Wall clock time and date at job start Mon Mar 30 2020 01:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00018 * 2 1 4 4 H 1.48502 * 109.47353 * 265.11994 * 3 2 1 5 5 H 1.48494 * 109.47472 * 25.12026 * 3 2 1 6 6 H 1.48506 * 109.47090 * 145.12290 * 3 2 1 7 7 C 1.37875 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00508 * 353.07618 * 7 2 1 9 9 C 1.50704 * 119.99838 * 173.07279 * 7 2 1 10 10 H 1.09001 * 109.46877 * 24.83261 * 9 7 2 11 11 O 1.42907 * 109.46834 * 144.82957 * 9 7 2 12 12 C 1.35669 * 116.99652 * 269.99965 * 11 9 7 13 13 C 1.38785 * 119.63800 * 180.02562 * 12 11 9 14 14 C 1.38583 * 119.27779 * 179.97438 * 13 12 11 15 15 C 1.38501 * 118.56994 * 0.25261 * 14 13 12 16 16 C 1.38984 * 119.21836 * 359.50262 * 15 14 13 17 17 N 1.38992 * 119.66505 * 180.22914 * 16 15 14 18 18 N 1.32320 * 119.64600 * 359.97438 * 12 11 9 19 19 C 1.50696 * 109.47291 * 264.82846 * 9 7 2 20 20 C 1.38230 * 120.00173 * 276.42767 * 19 9 7 21 21 C 1.38233 * 120.00260 * 179.80919 * 20 19 9 22 22 C 1.38241 * 119.99688 * 0.40263 * 21 20 19 23 23 C 1.38232 * 120.00099 * 359.85019 * 22 21 20 24 24 C 1.38234 * 119.99829 * 359.96364 * 23 22 21 25 25 H 0.97003 * 120.00385 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.35515 * 0.02562 * 13 12 11 27 27 H 1.08001 * 120.71513 * 179.97438 * 14 13 12 28 28 H 1.07995 * 120.38688 * 179.75153 * 15 14 13 29 29 H 0.97004 * 119.99634 * 180.27469 * 17 16 15 30 30 H 0.97003 * 120.00375 * 0.27944 * 17 16 15 31 31 H 1.08006 * 120.00259 * 0.02562 * 20 19 9 32 32 H 1.07999 * 120.00636 * 180.23337 * 21 20 19 33 33 H 1.08005 * 119.99921 * 179.83551 * 22 21 20 34 34 H 1.08001 * 120.00489 * 179.97438 * 23 22 21 35 35 H 1.08001 * 120.00088 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5998 1.9869 -1.3950 5 1 1.3989 2.6802 0.5943 6 1 3.4913 1.4721 0.8006 7 6 2.0044 -1.1941 0.0005 8 1 1.4704 -2.1259 0.1137 9 6 3.5032 -1.1989 -0.1569 10 1 3.9067 -0.2429 0.1770 11 8 4.0614 -2.2527 0.6307 12 6 4.4030 -1.9517 1.9087 13 6 4.9504 -2.9339 2.7223 14 6 5.2971 -2.6182 4.0263 15 6 5.0785 -1.3264 4.4756 16 6 4.5313 -0.3895 3.6070 17 7 4.3125 0.9108 4.0466 18 7 4.2117 -0.7248 2.3657 19 6 3.8554 -1.4143 -1.6062 20 6 3.9016 -2.6954 -2.1232 21 6 4.2208 -2.8928 -3.4536 22 6 4.5020 -1.8094 -4.2650 23 6 4.4610 -0.5286 -3.7467 24 6 4.1380 -0.3311 -2.4172 25 1 -0.4851 0.8400 -0.0004 26 1 5.1052 -3.9332 2.3428 27 1 5.7243 -3.3645 4.6797 28 1 5.3340 -1.0494 5.4876 29 1 3.9271 1.5675 3.4456 30 1 4.5452 1.1615 4.9543 31 1 3.6848 -3.5421 -1.4886 32 1 4.2532 -3.8935 -3.8586 33 1 4.7541 -1.9638 -5.3038 34 1 4.6811 0.3178 -4.3804 35 1 4.1063 0.6696 -2.0121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225757763.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:18 Heat of formation + Delta-G solvation = 31.737271 kcal Electronic energy + Delta-G solvation = -20170.251509 eV Core-core repulsion = 17133.662496 eV Total energy + Delta-G solvation = -3036.589013 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.91819 -38.63934 -37.07780 -34.09563 -32.88585 -31.56498 -31.07919 -30.22657 -28.36490 -27.08932 -23.52012 -22.37867 -22.32684 -21.79440 -20.18955 -17.70992 -17.20567 -17.09394 -16.14555 -15.53801 -15.40977 -14.98459 -14.58366 -14.26947 -14.00615 -13.79546 -13.02257 -12.86944 -12.81492 -12.64802 -12.53502 -11.98645 -11.75977 -11.47481 -11.09763 -10.89229 -10.40124 -10.31477 -9.89829 -9.69558 -9.47136 -8.88242 -8.71564 -8.61515 -8.25846 -7.89670 -7.22068 -6.22120 -4.24210 1.94522 1.98995 2.05079 2.08821 3.20844 3.28686 3.38241 3.78107 4.10802 4.32581 4.50696 4.52983 5.11116 5.14273 5.50273 5.52367 5.56463 5.58105 5.71271 5.77268 5.94009 6.01672 6.22502 6.27647 6.40775 6.58159 6.70333 6.73388 6.75485 6.88602 7.09901 7.16270 7.38229 7.41523 7.64953 7.68658 7.70954 8.15383 8.42490 8.77669 8.87428 9.39053 10.89362 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.007948 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.963468 B = 3522.196270 C = 4488.703906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.089 3.911 3 Si 0.858 3.142 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.239 1.239 7 C -0.516 4.516 8 H 0.081 0.919 9 C 0.209 3.791 10 H 0.070 0.930 11 O -0.304 6.304 12 C 0.399 3.601 13 C -0.266 4.266 14 C -0.008 4.008 15 C -0.299 4.299 16 C 0.439 3.561 17 N -0.856 5.856 18 N -0.577 5.577 19 C -0.040 4.040 20 C -0.102 4.102 21 C -0.124 4.124 22 C -0.145 4.145 23 C -0.121 4.121 24 C -0.128 4.128 25 H 0.267 0.733 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.121 0.879 29 H 0.401 0.599 30 H 0.404 0.596 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.124 -0.668 3.386 11.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.116 4.116 3 Si 0.685 3.315 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.163 1.163 7 C -0.552 4.552 8 H 0.099 0.901 9 C 0.155 3.845 10 H 0.087 0.913 11 O -0.210 6.210 12 C 0.218 3.782 13 C -0.289 4.289 14 C -0.033 4.033 15 C -0.324 4.324 16 C 0.201 3.799 17 N -0.399 5.399 18 N -0.311 5.311 19 C -0.041 4.041 20 C -0.121 4.121 21 C -0.142 4.142 22 C -0.163 4.163 23 C -0.139 4.139 24 C -0.146 4.146 25 H 0.077 0.923 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.139 0.861 29 H 0.231 0.769 30 H 0.233 0.767 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.606 -0.240 2.647 10.934 hybrid contribution 0.214 0.933 0.582 1.120 sum 10.819 0.693 3.229 11.312 Atomic orbital electron populations 1.69893 1.06367 1.27389 1.48307 1.24896 0.94659 0.98933 0.93112 0.87130 0.81671 0.83445 0.79234 1.19819 1.21453 1.16285 1.21046 0.88263 0.95443 1.50497 0.90123 1.19496 0.94510 0.87490 0.83015 0.91260 1.86183 1.74661 1.41405 1.18742 1.19409 0.85954 0.87244 0.85560 1.20717 1.13014 1.00323 0.94890 1.20905 0.93256 0.95155 0.93976 1.20947 1.15614 0.94883 1.00936 1.17938 0.88104 0.85767 0.88061 1.42240 1.71986 1.08993 1.16709 1.66811 1.27933 1.20863 1.15465 1.20295 0.93519 0.93189 0.97095 1.20935 0.99218 0.97136 0.94775 1.21051 1.00789 0.98221 0.94157 1.20899 1.03385 0.92941 0.99084 1.20919 1.01161 0.96769 0.95075 1.20920 1.01082 0.98399 0.94204 0.92303 0.85135 0.85242 0.86072 0.76948 0.76732 0.86027 0.86883 0.87080 0.86929 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.80 13.96 55.43 0.77 -26.03 16 2 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 3 Si 0.86 20.91 25.61 -169.99 -4.35 16.56 16 4 H -0.27 -6.43 6.43 56.52 0.36 -6.07 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.24 -5.54 6.36 56.52 0.36 -5.18 16 7 C -0.52 -14.69 9.17 -34.44 -0.32 -15.00 16 8 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.21 5.18 1.83 -29.03 -0.05 5.12 16 10 H 0.07 1.74 3.71 -51.93 -0.19 1.55 16 11 O -0.30 -7.13 8.94 -18.71 -0.17 -7.30 16 12 C 0.40 8.63 7.44 -17.14 -0.13 8.50 16 13 C -0.27 -4.70 10.03 -39.25 -0.39 -5.09 16 14 C -0.01 -0.11 10.16 -39.36 -0.40 -0.51 16 15 C -0.30 -4.48 9.93 -39.21 -0.39 -4.87 16 16 C 0.44 7.81 7.74 -155.01 -1.20 6.61 16 17 N -0.86 -12.21 9.07 31.11 0.28 -11.93 16 18 N -0.58 -12.51 8.67 -12.51 -0.11 -12.62 16 19 C -0.04 -0.92 4.98 -104.63 -0.52 -1.44 16 20 C -0.10 -2.12 9.35 -39.59 -0.37 -2.49 16 21 C -0.12 -2.18 10.05 -39.58 -0.40 -2.58 16 22 C -0.14 -2.43 10.05 -39.58 -0.40 -2.82 16 23 C -0.12 -2.19 10.05 -39.59 -0.40 -2.58 16 24 C -0.13 -2.71 9.35 -39.58 -0.37 -3.08 16 25 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.13 2.05 8.06 -52.48 -0.42 1.62 16 27 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 28 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.40 6.01 8.95 -40.82 -0.37 5.65 16 30 H 0.40 4.11 8.82 -40.82 -0.36 3.75 16 31 H 0.12 2.47 7.67 -52.48 -0.40 2.06 16 32 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 33 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 34 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 35 H 0.11 2.36 5.79 -52.49 -0.30 2.06 16 LS Contribution 301.40 15.07 4.54 4.54 Total: -1.00 -32.51 301.40 -8.26 -40.77 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -3.80 Total: 13.78 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -5.43 Total: -17.78 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.95 Total: -50.57 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.17 Total: -7.30 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.35 Total: 16.56 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.51 -8.26 -40.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225757763.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.510 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds