Wall clock time and date at job start Mon Mar 30 2020 01:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30894 * 1 3 3 Si 1.86803 * 119.99612 * 2 1 4 4 H 1.48502 * 109.46900 * 269.99974 * 3 2 1 5 5 H 1.48497 * 109.47050 * 30.00010 * 3 2 1 6 6 H 1.48500 * 109.46715 * 150.00222 * 3 2 1 7 7 C 1.39905 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99850 * 198.82515 * 7 2 1 9 9 C 1.41015 * 120.00107 * 18.82894 * 7 2 1 10 10 C 1.40743 * 120.31237 * 24.84214 * 9 7 2 11 11 C 1.36423 * 119.95416 * 180.27723 * 10 9 7 12 12 C 1.38929 * 120.60358 * 359.71878 * 11 10 9 13 13 C 1.38120 * 120.63861 * 359.97438 * 12 11 10 14 14 C 1.38809 * 120.01771 * 0.02562 * 13 12 11 15 15 N 1.38681 * 120.29472 * 180.02562 * 14 13 12 16 16 C 1.39618 * 120.00185 * 257.34911 * 15 14 13 17 17 C 1.38994 * 120.49638 * 7.20901 * 16 15 14 18 18 N 1.31767 * 120.64737 * 179.97438 * 17 16 15 19 19 C 1.31896 * 121.80960 * 359.94328 * 18 17 16 20 20 C 1.38255 * 120.93756 * 0.05413 * 19 18 17 21 21 C 1.50698 * 120.37243 * 180.25206 * 20 19 18 22 22 O 1.42897 * 109.47044 * 269.72095 * 21 20 19 23 23 C 1.38518 * 119.24875 * 359.97110 * 20 19 18 24 24 H 0.96999 * 119.99882 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.02154 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.69902 * 179.74650 * 11 10 9 27 27 H 1.08008 * 119.68265 * 179.97438 * 12 11 10 28 28 H 1.07999 * 119.99207 * 180.02562 * 13 12 11 29 29 H 0.97001 * 120.00316 * 77.36119 * 15 14 13 30 30 H 1.08001 * 119.67610 * 359.96727 * 17 16 15 31 31 H 1.07998 * 119.53473 * 180.02562 * 19 18 17 32 32 H 1.08999 * 109.47243 * 29.72059 * 21 20 19 33 33 H 1.09005 * 109.47276 * 149.71969 * 21 20 19 34 34 H 0.96707 * 114.00172 * 180.02562 * 22 21 20 35 35 H 1.07998 * 120.82113 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5404 1.4402 0.7000 7 6 2.0085 -1.2116 -0.0005 8 1 3.0452 -1.2367 0.3013 9 6 1.3600 -2.4000 -0.3952 10 6 0.2467 -2.3500 -1.2548 11 6 -0.3786 -3.5038 -1.6275 12 6 0.0767 -4.7343 -1.1706 13 6 1.1708 -4.8126 -0.3313 14 6 1.8268 -3.6550 0.0644 15 7 2.9263 -3.7270 0.9065 16 6 2.7899 -3.4162 2.2608 17 6 1.5340 -3.1789 2.8070 18 7 1.4018 -2.8858 4.0849 19 6 2.4425 -2.8069 4.8913 20 6 3.7238 -3.0297 4.4222 21 6 4.9032 -2.9418 5.3561 22 8 5.4051 -1.6038 5.3649 23 6 3.9105 -3.3404 3.0853 24 1 -0.4850 0.8400 0.0004 25 1 -0.1148 -1.3984 -1.6159 26 1 -1.2350 -3.4603 -2.2839 27 1 -0.4298 -5.6385 -1.4747 28 1 1.5161 -5.7747 0.0172 29 1 3.7901 -3.9932 0.5546 30 1 0.6579 -3.2352 2.1779 31 1 2.2917 -2.5643 5.9329 32 1 4.5910 -3.2193 6.3628 33 1 5.6858 -3.6212 5.0181 34 1 6.1672 -1.4734 5.9458 35 1 4.9003 -3.5189 2.6917 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211106730.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:16 Heat of formation + Delta-G solvation = 8.017053 kcal Electronic energy + Delta-G solvation = -19976.313363 eV Core-core repulsion = 16938.695765 eV Total energy + Delta-G solvation = -3037.617598 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.75638 -37.95849 -36.64273 -34.77555 -33.75120 -32.07778 -30.02526 -29.64289 -27.50448 -25.96315 -25.12222 -22.75837 -21.64047 -21.05806 -19.82889 -17.40668 -17.37524 -16.80481 -16.47462 -15.84980 -15.29404 -14.93852 -14.21758 -14.05843 -13.84817 -13.68536 -13.04000 -12.77590 -12.55664 -12.44340 -12.04383 -11.66709 -11.38572 -11.22570 -11.13501 -10.89876 -10.55994 -10.45970 -10.07325 -9.74788 -9.52117 -9.25055 -8.88559 -8.81112 -7.56441 -7.54514 -6.94913 -6.65555 -4.45524 1.74649 2.11417 2.66746 2.84605 3.04952 3.09306 3.17940 3.88651 4.19266 4.40220 4.53918 4.77126 5.15370 5.17837 5.32901 5.44361 5.51794 5.53260 5.74434 6.10709 6.14398 6.18977 6.32340 6.53654 6.74170 6.80360 6.96353 7.05960 7.16827 7.27358 7.40020 7.64011 7.64325 7.82936 7.99435 8.13497 8.23239 8.38797 8.62871 8.75221 8.79574 8.95946 10.05497 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.007674 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.556110 B = 3647.798399 C = 4914.634100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.078 3.922 3 Si 0.905 3.095 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.441 4.441 8 H 0.078 0.922 9 C 0.117 3.883 10 C -0.156 4.156 11 C -0.100 4.100 12 C -0.242 4.242 13 C -0.081 4.081 14 C -0.016 4.016 15 N -0.655 5.655 16 C 0.193 3.807 17 C 0.067 3.933 18 N -0.453 5.453 19 C 0.034 3.966 20 C -0.110 4.110 21 C 0.127 3.873 22 O -0.565 6.565 23 C -0.155 4.155 24 H 0.283 0.717 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.390 0.610 30 H 0.157 0.843 31 H 0.140 0.860 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.374 0.626 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.390 -3.850 5.584 10.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.142 4.142 3 Si 0.729 3.271 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.469 4.469 8 H 0.096 0.904 9 C 0.112 3.888 10 C -0.176 4.176 11 C -0.118 4.118 12 C -0.262 4.262 13 C -0.100 4.100 14 C -0.110 4.110 15 N -0.275 5.275 16 C 0.086 3.914 17 C -0.097 4.097 18 N -0.160 5.160 19 C -0.124 4.124 20 C -0.112 4.112 21 C 0.049 3.951 22 O -0.370 6.370 23 C -0.186 4.186 24 H 0.094 0.906 25 H 0.136 0.864 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.225 0.775 30 H 0.174 0.826 31 H 0.158 0.842 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.221 0.779 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.686 -3.433 5.413 8.568 hybrid contribution 1.955 0.509 -0.119 2.024 sum 7.641 -2.924 5.294 9.745 Atomic orbital electron populations 1.69840 1.07564 1.29631 1.33212 1.25936 0.94717 1.01491 0.92014 0.86342 0.80857 0.80629 0.79293 1.19164 1.20087 1.18462 1.19431 0.98549 0.91046 1.37904 0.90359 1.17792 0.91056 0.91418 0.88507 1.20992 0.99086 0.97170 1.00372 1.20475 0.98555 0.93261 0.99524 1.20200 1.01673 0.96236 1.08119 1.20726 0.95424 0.95868 0.98019 1.17260 0.96875 0.93122 1.03735 1.41081 1.10306 1.72607 1.03499 1.18952 0.94304 0.92719 0.85465 1.22473 0.96093 1.00251 0.90877 1.67519 1.33842 1.10127 1.04541 1.22115 0.87715 1.03206 0.99353 1.20152 0.95115 1.01802 0.94150 1.20847 0.93368 0.83785 0.97120 1.86657 1.51439 1.28919 1.69971 1.20753 0.97392 1.07343 0.93089 0.90576 0.86423 0.89341 0.89289 0.89230 0.77497 0.82571 0.84250 0.92849 0.93157 0.77938 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.73 11.04 55.55 0.61 -19.11 16 2 C 0.08 1.95 5.11 -17.33 -0.09 1.86 16 3 Si 0.90 19.10 29.60 -169.99 -5.03 14.06 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.44 -11.28 8.34 -37.91 -0.32 -11.60 16 8 H 0.08 2.02 7.60 -52.48 -0.40 1.62 16 9 C 0.12 2.91 5.36 -106.63 -0.57 2.34 16 10 C -0.16 -3.87 8.64 -39.29 -0.34 -4.21 16 11 C -0.10 -2.23 9.96 -39.98 -0.40 -2.63 16 12 C -0.24 -5.17 10.03 -39.37 -0.40 -5.56 16 13 C -0.08 -1.72 9.96 -39.41 -0.39 -2.11 16 14 C -0.02 -0.37 4.50 -83.28 -0.37 -0.74 16 15 N -0.65 -13.08 4.67 -7.95 -0.04 -13.12 16 16 C 0.19 3.93 6.24 -83.63 -0.52 3.41 16 17 C 0.07 1.50 10.43 -17.30 -0.18 1.32 16 18 N -0.45 -9.72 10.35 -13.06 -0.14 -9.85 16 19 C 0.03 0.63 10.85 -17.52 -0.19 0.44 16 20 C -0.11 -1.85 5.52 -104.51 -0.58 -2.43 16 21 C 0.13 1.59 7.19 36.00 0.26 1.85 16 22 O -0.56 -7.55 13.64 -35.23 -0.48 -8.03 16 23 C -0.16 -2.76 9.73 -39.07 -0.38 -3.14 16 24 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 25 H 0.12 3.01 6.22 -52.48 -0.33 2.68 16 26 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 28 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.39 6.77 8.85 -40.82 -0.36 6.40 16 30 H 0.16 3.84 6.92 -52.49 -0.36 3.48 16 31 H 0.14 2.17 8.06 -52.49 -0.42 1.74 16 32 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.37 2.81 9.12 45.56 0.42 3.22 16 35 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 305.99 15.07 4.61 4.61 Total: -1.00 -29.21 305.99 -8.05 -37.26 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -3.12 Total: 15.38 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -4.47 Total: -21.21 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.44 Total: -42.08 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.48 Total: -8.03 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.21 -8.05 -37.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211106730.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.276 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds