Wall clock time and date at job start Mon Mar 30 2020 01:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00212 * 2 1 4 4 H 1.48500 * 109.47182 * 270.00348 * 3 2 1 5 5 H 1.48507 * 109.46918 * 29.99917 * 3 2 1 6 6 H 1.48494 * 109.47493 * 150.00177 * 3 2 1 7 7 C 1.37878 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99895 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99803 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46704 * 179.97438 * 9 7 2 11 11 O 1.42899 * 109.47418 * 59.99700 * 9 7 2 12 12 C 1.42903 * 113.99629 * 90.00093 * 11 9 7 13 13 C 1.50701 * 109.46878 * 179.97438 * 12 11 9 14 14 N 1.31789 * 119.12361 * 269.72665 * 13 12 11 15 15 C 1.32334 * 120.81756 * 179.75972 * 14 13 12 16 16 C 1.38598 * 119.10357 * 0.50506 * 15 14 13 17 17 C 1.38596 * 118.40103 * 359.75408 * 16 15 14 18 18 N 1.31798 * 119.12090 * 90.00156 * 13 12 11 19 19 C 1.50706 * 109.46765 * 299.99615 * 9 7 2 20 20 C 1.38239 * 119.99629 * 84.73576 * 19 9 7 21 21 C 1.38232 * 119.99416 * 179.78585 * 20 19 9 22 22 C 1.38244 * 120.00463 * 0.43547 * 21 20 19 23 23 C 1.38235 * 119.99652 * 359.81397 * 22 21 20 24 24 C 1.38233 * 120.00058 * 264.99856 * 19 9 7 25 25 H 0.97006 * 119.99845 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47382 * 59.99956 * 12 11 9 27 27 H 1.09001 * 109.46938 * 299.99942 * 12 11 9 28 28 H 1.08003 * 120.44910 * 180.23407 * 15 14 13 29 29 H 1.07999 * 120.79862 * 179.76731 * 16 15 14 30 30 H 1.07999 * 120.44851 * 180.02562 * 17 16 15 31 31 H 1.07996 * 120.00135 * 359.97438 * 20 19 9 32 32 H 1.08000 * 119.99846 * 180.26713 * 21 20 19 33 33 H 1.07990 * 120.00092 * 179.83476 * 22 21 20 34 34 H 1.07998 * 120.00100 * 179.97438 * 23 22 21 35 35 H 1.08005 * 120.00226 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 1.9593 -3.3276 0.0005 11 8 0.4298 -2.5751 -1.1665 12 6 1.0751 -3.1715 -2.2934 13 6 0.1224 -3.2004 -3.4607 14 7 -0.6555 -4.2510 -3.6278 15 6 -1.5078 -4.3095 -4.6385 16 6 -1.5674 -3.2519 -5.5322 17 6 -0.7300 -2.1669 -5.3264 18 7 0.0932 -2.1767 -4.2903 19 6 0.3841 -2.5786 1.2308 20 6 -0.8714 -2.0000 1.2302 21 6 -1.6681 -2.0768 2.3572 22 6 -1.2060 -2.7243 3.4878 23 6 0.0515 -3.2983 3.4900 24 6 0.8467 -3.2253 2.3616 25 1 -0.4850 0.8401 -0.0004 26 1 1.3746 -4.1894 -2.0440 27 1 1.9569 -2.5879 -2.5580 28 1 -2.1452 -5.1718 -4.7676 29 1 -2.2501 -3.2727 -6.3688 30 1 -0.7493 -1.3247 -6.0022 31 1 -1.2308 -1.4908 0.3483 32 1 -2.6507 -1.6285 2.3553 33 1 -1.8274 -2.7819 4.3691 34 1 0.4128 -3.8038 4.3734 35 1 1.8291 -3.6740 2.3633 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222261792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:49 Heat of formation + Delta-G solvation = 44.088140 kcal Electronic energy + Delta-G solvation = -19978.617515 eV Core-core repulsion = 16942.564076 eV Total energy + Delta-G solvation = -3036.053439 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.66761 -38.21614 -36.32350 -33.41427 -33.09076 -31.93761 -30.34715 -29.57339 -27.12565 -26.22877 -24.27568 -22.89059 -22.13474 -21.24038 -20.09638 -17.26769 -16.85682 -16.71533 -15.83831 -15.34568 -15.07538 -14.73962 -14.17526 -13.98826 -13.70497 -13.30389 -13.26561 -13.13939 -12.40927 -12.08896 -11.93200 -11.46662 -11.11545 -10.91614 -10.73732 -10.55970 -10.54504 -10.24963 -10.07063 -9.72722 -9.43422 -9.14483 -8.92023 -8.69470 -8.12057 -7.69751 -7.38670 -5.91033 -4.24660 1.10534 1.36620 2.53054 2.68727 3.29337 3.35562 3.37798 3.90952 4.29098 4.37489 4.44706 4.75773 5.04196 5.13195 5.19156 5.28348 5.41939 5.76468 5.82306 5.86855 6.01070 6.12906 6.15743 6.38931 6.43148 6.62631 6.65253 6.85100 6.95132 7.17099 7.28441 7.34821 7.56396 7.68052 7.89538 8.07621 8.11451 8.36232 8.44983 8.53612 8.94350 9.50707 10.93099 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.006973 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.800496 B = 4014.592724 C = 5163.202879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.086 3.914 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.246 3.754 10 H 0.021 0.979 11 O -0.360 6.360 12 C 0.136 3.864 13 C 0.342 3.658 14 N -0.508 5.508 15 C 0.142 3.858 16 C -0.242 4.242 17 C 0.144 3.856 18 N -0.496 5.496 19 C -0.040 4.040 20 C -0.043 4.043 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.150 4.150 24 C -0.128 4.128 25 H 0.261 0.739 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.164 0.836 29 H 0.142 0.858 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.267 -5.960 -6.572 9.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.120 4.120 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.191 3.809 10 H 0.039 0.961 11 O -0.278 6.278 12 C 0.057 3.943 13 C 0.075 3.925 14 N -0.223 5.223 15 C -0.025 4.025 16 C -0.264 4.264 17 C -0.023 4.023 18 N -0.210 5.210 19 C -0.040 4.040 20 C -0.062 4.062 21 C -0.173 4.173 22 C -0.164 4.164 23 C -0.168 4.168 24 C -0.147 4.147 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.181 0.819 29 H 0.160 0.840 30 H 0.181 0.819 31 H 0.180 0.820 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.954 -5.738 -5.779 8.663 hybrid contribution -0.030 1.055 -0.629 1.229 sum -2.985 -4.682 -6.409 8.479 Atomic orbital electron populations 1.69824 1.05867 1.25898 1.46369 1.24978 0.94723 0.99162 0.93133 0.86613 0.79966 0.83279 0.78248 1.20346 1.21122 1.19862 1.21421 0.92953 0.90759 1.52938 0.92003 1.18600 0.86961 0.94866 0.80485 0.96126 1.88082 1.40175 1.80701 1.18870 1.20661 0.91849 0.97408 0.84371 1.23252 0.91808 0.83890 0.93568 1.68299 1.05811 1.27764 1.20424 1.23192 0.93390 0.97327 0.88552 1.22839 1.03229 0.97276 1.03053 1.23252 0.89226 0.96680 0.93098 1.68353 1.21953 1.26959 1.03730 1.19951 0.94326 0.94369 0.95376 1.21856 0.92801 0.92308 0.99252 1.21143 0.99618 1.01752 0.94790 1.20808 0.96439 1.01385 0.97802 1.20689 0.95358 1.03118 0.97679 1.20780 0.98961 1.01178 0.93747 0.92847 0.92822 0.91227 0.81906 0.83994 0.81899 0.82016 0.88151 0.88330 0.88017 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.14 8.50 55.43 0.47 -22.66 16 2 C 0.09 2.33 5.24 -17.82 -0.09 2.23 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -14.59 8.89 -34.44 -0.31 -14.90 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.25 6.17 2.59 -29.03 -0.08 6.09 16 10 H 0.02 0.49 7.70 -51.93 -0.40 0.09 16 11 O -0.36 -9.04 8.52 -35.23 -0.30 -9.34 16 12 C 0.14 2.90 6.17 36.01 0.22 3.13 16 13 C 0.34 6.82 7.27 -157.20 -1.14 5.68 16 14 N -0.51 -9.15 10.33 -10.72 -0.11 -9.26 16 15 C 0.14 1.92 11.30 -17.20 -0.19 1.73 16 16 C -0.24 -2.88 10.17 -39.32 -0.40 -3.28 16 17 C 0.14 2.06 11.31 -17.20 -0.19 1.87 16 18 N -0.50 -9.49 10.33 -10.73 -0.11 -9.61 16 19 C -0.04 -0.97 4.80 -104.62 -0.50 -1.47 16 20 C -0.04 -1.07 7.46 -39.58 -0.30 -1.36 16 21 C -0.15 -3.37 10.05 -39.58 -0.40 -3.77 16 22 C -0.15 -2.91 10.05 -39.58 -0.40 -3.31 16 23 C -0.15 -3.00 10.05 -39.58 -0.40 -3.39 16 24 C -0.13 -2.82 9.68 -39.58 -0.38 -3.20 16 25 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 27 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 28 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 29 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 31 H 0.16 4.37 5.50 -52.49 -0.29 4.08 16 32 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 33 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.10 2.08 8.06 -52.48 -0.42 1.65 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -31.09 305.52 -9.06 -40.16 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.04 Total: 3.98 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -4.56 Total: -13.96 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.25 Total: -41.54 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.30 Total: -9.34 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.09 -9.06 -40.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222261792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.244 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds