Wall clock time and date at job start Mon Mar 30 2020 01:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99908 * 2 1 4 4 H 1.48502 * 109.47144 * 269.99953 * 3 2 1 5 5 H 1.48503 * 109.47465 * 30.00206 * 3 2 1 6 6 H 1.48505 * 109.46930 * 149.99977 * 3 2 1 7 7 C 1.37875 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00312 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00175 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47369 * 179.97438 * 9 7 2 11 11 O 1.42907 * 109.46944 * 59.99761 * 9 7 2 12 12 C 1.42896 * 113.99550 * 89.99895 * 11 9 7 13 13 C 1.50706 * 109.46854 * 179.97438 * 12 11 9 14 14 C 1.38386 * 120.00040 * 0.02562 * 13 12 11 15 15 N 1.32124 * 119.99712 * 179.97438 * 14 13 12 16 16 C 1.32158 * 120.00097 * 359.97438 * 15 14 13 17 17 C 1.38336 * 120.00075 * 0.26620 * 16 15 14 18 18 N 1.32127 * 120.00065 * 179.97438 * 13 12 11 19 19 C 1.50703 * 109.46914 * 300.00529 * 9 7 2 20 20 C 1.38231 * 120.00187 * 84.72432 * 19 9 7 21 21 C 1.38236 * 119.99418 * 179.78770 * 20 19 9 22 22 C 1.38236 * 120.00347 * 0.43760 * 21 20 19 23 23 C 1.38228 * 119.99846 * 359.81575 * 22 21 20 24 24 C 1.38235 * 119.99361 * 264.99559 * 19 9 7 25 25 H 0.97003 * 120.00107 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47279 * 60.00547 * 12 11 9 27 27 H 1.09003 * 109.47722 * 300.00166 * 12 11 9 28 28 H 1.08005 * 120.00220 * 359.95252 * 14 13 12 29 29 H 1.08002 * 119.99718 * 179.97438 * 16 15 14 30 30 H 1.07998 * 120.00403 * 179.72028 * 17 16 15 31 31 H 1.07995 * 120.00415 * 359.97438 * 20 19 9 32 32 H 1.08002 * 119.99923 * 180.27340 * 21 20 19 33 33 H 1.08000 * 119.99696 * 179.83347 * 22 21 20 34 34 H 1.08000 * 120.00498 * 179.97438 * 23 22 21 35 35 H 1.08006 * 120.00372 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 1.9592 -3.3277 -0.0015 11 8 0.4289 -2.5746 -1.1670 12 6 1.0734 -3.1703 -2.2947 13 6 0.1198 -3.1987 -3.4613 14 6 -1.1593 -2.6892 -3.3220 15 7 -1.9951 -2.7136 -4.3449 16 6 -1.6094 -3.2241 -5.5013 17 6 -0.3324 -3.7379 -5.6392 18 7 0.5053 -3.7090 -4.6175 19 6 0.3850 -2.5792 1.2302 20 6 -0.8704 -2.0006 1.2308 21 6 -1.6664 -2.0779 2.3584 22 6 -1.2035 -2.7259 3.4883 23 6 0.0540 -3.2999 3.4894 24 6 0.8484 -3.2264 2.3604 25 1 -0.4850 0.8401 0.0004 26 1 1.3730 -4.1885 -2.0460 27 1 1.9551 -2.5867 -2.5597 28 1 -1.4744 -2.2720 -2.3769 29 1 -2.2929 -3.2444 -6.3374 30 1 -0.0187 -4.1592 -6.5828 31 1 -1.2306 -1.4909 0.3495 32 1 -2.6491 -1.6297 2.3574 33 1 -1.8244 -2.7839 4.3700 34 1 0.4160 -3.8059 4.3722 35 1 1.8308 -3.6751 2.3612 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222474437.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:38 Heat of formation + Delta-G solvation = 23.076834 kcal Electronic energy + Delta-G solvation = -20032.119875 eV Core-core repulsion = 16995.155318 eV Total energy + Delta-G solvation = -3036.964557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.95718 -39.93895 -38.14897 -35.37834 -34.79714 -33.03004 -31.90013 -31.23100 -28.75188 -27.77278 -25.50908 -24.66657 -23.55953 -22.87345 -21.82612 -18.90405 -18.25274 -18.03166 -17.35003 -17.11381 -16.65643 -16.32789 -16.21966 -15.64341 -15.23248 -14.94870 -14.86666 -14.23985 -13.84264 -13.76581 -13.32364 -13.18929 -12.92760 -12.76520 -12.66205 -12.57551 -12.21567 -12.05562 -11.86945 -11.48705 -11.08668 -10.70754 -10.27411 -9.98525 -9.83244 -9.38589 -9.14583 -7.90105 -6.31610 -0.12273 0.17852 0.84755 1.02413 1.38360 1.41413 1.48285 2.39881 2.66150 2.76587 3.19680 3.34661 3.38016 3.61667 3.82355 4.06028 4.30404 4.38284 4.41268 4.45851 4.50942 4.62589 4.68564 4.73668 4.77733 4.91167 5.14431 5.24785 5.49288 5.49955 5.65153 5.70802 5.91062 6.05989 6.18194 6.34520 6.35830 6.54109 6.63762 6.85059 7.04155 7.46166 8.89077 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.015309 B = 0.006751 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.580936 B = 4146.733017 C = 5086.900482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.048 3.952 3 Si 0.940 3.060 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.565 4.565 8 H 0.053 0.947 9 C 0.247 3.753 10 H 0.024 0.976 11 O -0.380 6.380 12 C 0.125 3.875 13 C 0.074 3.926 14 C 0.062 3.938 15 N -0.463 5.463 16 C 0.042 3.958 17 C 0.055 3.945 18 N -0.460 5.460 19 C -0.068 4.068 20 C -0.065 4.065 21 C -0.162 4.162 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.141 4.141 25 H 0.259 0.741 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.160 0.840 29 H 0.211 0.789 30 H 0.215 0.785 31 H 0.140 0.860 32 H 0.118 0.882 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.645 -6.681 -4.922 8.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.157 4.157 3 Si 0.766 3.234 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.602 4.602 8 H 0.071 0.929 9 C 0.191 3.809 10 H 0.042 0.958 11 O -0.299 6.299 12 C 0.047 3.953 13 C -0.064 4.064 14 C -0.095 4.095 15 N -0.178 5.178 16 C -0.119 4.119 17 C -0.106 4.106 18 N -0.177 5.177 19 C -0.069 4.069 20 C -0.084 4.084 21 C -0.180 4.180 22 C -0.159 4.159 23 C -0.163 4.163 24 C -0.159 4.159 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.178 0.822 29 H 0.228 0.772 30 H 0.231 0.769 31 H 0.158 0.842 32 H 0.136 0.864 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.986 -6.465 -4.870 8.627 hybrid contribution 0.897 1.196 0.115 1.500 sum -2.089 -5.269 -4.755 7.398 Atomic orbital electron populations 1.69984 1.06272 1.26105 1.46672 1.25522 0.95540 1.01281 0.93316 0.85866 0.79074 0.80558 0.77898 1.20622 1.20885 1.19731 1.21633 0.92805 0.92154 1.53588 0.92925 1.18534 0.87186 0.94042 0.81091 0.95850 1.87902 1.40682 1.81433 1.19888 1.20578 0.92740 0.97249 0.84748 1.21962 0.94879 0.95524 0.94055 1.23441 0.91101 0.96278 0.98724 1.68518 1.35596 1.13046 1.00665 1.24522 0.97130 0.93985 0.96264 1.24465 0.91047 0.96353 0.98725 1.68077 1.36554 1.13518 0.99558 1.20067 0.94744 0.96072 0.95977 1.21693 0.93531 0.93547 0.99676 1.21395 1.00203 1.01824 0.94627 1.21233 0.96737 0.99644 0.98310 1.21125 0.95003 1.02146 0.98066 1.21047 0.99921 1.01132 0.93836 0.93059 0.91734 0.92666 0.82239 0.77217 0.76873 0.84250 0.86399 0.84665 0.84429 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -45.41 8.50 21.45 0.18 -45.23 16 2 C 0.05 2.53 5.24 84.65 0.44 2.97 16 3 Si 0.94 42.61 29.54 68.60 2.03 44.64 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.56 -29.83 8.89 25.60 0.23 -29.60 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 9 C 0.25 12.02 2.59 29.10 0.08 12.09 16 10 H 0.02 1.08 7.70 -2.39 -0.02 1.06 16 11 O -0.38 -17.95 7.02 -148.98 -1.05 -19.00 16 12 C 0.13 5.12 6.29 71.24 0.45 5.57 16 13 C 0.07 2.79 6.79 42.55 0.29 3.08 16 14 C 0.06 2.40 10.56 84.68 0.89 3.29 16 15 N -0.46 -15.54 10.50 -195.22 -2.05 -17.59 16 16 C 0.04 1.00 11.22 84.67 0.95 1.95 16 17 C 0.06 1.30 11.22 84.67 0.95 2.25 16 18 N -0.46 -15.01 10.42 -183.29 -1.91 -16.92 16 19 C -0.07 -3.20 4.80 -19.87 -0.10 -3.30 16 20 C -0.07 -3.08 7.46 22.27 0.17 -2.92 16 21 C -0.16 -6.56 10.05 22.27 0.22 -6.33 16 22 C -0.14 -5.01 10.05 22.27 0.22 -4.79 16 23 C -0.15 -5.19 10.05 22.27 0.22 -4.96 16 24 C -0.14 -5.82 9.68 22.27 0.22 -5.60 16 25 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 26 H 0.06 2.43 8.08 -2.39 -0.02 2.41 16 27 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.16 6.91 7.01 -2.91 -0.02 6.89 16 29 H 0.21 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.21 2.77 8.06 -2.91 -0.02 2.74 16 31 H 0.14 7.21 5.50 -2.91 -0.02 7.20 16 32 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 33 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 34 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 35 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -62.29 303.08 3.53 -58.76 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 1.09 Total: 21.63 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: 5.24 Total: -26.29 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -3.78 Total: -79.74 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -1.05 Total: -19.00 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -62.29 3.53 -58.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222474437.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.835 kcal (2) G-P(sol) polarization free energy of solvation -62.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds