Wall clock time and date at job start Mon Mar 30 2020 01:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48503 * 109.46995 * 270.00036 * 3 2 1 5 5 H 1.48499 * 109.47216 * 29.99947 * 3 2 1 6 6 H 1.48500 * 109.46932 * 149.99882 * 3 2 1 7 7 C 1.37877 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99862 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99841 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.46737 * 180.02562 * 9 7 2 11 11 O 1.42895 * 109.47099 * 60.00319 * 9 7 2 12 12 C 1.35774 * 117.00212 * 90.00203 * 11 9 7 13 13 N 1.32132 * 119.72656 * 0.02562 * 12 11 9 14 14 C 1.32017 * 121.72046 * 179.71370 * 13 12 11 15 15 C 1.38048 * 120.97925 * 0.53654 * 14 13 12 16 16 C 1.38765 * 119.34514 * 359.47589 * 15 14 13 17 17 C 1.38954 * 118.42279 * 0.25054 * 16 15 14 18 18 N 1.39964 * 120.51207 * 180.02562 * 17 16 15 19 19 C 1.50704 * 109.47395 * 300.00052 * 9 7 2 20 20 C 1.38232 * 119.99725 * 84.72672 * 19 9 7 21 21 C 1.38238 * 119.99775 * 179.81161 * 20 19 9 22 22 C 1.38236 * 120.00033 * 0.40067 * 21 20 19 23 23 C 1.38240 * 119.99811 * 359.85135 * 22 21 20 24 24 C 1.38235 * 120.00300 * 359.96097 * 23 22 21 25 25 H 0.96995 * 120.00180 * 0.02562 * 1 2 3 26 26 H 1.08008 * 119.50873 * 180.26555 * 14 13 12 27 27 H 1.08002 * 120.33034 * 179.75710 * 15 14 13 28 28 H 1.08003 * 120.78716 * 180.27548 * 16 15 14 29 29 H 0.97003 * 119.99453 * 0.02562 * 18 17 16 30 30 H 0.96991 * 120.00748 * 180.02562 * 18 17 16 31 31 H 1.07994 * 120.00335 * 0.02562 * 20 19 9 32 32 H 1.07997 * 120.00289 * 180.23122 * 21 20 19 33 33 H 1.08001 * 120.00521 * 179.83426 * 22 21 20 34 34 H 1.07994 * 119.99886 * 179.97438 * 23 22 21 35 35 H 1.07999 * 120.00184 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 1.9595 -3.3276 -0.0005 11 8 0.4292 -2.5746 -1.1670 12 6 0.9817 -3.1309 -2.2755 13 7 2.2269 -3.5713 -2.2363 14 6 2.8011 -4.1238 -3.2889 15 6 2.1209 -4.2536 -4.4831 16 6 0.8106 -3.8053 -4.5716 17 6 0.2299 -3.2331 -3.4464 18 7 -1.0891 -2.7667 -3.4867 19 6 0.3852 -2.5793 1.2302 20 6 -0.8703 -2.0007 1.2308 21 6 -1.6662 -2.0776 2.3585 22 6 -1.2033 -2.7259 3.4883 23 6 0.0543 -3.2999 3.4894 24 6 0.8486 -3.2264 2.3605 25 1 -0.4850 0.8400 -0.0004 26 1 3.8197 -4.4756 -3.2158 27 1 2.6021 -4.7038 -5.3388 28 1 0.2552 -3.8993 -5.4931 29 1 -1.6053 -2.8421 -4.3045 30 1 -1.4870 -2.3682 -2.6970 31 1 -1.2307 -1.4916 0.3493 32 1 -2.6485 -1.6289 2.3578 33 1 -1.8240 -2.7837 4.3702 34 1 0.4160 -3.8060 4.3721 35 1 1.8313 -3.6745 2.3615 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218316607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:16 Heat of formation + Delta-G solvation = 35.306240 kcal Electronic energy + Delta-G solvation = -20407.228353 eV Core-core repulsion = 17370.794103 eV Total energy + Delta-G solvation = -3036.434251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.71539 -38.22269 -36.43811 -34.42285 -33.00572 -30.86343 -30.34157 -29.65711 -27.96356 -26.84728 -23.63666 -22.30143 -22.00516 -21.32403 -20.08812 -17.56479 -17.00968 -16.36787 -16.04908 -15.62943 -14.95020 -14.67808 -14.17915 -14.11246 -13.79163 -13.46727 -12.92841 -12.63461 -12.49965 -12.30610 -11.84478 -11.55145 -11.35509 -11.29599 -10.98649 -10.67165 -10.55628 -10.42851 -10.05939 -9.44552 -9.24140 -8.80666 -8.66592 -8.39247 -7.80724 -7.50269 -6.62580 -6.01841 -4.32112 2.04835 2.08021 2.44153 2.59699 3.23502 3.29882 3.34053 4.27162 4.30755 4.38736 4.65795 4.98468 5.16616 5.34235 5.39887 5.66054 5.80362 5.85036 5.95332 6.09423 6.14141 6.39311 6.41882 6.65781 6.72813 6.80939 6.95857 7.08844 7.11533 7.30452 7.49425 7.61040 7.80323 7.87336 8.01201 8.06648 8.24543 8.31617 8.54040 8.81421 8.95492 9.41959 10.82122 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014929 B = 0.007932 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.059081 B = 3529.135039 C = 4344.024813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.079 3.921 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.066 0.934 9 C 0.246 3.754 10 H 0.052 0.948 11 O -0.290 6.290 12 C 0.304 3.696 13 N -0.502 5.502 14 C 0.072 3.928 15 C -0.191 4.191 16 C -0.147 4.147 17 C 0.139 3.861 18 N -0.869 5.869 19 C -0.045 4.045 20 C -0.048 4.048 21 C -0.153 4.153 22 C -0.145 4.145 23 C -0.148 4.148 24 C -0.124 4.124 25 H 0.262 0.738 26 H 0.142 0.858 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.390 0.610 30 H 0.408 0.592 31 H 0.163 0.837 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.189 -5.809 -4.193 7.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.084 0.916 9 C 0.193 3.807 10 H 0.070 0.930 11 O -0.195 6.195 12 C 0.117 3.883 13 N -0.227 5.227 14 C -0.083 4.083 15 C -0.213 4.213 16 C -0.177 4.177 17 C 0.032 3.968 18 N -0.410 5.410 19 C -0.046 4.046 20 C -0.067 4.067 21 C -0.172 4.172 22 C -0.163 4.163 23 C -0.167 4.167 24 C -0.143 4.143 25 H 0.073 0.927 26 H 0.160 0.840 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.217 0.783 30 H 0.238 0.762 31 H 0.180 0.820 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.074 -5.484 -3.317 6.736 hybrid contribution -0.044 1.174 -0.617 1.327 sum -2.118 -4.309 -3.934 6.208 Atomic orbital electron populations 1.69783 1.05803 1.26135 1.47260 1.25048 0.94882 0.99380 0.93334 0.86545 0.80097 0.82922 0.78207 1.20542 1.21013 1.19682 1.21375 0.93306 0.89991 1.51085 0.91576 1.18830 0.87003 0.96956 0.77938 0.93019 1.86365 1.42394 1.72378 1.18375 1.19616 0.88079 0.92587 0.87989 1.67358 1.09931 1.13792 1.31653 1.22020 0.99468 0.98454 0.88388 1.21463 0.95150 1.05448 0.99216 1.20637 0.96195 1.04171 0.96705 1.17927 0.87026 0.99138 0.92709 1.42187 1.11235 1.70630 1.16990 1.19951 0.94370 0.94810 0.95460 1.21853 0.92872 0.92545 0.99445 1.21136 0.99639 1.01641 0.94740 1.20833 0.96409 1.01212 0.97849 1.20712 0.95307 1.02974 0.97683 1.20790 0.99092 1.00767 0.93626 0.92710 0.84020 0.86118 0.85848 0.78339 0.76178 0.82036 0.88007 0.88218 0.87877 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.22 8.51 55.43 0.47 -21.75 16 2 C 0.08 2.08 5.24 -17.82 -0.09 1.99 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.05 8.89 -34.44 -0.31 -14.36 16 8 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 9 C 0.25 6.18 2.36 -29.04 -0.07 6.11 16 10 H 0.05 1.31 6.90 -51.93 -0.36 0.95 16 11 O -0.29 -7.02 7.58 -19.03 -0.14 -7.16 16 12 C 0.30 6.75 7.47 -16.94 -0.13 6.62 16 13 N -0.50 -10.88 8.65 -13.16 -0.11 -10.99 16 14 C 0.07 1.27 11.17 -17.54 -0.20 1.07 16 15 C -0.19 -2.94 10.10 -39.46 -0.40 -3.34 16 16 C -0.15 -2.32 10.04 -39.12 -0.39 -2.71 16 17 C 0.14 2.59 6.80 -83.40 -0.57 2.02 16 18 N -0.87 -13.81 9.10 32.60 0.30 -13.51 16 19 C -0.05 -1.08 4.80 -104.62 -0.50 -1.59 16 20 C -0.05 -1.12 7.46 -39.58 -0.30 -1.42 16 21 C -0.15 -3.16 10.05 -39.58 -0.40 -3.55 16 22 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 23 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 24 C -0.12 -2.70 9.68 -39.58 -0.38 -3.08 16 25 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 26 H 0.14 2.07 8.06 -52.48 -0.42 1.64 16 27 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 29 H 0.39 4.78 8.86 -40.82 -0.36 4.42 16 30 H 0.41 6.99 8.22 -40.82 -0.34 6.66 16 31 H 0.16 3.98 5.50 -52.49 -0.29 3.69 16 32 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 300.84 15.07 4.53 4.53 Total: -1.00 -28.86 300.84 -8.35 -37.21 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -3.85 Total: 14.37 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -4.52 Total: -18.70 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.65 Total: -46.25 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.14 Total: -7.16 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.86 -8.35 -37.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218316607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.515 kcal (2) G-P(sol) polarization free energy of solvation -28.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds