Wall clock time and date at job start Mon Mar 30 2020 01:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48503 * 109.46995 * 270.00036 * 3 2 1 5 5 H 1.48499 * 109.47216 * 29.99947 * 3 2 1 6 6 H 1.48500 * 109.46932 * 149.99882 * 3 2 1 7 7 C 1.37877 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99862 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99841 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.46737 * 180.02562 * 9 7 2 11 11 O 1.42895 * 109.47099 * 60.00319 * 9 7 2 12 12 C 1.35774 * 117.00212 * 90.00203 * 11 9 7 13 13 N 1.32132 * 119.72656 * 0.02562 * 12 11 9 14 14 C 1.32017 * 121.72046 * 179.71370 * 13 12 11 15 15 C 1.38048 * 120.97925 * 0.53654 * 14 13 12 16 16 C 1.38765 * 119.34514 * 359.47589 * 15 14 13 17 17 C 1.38954 * 118.42279 * 0.25054 * 16 15 14 18 18 N 1.39964 * 120.51207 * 180.02562 * 17 16 15 19 19 C 1.50704 * 109.47395 * 300.00052 * 9 7 2 20 20 C 1.38232 * 119.99725 * 84.72672 * 19 9 7 21 21 C 1.38238 * 119.99775 * 179.81161 * 20 19 9 22 22 C 1.38236 * 120.00033 * 0.40067 * 21 20 19 23 23 C 1.38240 * 119.99811 * 359.85135 * 22 21 20 24 24 C 1.38235 * 120.00300 * 359.96097 * 23 22 21 25 25 H 0.96995 * 120.00180 * 0.02562 * 1 2 3 26 26 H 1.08008 * 119.50873 * 180.26555 * 14 13 12 27 27 H 1.08002 * 120.33034 * 179.75710 * 15 14 13 28 28 H 1.08003 * 120.78716 * 180.27548 * 16 15 14 29 29 H 0.97003 * 119.99453 * 0.02562 * 18 17 16 30 30 H 0.96991 * 120.00748 * 180.02562 * 18 17 16 31 31 H 1.07994 * 120.00335 * 0.02562 * 20 19 9 32 32 H 1.07997 * 120.00289 * 180.23122 * 21 20 19 33 33 H 1.08001 * 120.00521 * 179.83426 * 22 21 20 34 34 H 1.07994 * 119.99886 * 179.97438 * 23 22 21 35 35 H 1.07999 * 120.00184 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 1.9595 -3.3276 -0.0005 11 8 0.4292 -2.5746 -1.1670 12 6 0.9817 -3.1309 -2.2755 13 7 2.2269 -3.5713 -2.2363 14 6 2.8011 -4.1238 -3.2889 15 6 2.1209 -4.2536 -4.4831 16 6 0.8106 -3.8053 -4.5716 17 6 0.2299 -3.2331 -3.4464 18 7 -1.0891 -2.7667 -3.4867 19 6 0.3852 -2.5793 1.2302 20 6 -0.8703 -2.0007 1.2308 21 6 -1.6662 -2.0776 2.3585 22 6 -1.2033 -2.7259 3.4883 23 6 0.0543 -3.2999 3.4894 24 6 0.8486 -3.2264 2.3605 25 1 -0.4850 0.8400 -0.0004 26 1 3.8197 -4.4756 -3.2158 27 1 2.6021 -4.7038 -5.3388 28 1 0.2552 -3.8993 -5.4931 29 1 -1.6053 -2.8421 -4.3045 30 1 -1.4870 -2.3682 -2.6970 31 1 -1.2307 -1.4916 0.3493 32 1 -2.6485 -1.6289 2.3578 33 1 -1.8240 -2.7837 4.3702 34 1 0.4160 -3.8060 4.3721 35 1 1.8313 -3.6745 2.3615 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218316607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:16 Heat of formation + Delta-G solvation = 16.887474 kcal Electronic energy + Delta-G solvation = -20408.027051 eV Core-core repulsion = 17370.794103 eV Total energy + Delta-G solvation = -3037.232948 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.19067 -39.84957 -38.04908 -35.79199 -34.87487 -32.47287 -31.86321 -31.28959 -29.38968 -28.65774 -25.37167 -23.82616 -23.46189 -22.91162 -21.77528 -19.26762 -18.47528 -17.96231 -17.50295 -17.19232 -16.82669 -16.12853 -15.83124 -15.65563 -15.27498 -15.03850 -14.65296 -14.17739 -13.95349 -13.86719 -13.42312 -13.26697 -13.05312 -12.87877 -12.80989 -12.36163 -12.16771 -12.04914 -11.74642 -11.23467 -10.94931 -10.75083 -10.17382 -9.84758 -9.44941 -9.21363 -8.08634 -7.91475 -6.34658 0.66582 0.69905 0.79233 0.96836 1.34739 1.36409 1.45214 2.36562 2.69242 3.09207 3.20779 3.22655 3.32770 3.94749 4.15490 4.32374 4.36320 4.40811 4.44972 4.64623 4.73818 4.84206 4.95897 5.08227 5.16444 5.22467 5.43145 5.45440 5.60852 5.66532 5.84535 5.89456 6.04610 6.12576 6.32322 6.48611 6.52806 6.67316 7.09658 7.14547 7.38944 7.45536 8.83982 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014929 B = 0.007932 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.059081 B = 3529.135039 C = 4344.024813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.044 3.956 3 Si 0.944 3.056 4 H -0.281 1.281 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.044 0.956 9 C 0.256 3.744 10 H 0.030 0.970 11 O -0.305 6.305 12 C 0.249 3.751 13 N -0.536 5.536 14 C 0.048 3.952 15 C -0.169 4.169 16 C -0.139 4.139 17 C 0.127 3.873 18 N -0.861 5.861 19 C -0.074 4.074 20 C -0.066 4.066 21 C -0.158 4.158 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.142 4.142 25 H 0.262 0.738 26 H 0.166 0.834 27 H 0.167 0.833 28 H 0.165 0.835 29 H 0.407 0.593 30 H 0.401 0.599 31 H 0.142 0.858 32 H 0.124 0.876 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.863 -6.408 -4.704 8.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.160 4.160 3 Si 0.770 3.230 4 H -0.207 1.207 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.062 0.938 9 C 0.201 3.799 10 H 0.048 0.952 11 O -0.212 6.212 12 C 0.064 3.936 13 N -0.261 5.261 14 C -0.107 4.107 15 C -0.189 4.189 16 C -0.169 4.169 17 C 0.020 3.980 18 N -0.403 5.403 19 C -0.074 4.074 20 C -0.086 4.086 21 C -0.176 4.176 22 C -0.156 4.156 23 C -0.161 4.161 24 C -0.161 4.161 25 H 0.072 0.928 26 H 0.183 0.817 27 H 0.185 0.815 28 H 0.183 0.817 29 H 0.238 0.762 30 H 0.229 0.771 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.770 -6.097 -3.860 7.729 hybrid contribution 0.190 1.216 -0.572 1.357 sum -2.580 -4.881 -4.432 7.079 Atomic orbital electron populations 1.69951 1.06088 1.26336 1.46971 1.25565 0.95770 1.01356 0.93295 0.85790 0.79049 0.80221 0.77907 1.20702 1.20073 1.20013 1.21427 0.92462 0.91768 1.52718 0.93788 1.18535 0.87101 0.95100 0.79134 0.95166 1.86267 1.42251 1.73893 1.18785 1.20003 0.89339 0.95560 0.88690 1.67246 1.10389 1.14505 1.33965 1.22597 1.00802 0.98697 0.88634 1.21970 0.94687 1.02821 0.99445 1.21179 0.96578 1.02145 0.97003 1.18167 0.87802 0.99588 0.92460 1.42120 1.10583 1.70083 1.17539 1.20062 0.95024 0.96566 0.95762 1.21696 0.93286 0.93563 1.00005 1.21414 1.00277 1.01571 0.94340 1.21274 0.96516 0.99344 0.98464 1.21126 0.95053 1.02091 0.97810 1.21016 0.99879 1.01114 0.94060 0.92779 0.81681 0.81547 0.81746 0.76212 0.77103 0.84081 0.85769 0.84195 0.84270 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.10 8.51 21.45 0.18 -45.92 16 2 C 0.04 2.42 5.24 84.65 0.44 2.86 16 3 Si 0.94 44.20 29.54 68.60 2.03 46.23 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.55 -31.18 8.89 25.60 0.23 -30.95 16 8 H 0.04 2.59 7.81 -2.91 -0.02 2.57 16 9 C 0.26 13.65 2.36 29.10 0.07 13.72 16 10 H 0.03 1.66 6.90 -2.38 -0.02 1.65 16 11 O -0.31 -15.68 7.58 -91.02 -0.69 -16.37 16 12 C 0.25 11.53 7.47 84.96 0.63 12.16 16 13 N -0.54 -24.14 8.65 -308.43 -2.67 -26.81 16 14 C 0.05 1.67 11.17 84.62 0.95 2.61 16 15 C -0.17 -4.67 10.10 22.35 0.23 -4.45 16 16 C -0.14 -4.01 10.04 22.57 0.23 -3.79 16 17 C 0.13 4.72 6.80 38.32 0.26 4.98 16 18 N -0.86 -27.23 9.10 -50.79 -0.46 -27.70 16 19 C -0.07 -3.67 4.80 -19.86 -0.10 -3.76 16 20 C -0.07 -3.18 7.46 22.27 0.17 -3.01 16 21 C -0.16 -6.34 10.05 22.27 0.22 -6.11 16 22 C -0.14 -4.91 10.05 22.27 0.22 -4.69 16 23 C -0.14 -5.28 10.05 22.27 0.22 -5.05 16 24 C -0.14 -6.28 9.68 22.27 0.22 -6.06 16 25 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 26 H 0.17 4.66 8.06 -2.91 -0.02 4.63 16 27 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 28 H 0.17 3.37 8.06 -2.91 -0.02 3.34 16 29 H 0.41 9.43 8.86 -92.71 -0.82 8.61 16 30 H 0.40 14.19 8.22 -92.71 -0.76 13.43 16 31 H 0.14 7.28 5.50 -2.91 -0.02 7.26 16 32 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 33 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 34 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 35 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -66.30 300.84 1.93 -64.37 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -0.45 Total: 37.74 kcal Atomic # 6 Polarization: -35.54 SS G_CDS: 3.99 Total: -31.55 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -2.95 Total: -100.43 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.69 Total: -16.37 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -66.30 1.93 -64.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218316607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.258 kcal (2) G-P(sol) polarization free energy of solvation -66.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds