Wall clock time and date at job start Mon Mar 30 2020 01:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00212 * 2 1 4 4 H 1.48500 * 109.47182 * 270.00348 * 3 2 1 5 5 H 1.48507 * 109.46918 * 29.99917 * 3 2 1 6 6 H 1.48494 * 109.47493 * 150.00177 * 3 2 1 7 7 C 1.37878 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99895 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99803 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46704 * 179.97438 * 9 7 2 11 11 O 1.42899 * 109.47418 * 59.99700 * 9 7 2 12 12 C 1.42903 * 113.99629 * 90.00093 * 11 9 7 13 13 C 1.50701 * 109.46878 * 179.97438 * 12 11 9 14 14 C 1.38618 * 120.44630 * 0.02562 * 13 12 11 15 15 C 1.38576 * 118.39672 * 180.02562 * 14 13 12 16 16 N 1.32351 * 119.10672 * 359.97438 * 15 14 13 17 17 C 1.31778 * 120.81665 * 0.02562 * 16 15 14 18 18 N 1.31810 * 121.75638 * 359.71333 * 17 16 15 19 19 C 1.50706 * 109.46765 * 299.99615 * 9 7 2 20 20 C 1.38239 * 119.99629 * 84.73576 * 19 9 7 21 21 C 1.38236 * 119.99502 * 179.80818 * 20 19 9 22 22 C 1.38243 * 120.00195 * 0.39082 * 21 20 19 23 23 C 1.38235 * 119.99854 * 359.85863 * 22 21 20 24 24 C 1.38233 * 120.00058 * 264.99856 * 19 9 7 25 25 H 0.97006 * 119.99845 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47382 * 59.99956 * 12 11 9 27 27 H 1.09001 * 109.46938 * 299.99942 * 12 11 9 28 28 H 1.08000 * 120.80692 * 0.02562 * 14 13 12 29 29 H 1.08001 * 120.44830 * 180.02562 * 15 14 13 30 30 H 1.08005 * 119.12031 * 180.02562 * 17 16 15 31 31 H 1.07996 * 120.00135 * 359.97438 * 20 19 9 32 32 H 1.07994 * 119.99876 * 180.22482 * 21 20 19 33 33 H 1.07995 * 120.00208 * 179.83233 * 22 21 20 34 34 H 1.07998 * 120.00100 * 179.97438 * 23 22 21 35 35 H 1.08005 * 120.00226 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 1.9593 -3.3276 0.0005 11 8 0.4298 -2.5751 -1.1665 12 6 1.0751 -3.1715 -2.2934 13 6 0.1224 -3.2004 -3.4607 14 6 -1.1610 -2.6925 -3.3325 15 6 -2.0019 -2.7411 -4.4329 16 7 -1.5547 -3.2669 -5.5622 17 6 -0.3278 -3.7403 -5.6471 18 7 0.5013 -3.7063 -4.6231 19 6 0.3841 -2.5786 1.2308 20 6 -0.8714 -2.0000 1.2302 21 6 -1.6680 -2.0764 2.3573 22 6 -1.2060 -2.7243 3.4878 23 6 0.0515 -3.2983 3.4900 24 6 0.8467 -3.2253 2.3616 25 1 -0.4850 0.8401 -0.0004 26 1 1.3746 -4.1894 -2.0440 27 1 1.9569 -2.5879 -2.5580 28 1 -1.4975 -2.2690 -2.3977 29 1 -3.0084 -2.3545 -4.3701 30 1 0.0089 -4.1630 -6.5823 31 1 -1.2308 -1.4908 0.3483 32 1 -2.6503 -1.6276 2.3557 33 1 -1.8273 -2.7816 4.3693 34 1 0.4127 -3.8041 4.3733 35 1 1.8291 -3.6740 2.3633 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223204494.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:35 Heat of formation + Delta-G solvation = 37.913018 kcal Electronic energy + Delta-G solvation = -20019.056714 eV Core-core repulsion = 16982.735502 eV Total energy + Delta-G solvation = -3036.321212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.61582 -38.33601 -36.56686 -33.78237 -32.85254 -31.71556 -30.42286 -29.67348 -27.22632 -26.37773 -24.01451 -22.96306 -22.17128 -21.33051 -20.19810 -17.33051 -16.81497 -16.62713 -15.75247 -15.31804 -14.88636 -14.77701 -14.58920 -14.15456 -13.72975 -13.43193 -13.33190 -13.14922 -12.55496 -12.19882 -12.01869 -11.55904 -11.15164 -10.99377 -10.95034 -10.54057 -10.42288 -10.40581 -10.12574 -9.83298 -9.33902 -9.17988 -8.94521 -8.81642 -8.25187 -7.79848 -7.49668 -6.04269 -4.37650 1.30212 1.34739 2.43204 2.58930 3.19828 3.27343 3.29993 4.03483 4.09369 4.26796 4.42495 4.90251 4.94613 5.05506 5.24293 5.44513 5.64541 5.79012 5.92030 5.95774 6.03239 6.04628 6.15117 6.27164 6.32729 6.53524 6.72159 6.74593 6.85000 7.07014 7.23650 7.35463 7.47940 7.57228 7.78022 7.95840 7.99576 8.24761 8.34584 8.41213 8.80911 9.38253 10.79780 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.015317 B = 0.006696 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.606877 B = 4180.434390 C = 5120.990141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.086 3.914 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.248 3.752 10 H 0.021 0.979 11 O -0.368 6.368 12 C 0.116 3.884 13 C 0.187 3.813 14 C -0.189 4.189 15 C 0.134 3.866 16 N -0.535 5.535 17 C 0.282 3.718 18 N -0.525 5.525 19 C -0.042 4.042 20 C -0.045 4.045 21 C -0.154 4.154 22 C -0.145 4.145 23 C -0.149 4.149 24 C -0.129 4.129 25 H 0.262 0.738 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.164 0.836 29 H 0.164 0.836 30 H 0.191 0.809 31 H 0.164 0.836 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 -4.959 -2.529 6.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.120 4.120 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.193 3.807 10 H 0.039 0.961 11 O -0.287 6.287 12 C 0.038 3.962 13 C 0.041 3.959 14 C -0.210 4.210 15 C -0.030 4.030 16 N -0.250 5.250 17 C -0.006 4.006 18 N -0.241 5.241 19 C -0.042 4.042 20 C -0.064 4.064 21 C -0.172 4.172 22 C -0.164 4.164 23 C -0.168 4.168 24 C -0.147 4.147 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.182 0.818 29 H 0.181 0.819 30 H 0.207 0.793 31 H 0.181 0.819 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.887 -5.129 -3.369 6.781 hybrid contribution 0.514 1.422 0.993 1.809 sum -2.373 -3.706 -2.376 5.001 Atomic orbital electron populations 1.69794 1.05780 1.26044 1.46589 1.24966 0.94791 0.99133 0.93140 0.86622 0.80100 0.83231 0.78240 1.20487 1.20973 1.19807 1.21441 0.93049 0.90757 1.52897 0.92006 1.18574 0.86915 0.94910 0.80342 0.96067 1.87945 1.40494 1.80924 1.19346 1.20683 0.93023 0.97428 0.85066 1.21701 0.93172 0.88578 0.92446 1.22928 0.95316 1.00508 1.02288 1.23205 0.99901 0.92082 0.87862 1.68319 1.17019 1.12052 1.27561 1.24745 0.85620 0.93333 0.96937 1.68030 1.37951 1.17800 1.00353 1.19945 0.94360 0.94548 0.95385 1.21849 0.92772 0.92408 0.99337 1.21156 0.99675 1.01634 0.94773 1.20829 0.96414 1.01263 0.97869 1.20706 0.95349 1.03028 0.97695 1.20790 0.98961 1.01157 0.93778 0.92717 0.92474 0.90898 0.81794 0.81874 0.79291 0.81877 0.88043 0.88290 0.88003 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.30 8.50 55.43 0.47 -20.83 16 2 C 0.09 2.17 5.24 -17.82 -0.09 2.08 16 3 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -13.76 8.89 -34.44 -0.31 -14.07 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.25 5.72 2.59 -29.03 -0.08 5.65 16 10 H 0.02 0.47 7.70 -51.93 -0.40 0.07 16 11 O -0.37 -8.10 7.10 -35.23 -0.25 -8.35 16 12 C 0.12 2.23 6.30 36.01 0.23 2.46 16 13 C 0.19 3.39 6.82 -82.24 -0.56 2.82 16 14 C -0.19 -3.22 9.48 -39.32 -0.37 -3.59 16 15 C 0.13 1.99 11.30 -17.20 -0.19 1.80 16 16 N -0.53 -8.22 10.44 -14.58 -0.15 -8.37 16 17 C 0.28 4.20 12.28 -92.15 -1.13 3.07 16 18 N -0.53 -8.97 10.38 -10.80 -0.11 -9.08 16 19 C -0.04 -0.95 4.80 -104.62 -0.50 -1.45 16 20 C -0.04 -1.01 7.46 -39.58 -0.30 -1.30 16 21 C -0.15 -3.09 10.05 -39.58 -0.40 -3.49 16 22 C -0.15 -2.72 10.05 -39.58 -0.40 -3.12 16 23 C -0.15 -2.81 10.05 -39.58 -0.40 -3.21 16 24 C -0.13 -2.65 9.68 -39.58 -0.38 -3.04 16 25 H 0.26 6.40 8.31 -40.82 -0.34 6.06 16 26 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 27 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.16 2.94 7.12 -52.49 -0.37 2.57 16 29 H 0.16 1.88 8.06 -52.49 -0.42 1.45 16 30 H 0.19 2.08 8.06 -52.48 -0.42 1.66 16 31 H 0.16 3.90 5.50 -52.49 -0.29 3.61 16 32 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 34 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.10 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 303.27 15.07 4.57 4.57 Total: -1.00 -27.26 303.27 -9.36 -36.63 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -3.99 Total: 5.71 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -4.88 Total: -15.39 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.21 Total: -38.28 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.25 Total: -8.35 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.26 -9.36 -36.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223204494.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.539 kcal (2) G-P(sol) polarization free energy of solvation -27.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds