57 16 19 C 0.12 2.97 7.19 71.23 0.51 3.49 16 20 O -0.59 -15.95 13.64 -148.98 -2.03 -17.99 16 21 C -0.13 -4.61 7.73 22.60 0.17 -4.44 16 22 C -0.12 -5.87 7.83 22.15 0.17 -5.70 16 23 C -0.16 -8.51 8.62 22.47 0.19 -8.31 16 24 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 25 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 26 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 27 H 0.42 10.90 8.90 -92.71 -0.83 10.07 16 28 H 0.18 4.04 8.06 -2.91 -0.02 4.01 16 29 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 30 H 0.05 1.32 8.09 -2.38 -0.02 1.30 16 31 H 0.09 1.54 8.09 -2.38 -0.02 1.52 16 32 H 0.40 6.53 9.12 -74.06 -0.68 5.85 16 33 H 0.11 4.63 6.67 -2.91 -0.02 4.61 16 34 H 0.09 4.14 6.68 -2.91 -0.02 4.12 16 35 H 0.09 5.11 6.50 -2.91 -0.02 5.09 16 Total: -1.00 -64.81 304.11 1.11 -63.69 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -0.36 Total: 38.38 kcal Atomic # 6 Polarization: -46.13 SS G_CDS: 4.23 Total: -41.91 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -2.75 Total: -82.50 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -2.03 Total: -17.99 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -64.81 1.11 -63.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211105540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.173 kcal (2) G-P(sol) polarization free energy of solvation -64.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds