Wall clock time and date at job start Mon Mar 30 2020 01:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00025 * 2 1 4 4 H 1.48500 * 109.47037 * 239.99579 * 3 2 1 5 5 H 1.48503 * 109.47108 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47309 * 119.99686 * 3 2 1 7 7 C 1.37879 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99619 * 185.14841 * 7 2 1 9 9 C 1.50698 * 120.00266 * 5.15152 * 7 2 1 10 10 H 1.09001 * 109.47075 * 24.87405 * 9 7 2 11 11 O 1.42901 * 109.46865 * 144.86877 * 9 7 2 12 12 C 1.42901 * 113.99984 * 269.99871 * 11 9 7 13 13 C 1.50698 * 109.46960 * 180.02562 * 12 11 9 14 14 C 1.38396 * 120.00253 * 359.97344 * 13 12 11 15 15 N 1.32128 * 119.99521 * 179.76793 * 14 13 12 16 16 C 1.32152 * 120.00096 * 0.51187 * 15 14 13 17 17 C 1.38340 * 120.00013 * 359.49475 * 16 15 14 18 18 N 1.32128 * 120.00172 * 180.02562 * 13 12 11 19 19 C 1.50697 * 109.47125 * 264.86756 * 9 7 2 20 20 C 1.38230 * 120.00296 * 277.72120 * 19 9 7 21 21 C 1.38237 * 120.00435 * 179.78613 * 20 19 9 22 22 C 1.38236 * 119.99268 * 0.44612 * 21 20 19 23 23 C 1.38235 * 120.00310 * 359.80577 * 22 21 20 24 24 C 1.38232 * 119.99976 * 359.97438 * 23 22 21 25 25 H 0.97002 * 119.99915 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47233 * 60.00475 * 12 11 9 27 27 H 1.09001 * 109.47423 * 300.00082 * 12 11 9 28 28 H 1.07994 * 119.99802 * 0.02715 * 14 13 12 29 29 H 1.07996 * 119.99992 * 179.76587 * 16 15 14 30 30 H 1.08009 * 119.99718 * 180.27695 * 17 16 15 31 31 H 1.08007 * 120.00106 * 359.97438 * 20 19 9 32 32 H 1.07998 * 120.00261 * 180.27404 * 21 20 19 33 33 H 1.08005 * 119.99699 * 179.83371 * 22 21 20 34 34 H 1.07997 * 120.00071 * 180.02562 * 23 22 21 35 35 H 1.08006 * 119.99865 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0812 -1.1960 0.0845 9 6 1.2555 -2.4966 -0.1161 10 1 0.3028 -2.3243 -0.6168 11 8 2.0314 -3.4258 -0.8754 12 6 1.7807 -3.3800 -2.2815 13 6 2.6476 -4.3959 -2.9796 14 6 3.5128 -5.1885 -2.2458 15 7 4.2694 -6.0824 -2.8575 16 6 4.2074 -6.2126 -4.1711 17 6 3.3426 -5.4202 -4.9047 18 7 2.5824 -4.5293 -4.2925 19 6 1.0057 -3.0573 1.2602 20 6 1.9958 -3.7754 1.9042 21 6 1.7682 -4.2861 3.1685 22 6 0.5471 -4.0863 3.7849 23 6 -0.4449 -3.3726 3.1388 24 6 -0.2156 -2.8582 1.8764 25 1 -0.4850 0.8401 -0.0004 26 1 2.0115 -2.3841 -2.6594 27 1 0.7315 -3.6065 -2.4711 28 1 3.5664 -5.0793 -1.1727 29 1 4.8286 -6.9407 -4.6715 30 1 3.2887 -5.5298 -5.9779 31 1 2.9484 -3.9351 1.4209 32 1 2.5433 -4.8433 3.6735 33 1 0.3682 -4.4875 4.7716 34 1 -1.3987 -3.2162 3.6206 35 1 -0.9905 -2.3002 1.3717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222474438.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:41 Heat of formation + Delta-G solvation = 25.442784 kcal Electronic energy + Delta-G solvation = -19641.970405 eV Core-core repulsion = 16605.108443 eV Total energy + Delta-G solvation = -3036.861962 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83630 -38.47892 -36.74238 -34.16779 -33.14394 -31.80036 -30.48031 -29.99352 -27.11245 -26.22011 -24.36904 -23.12414 -22.29481 -21.53299 -20.20111 -17.40225 -16.92623 -16.79282 -16.07217 -15.70456 -15.24796 -15.03419 -14.48382 -14.35197 -13.76511 -13.75605 -13.43504 -12.65234 -12.51004 -12.37945 -11.98819 -11.75330 -11.42650 -11.38711 -11.05858 -10.96888 -10.85159 -10.38557 -10.23039 -10.18191 -9.57346 -9.07547 -8.84715 -8.69846 -8.49949 -8.05124 -7.69722 -6.25329 -4.33103 0.96900 1.30521 2.28383 2.29305 3.22475 3.26818 3.30254 3.87522 3.90144 4.26738 4.40163 4.69286 4.70847 4.92273 5.09799 5.20840 5.44580 5.60169 5.65800 5.74929 5.78691 5.86181 6.01274 6.26215 6.32440 6.42140 6.53246 6.58608 6.85354 6.95504 7.05639 7.31245 7.40338 7.47442 7.62868 7.68452 7.90043 7.95082 8.03035 8.18794 8.85824 9.34947 10.79193 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.006482 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.522938 B = 4318.390106 C = 5774.562592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.071 3.929 3 Si 0.898 3.102 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.065 0.935 9 C 0.238 3.762 10 H 0.059 0.941 11 O -0.400 6.400 12 C 0.128 3.872 13 C 0.094 3.906 14 C 0.074 3.926 15 N -0.443 5.443 16 C 0.029 3.971 17 C 0.047 3.953 18 N -0.442 5.442 19 C -0.029 4.029 20 C -0.110 4.110 21 C -0.134 4.134 22 C -0.150 4.150 23 C -0.131 4.131 24 C -0.105 4.105 25 H 0.268 0.732 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.182 0.818 29 H 0.164 0.836 30 H 0.166 0.834 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 -8.671 -3.387 9.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.133 4.133 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.083 0.917 9 C 0.183 3.817 10 H 0.077 0.923 11 O -0.320 6.320 12 C 0.050 3.950 13 C -0.046 4.046 14 C -0.085 4.085 15 N -0.157 5.157 16 C -0.130 4.130 17 C -0.113 4.113 18 N -0.159 5.159 19 C -0.029 4.029 20 C -0.128 4.128 21 C -0.152 4.152 22 C -0.169 4.169 23 C -0.149 4.149 24 C -0.123 4.123 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.199 0.801 29 H 0.181 0.819 30 H 0.183 0.817 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.571 -8.670 -3.286 9.622 hybrid contribution 0.312 1.223 -0.045 1.263 sum 2.883 -7.447 -3.331 8.652 Atomic orbital electron populations 1.69878 1.05998 1.27629 1.48385 1.24993 0.94949 0.99536 0.93856 0.86543 0.79676 0.82283 0.78971 1.19964 1.21045 1.19948 1.21398 0.94131 0.89679 1.51453 0.91659 1.18849 0.92487 0.85380 0.84990 0.92335 1.87588 1.67234 1.62299 1.14883 1.20626 0.95519 0.95578 0.83299 1.22311 0.95846 0.96288 0.90122 1.23729 0.91338 0.90637 1.02846 1.68507 1.19937 1.17091 1.10200 1.23679 0.98539 0.99638 0.91164 1.23642 0.93340 0.92697 1.01602 1.68082 1.20712 1.17261 1.09817 1.20297 0.92164 0.92434 0.98046 1.20918 0.99341 0.98206 0.94334 1.20977 0.96867 1.01501 0.95841 1.20844 0.94495 1.02026 0.99488 1.20976 0.98631 0.99577 0.95698 1.21040 0.97417 0.98826 0.95063 0.92269 0.90320 0.91762 0.80147 0.81887 0.81687 0.86584 0.87494 0.87670 0.87401 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.38 12.84 55.43 0.71 -22.67 16 2 C 0.07 1.84 5.45 -17.82 -0.10 1.75 16 3 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.53 -13.71 8.62 -34.44 -0.30 -14.00 16 8 H 0.07 1.73 7.82 -52.48 -0.41 1.31 16 9 C 0.24 5.62 2.40 -29.04 -0.07 5.55 16 10 H 0.06 1.48 6.91 -51.93 -0.36 1.12 16 11 O -0.40 -8.45 7.70 -35.23 -0.27 -8.72 16 12 C 0.13 2.44 6.29 36.00 0.23 2.67 16 13 C 0.09 1.63 6.79 -82.41 -0.56 1.08 16 14 C 0.07 1.24 10.56 -17.37 -0.18 1.05 16 15 N -0.44 -6.82 10.50 -13.06 -0.14 -6.96 16 16 C 0.03 0.36 11.22 -17.38 -0.20 0.16 16 17 C 0.05 0.59 11.22 -17.38 -0.20 0.39 16 18 N -0.44 -7.11 10.42 -9.28 -0.10 -7.21 16 19 C -0.03 -0.64 4.97 -104.63 -0.52 -1.16 16 20 C -0.11 -2.25 9.36 -39.58 -0.37 -2.62 16 21 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 22 C -0.15 -2.62 10.05 -39.58 -0.40 -3.02 16 23 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 24 C -0.11 -2.26 9.67 -39.58 -0.38 -2.64 16 25 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 26 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 27 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 28 H 0.18 3.01 7.01 -52.49 -0.37 2.64 16 29 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 31 H 0.12 2.30 7.71 -52.48 -0.40 1.89 16 32 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 34 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.12 2.79 8.05 -52.48 -0.42 2.36 16 LS Contribution 311.32 15.07 4.69 4.69 Total: -1.00 -28.30 311.32 -8.01 -36.32 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.06 Total: 5.50 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -3.84 Total: -16.44 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.48 Total: -36.84 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.27 Total: -8.72 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.30 -8.01 -36.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222474438.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.759 kcal (2) G-P(sol) polarization free energy of solvation -28.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds