Wall clock time and date at job start Mon Mar 30 2020 01:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35920 * 117.00382 * 2 1 4 4 C 1.38551 * 120.06321 * 0.02562 * 3 2 1 5 5 C 1.38156 * 120.12037 * 179.97438 * 4 3 2 6 6 C 1.38812 * 120.25134 * 359.97438 * 5 4 3 7 7 O 1.35990 * 119.93890 * 180.02562 * 6 5 4 8 8 C 1.38449 * 120.12296 * 359.72420 * 6 5 4 9 9 C 1.39284 * 119.87458 * 0.55468 * 8 6 5 10 10 C 1.48347 * 120.12191 * 179.72582 * 9 8 6 11 11 C 1.39755 * 120.00494 * 129.97689 * 10 9 8 12 12 C 1.38386 * 120.37308 * 180.25263 * 11 10 9 13 13 C 1.37728 * 120.38342 * 359.74611 * 12 11 10 14 14 C 1.40759 * 119.99305 * 359.97438 * 13 12 11 15 15 C 1.41423 * 120.18437 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99810 * 334.96184 * 15 14 13 17 17 C 1.39919 * 120.00040 * 154.95991 * 15 14 13 18 18 N 1.30835 * 119.99960 * 342.55387 * 17 15 14 19 19 Si 1.86800 * 120.00079 * 162.55237 * 17 15 14 20 20 H 1.48502 * 109.47259 * 60.00320 * 19 17 15 21 21 H 1.48501 * 109.47138 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47382 * 299.99933 * 19 17 15 23 23 C 1.38756 * 120.00038 * 309.71921 * 10 9 8 24 24 H 1.09000 * 109.47259 * 300.00745 * 1 2 3 25 25 H 1.08999 * 109.46664 * 60.00367 * 1 2 3 26 26 H 1.08994 * 109.47464 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.93743 * 0.02562 * 4 3 2 28 28 H 1.08007 * 119.87686 * 180.02562 * 5 4 3 29 29 H 0.96705 * 113.99465 * 90.00612 * 7 6 5 30 30 H 1.08000 * 120.06083 * 180.29790 * 8 6 5 31 31 H 1.08000 * 119.81537 * 359.97438 * 11 10 9 32 32 H 1.08004 * 119.80870 * 179.71847 * 12 11 10 33 33 H 1.08002 * 120.00041 * 179.97438 * 13 12 11 34 34 H 0.97005 * 120.00019 * 180.02562 * 18 17 15 35 35 H 1.08009 * 120.18584 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2929 2.3739 0.0005 5 6 1.9189 3.6054 0.0011 6 6 3.3047 3.6855 0.0016 7 8 3.9144 4.9011 0.0027 8 6 4.0674 2.5300 0.0074 9 6 3.4417 1.2857 0.0010 10 6 4.2536 0.0441 0.0009 11 6 3.9812 -0.9691 0.9242 12 6 4.7371 -2.1282 0.9344 13 6 5.7631 -2.2988 0.0315 14 6 6.0474 -1.2910 -0.9092 15 6 7.0995 -1.4621 -1.8385 16 1 7.9225 -2.1221 -1.6070 17 6 7.0743 -0.7764 -3.0579 18 7 5.9550 -0.2579 -3.4939 19 14 8.6388 -0.6011 -4.0635 20 1 9.1516 -1.9484 -4.4201 21 1 8.3474 0.1623 -5.3034 22 1 9.6614 0.1226 -3.2661 23 6 5.2801 -0.1136 -0.9192 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.2143 2.3174 0.0014 28 1 1.3279 4.5095 0.0019 29 1 4.0904 5.2519 0.8864 30 1 5.1456 2.5935 0.0127 31 1 3.1791 -0.8449 1.6367 32 1 4.5216 -2.9034 1.6549 33 1 6.3493 -3.2057 0.0452 34 1 5.9374 0.2172 -4.3394 35 1 5.4909 0.6659 -1.6366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222623793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:16 Heat of formation + Delta-G solvation = -40.336624 kcal Electronic energy + Delta-G solvation = -19854.577847 eV Core-core repulsion = 16782.570725 eV Total energy + Delta-G solvation = -3072.007122 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.99069 -38.09021 -37.38364 -35.47059 -33.63801 -31.80605 -29.59239 -28.93731 -28.18687 -26.70063 -25.18995 -22.78435 -21.83944 -20.67098 -19.99590 -17.98338 -17.70748 -16.85708 -16.02654 -15.54632 -15.25182 -14.86680 -14.60568 -14.23714 -13.84970 -13.54140 -13.27264 -12.73345 -12.53370 -12.33747 -11.92391 -11.83492 -11.57092 -11.20178 -11.10458 -10.98834 -10.66401 -10.55128 -10.38695 -10.25952 -9.60215 -9.42391 -9.14458 -8.66271 -7.84306 -7.34010 -7.05450 -6.68748 -4.30514 1.51886 1.63711 2.84496 3.02122 3.10784 3.13029 3.27896 3.63145 3.97095 3.97920 4.49798 4.68052 5.02519 5.14315 5.26235 5.30749 5.54262 5.61291 5.70065 5.75387 5.97701 6.24948 6.27968 6.45536 6.54583 6.60511 6.74146 6.84483 7.02970 7.11838 7.27305 7.40508 7.56363 7.72470 7.91857 7.94080 8.07386 8.11333 8.31913 8.64848 8.93906 8.99601 10.25480 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.016507 B = 0.006384 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.880197 B = 4384.849392 C = 5330.088512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.295 6.295 3 C 0.125 3.875 4 C -0.198 4.198 5 C -0.122 4.122 6 C 0.063 3.937 7 O -0.498 6.498 8 C -0.099 4.099 9 C -0.022 4.022 10 C -0.046 4.046 11 C -0.203 4.203 12 C -0.100 4.100 13 C -0.219 4.219 14 C 0.105 3.895 15 C -0.466 4.466 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.794 5.794 19 Si 0.906 3.094 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.264 1.264 23 C -0.137 4.137 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.381 0.619 30 H 0.135 0.865 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.280 0.720 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.003 6.048 5.738 11.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.207 6.207 3 C 0.079 3.921 4 C -0.217 4.217 5 C -0.141 4.141 6 C 0.018 3.982 7 O -0.307 6.307 8 C -0.118 4.118 9 C -0.023 4.023 10 C -0.046 4.046 11 C -0.222 4.222 12 C -0.119 4.119 13 C -0.239 4.239 14 C 0.103 3.897 15 C -0.496 4.496 16 H 0.095 0.905 17 C -0.141 4.141 18 N -0.420 5.420 19 Si 0.730 3.270 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.189 1.189 23 C -0.156 4.156 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.115 0.885 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.235 0.765 30 H 0.153 0.847 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.058 5.911 4.901 11.130 hybrid contribution 0.310 0.314 -0.140 0.463 sum -7.747 6.225 4.761 11.020 Atomic orbital electron populations 1.23012 0.79708 1.03593 1.00641 1.86298 1.19989 1.26195 1.88247 1.19070 0.91690 0.84183 0.97142 1.20937 0.99589 0.91791 1.09358 1.21014 0.93742 0.97309 1.01998 1.18223 0.90186 0.84516 1.05228 1.84889 1.80536 1.32357 1.32932 1.21403 1.00625 0.90205 0.99541 1.18365 0.89457 0.93970 1.00472 1.18261 0.96542 0.91850 0.97935 1.20280 1.03209 0.95782 1.02957 1.20439 0.96703 0.96307 0.98413 1.21039 1.01621 0.99098 1.02124 1.17515 0.91467 0.89873 0.90860 1.19495 1.06285 1.23961 0.99879 0.90509 1.25878 0.96909 0.93413 0.97927 1.69821 1.26127 1.26916 1.19122 0.86409 0.82411 0.79340 0.78801 1.19075 1.20387 1.18859 1.21412 0.96805 0.98607 0.98810 0.93210 0.93079 0.88534 0.85528 0.85875 0.76528 0.84685 0.89314 0.89350 0.89052 0.90858 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.29 -5.40 8.80 -19.49 -0.17 -5.57 16 3 C 0.12 2.33 6.59 -38.90 -0.26 2.07 16 4 C -0.20 -3.03 9.03 -39.50 -0.36 -3.39 16 5 C -0.12 -1.82 9.97 -39.40 -0.39 -2.21 16 6 C 0.06 1.03 6.70 -39.29 -0.26 0.77 16 7 O -0.50 -7.19 13.50 -19.71 -0.27 -7.45 16 8 C -0.10 -1.89 9.44 -39.11 -0.37 -2.26 16 9 C -0.02 -0.46 5.48 -104.78 -0.57 -1.03 16 10 C -0.05 -1.10 5.27 -104.98 -0.55 -1.65 16 11 C -0.20 -4.70 8.78 -38.96 -0.34 -5.04 16 12 C -0.10 -2.32 10.01 -39.71 -0.40 -2.72 16 13 C -0.22 -5.49 9.79 -38.82 -0.38 -5.87 16 14 C 0.11 2.85 5.57 -106.87 -0.59 2.26 16 15 C -0.47 -12.57 9.05 -37.74 -0.34 -12.91 16 16 H 0.08 1.98 7.90 -52.48 -0.41 1.57 16 17 C 0.08 1.95 5.14 -17.35 -0.09 1.87 16 18 N -0.79 -21.16 10.97 55.55 0.61 -20.55 16 19 Si 0.91 19.09 29.59 -169.99 -5.03 14.06 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 23 C -0.14 -3.63 8.14 -38.53 -0.31 -3.94 16 24 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 25 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 26 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.13 1.54 6.29 -52.48 -0.33 1.21 16 28 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 29 H 0.38 3.46 9.06 45.56 0.41 3.87 16 30 H 0.14 2.57 8.04 -52.49 -0.42 2.15 16 31 H 0.09 1.91 7.64 -52.49 -0.40 1.51 16 32 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 33 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 35 H 0.12 3.32 6.17 -52.48 -0.32 3.00 16 LS Contribution 303.98 15.07 4.58 4.58 Total: -1.00 -30.77 303.98 -7.61 -38.38 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -3.10 Total: 9.30 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: -4.23 Total: -32.75 kcal Atomic # 7 Polarization: -21.16 SS G_CDS: 0.61 Total: -20.55 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.44 Total: -13.02 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.77 -7.61 -38.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222623793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.961 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds