Wall clock time and date at job start Mon Mar 30 2020 01:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00018 * 2 1 4 4 H 1.48502 * 109.47353 * 265.11994 * 3 2 1 5 5 H 1.48494 * 109.47472 * 25.12026 * 3 2 1 6 6 H 1.48506 * 109.47090 * 145.12290 * 3 2 1 7 7 C 1.37875 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00508 * 353.07618 * 7 2 1 9 9 C 1.50704 * 119.99838 * 173.07279 * 7 2 1 10 10 H 1.09001 * 109.46877 * 24.83261 * 9 7 2 11 11 O 1.42907 * 109.46834 * 144.82957 * 9 7 2 12 12 C 1.35669 * 116.99652 * 269.99965 * 11 9 7 13 13 C 1.38785 * 119.63800 * 180.02562 * 12 11 9 14 14 C 1.38583 * 119.27779 * 179.97438 * 13 12 11 15 15 C 1.38501 * 118.56994 * 0.25261 * 14 13 12 16 16 C 1.38984 * 119.21836 * 359.50262 * 15 14 13 17 17 N 1.38992 * 119.66505 * 180.22914 * 16 15 14 18 18 N 1.32320 * 119.64600 * 359.97438 * 12 11 9 19 19 C 1.50696 * 109.47291 * 264.82846 * 9 7 2 20 20 C 1.38230 * 120.00173 * 276.42767 * 19 9 7 21 21 C 1.38233 * 120.00260 * 179.80919 * 20 19 9 22 22 C 1.38241 * 119.99688 * 0.40263 * 21 20 19 23 23 C 1.38232 * 120.00099 * 359.85019 * 22 21 20 24 24 C 1.38234 * 119.99829 * 359.96364 * 23 22 21 25 25 H 0.97003 * 120.00385 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.35515 * 0.02562 * 13 12 11 27 27 H 1.08001 * 120.71513 * 179.97438 * 14 13 12 28 28 H 1.07995 * 120.38688 * 179.75153 * 15 14 13 29 29 H 0.97004 * 119.99634 * 180.27469 * 17 16 15 30 30 H 0.97003 * 120.00375 * 0.27944 * 17 16 15 31 31 H 1.08006 * 120.00259 * 0.02562 * 20 19 9 32 32 H 1.07999 * 120.00636 * 180.23337 * 21 20 19 33 33 H 1.08005 * 119.99921 * 179.83551 * 22 21 20 34 34 H 1.08001 * 120.00489 * 179.97438 * 23 22 21 35 35 H 1.08001 * 120.00088 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5998 1.9869 -1.3950 5 1 1.3989 2.6802 0.5943 6 1 3.4913 1.4721 0.8006 7 6 2.0044 -1.1941 0.0005 8 1 1.4704 -2.1259 0.1137 9 6 3.5032 -1.1989 -0.1569 10 1 3.9067 -0.2429 0.1770 11 8 4.0614 -2.2527 0.6307 12 6 4.4030 -1.9517 1.9087 13 6 4.9504 -2.9339 2.7223 14 6 5.2971 -2.6182 4.0263 15 6 5.0785 -1.3264 4.4756 16 6 4.5313 -0.3895 3.6070 17 7 4.3125 0.9108 4.0466 18 7 4.2117 -0.7248 2.3657 19 6 3.8554 -1.4143 -1.6062 20 6 3.9016 -2.6954 -2.1232 21 6 4.2208 -2.8928 -3.4536 22 6 4.5020 -1.8094 -4.2650 23 6 4.4610 -0.5286 -3.7467 24 6 4.1380 -0.3311 -2.4172 25 1 -0.4851 0.8400 -0.0004 26 1 5.1052 -3.9332 2.3428 27 1 5.7243 -3.3645 4.6797 28 1 5.3340 -1.0494 5.4876 29 1 3.9271 1.5675 3.4456 30 1 4.5452 1.1615 4.9543 31 1 3.6848 -3.5421 -1.4886 32 1 4.2532 -3.8935 -3.8586 33 1 4.7541 -1.9638 -5.3038 34 1 4.6811 0.3178 -4.3804 35 1 4.1063 0.6696 -2.0121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225757763.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:18 Heat of formation + Delta-G solvation = 8.450535 kcal Electronic energy + Delta-G solvation = -20171.261298 eV Core-core repulsion = 17133.662496 eV Total energy + Delta-G solvation = -3037.598801 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.37706 -40.14212 -38.62195 -35.48028 -34.82214 -33.05211 -32.68694 -31.70521 -29.75914 -28.89668 -25.26709 -23.87105 -23.70328 -23.25573 -21.79534 -19.36365 -19.17382 -18.46563 -17.57067 -16.95272 -16.72270 -16.61880 -16.14629 -15.83650 -15.49086 -15.36635 -14.83265 -14.48354 -14.36758 -14.21574 -13.94412 -13.49851 -13.38575 -12.91101 -12.81938 -12.57104 -12.06335 -11.89177 -11.70411 -11.42547 -11.08840 -10.84920 -10.33069 -10.13961 -9.74476 -9.48240 -8.54206 -8.42205 -6.49088 0.54607 0.58914 0.59490 0.67371 1.23819 1.28144 1.45010 2.26459 2.40847 2.71039 2.92164 3.08219 3.13332 3.84883 4.07308 4.14914 4.23583 4.33958 4.34702 4.44626 4.55165 4.65352 4.74059 4.84391 4.87950 5.13866 5.18207 5.24190 5.34031 5.46845 5.63466 5.64956 5.67273 5.85281 6.04196 6.21299 6.34973 6.51718 6.56660 6.77229 7.19906 7.48021 8.73776 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.007948 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.963468 B = 3522.196270 C = 4488.703906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.036 3.964 3 Si 0.923 3.077 4 H -0.258 1.258 5 H -0.284 1.284 6 H -0.227 1.227 7 C -0.519 4.519 8 H 0.026 0.974 9 C 0.224 3.776 10 H 0.063 0.937 11 O -0.322 6.322 12 C 0.352 3.648 13 C -0.274 4.274 14 C 0.003 3.997 15 C -0.281 4.281 16 C 0.414 3.586 17 N -0.844 5.844 18 N -0.618 5.618 19 C -0.077 4.077 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.150 4.150 25 H 0.269 0.731 26 H 0.142 0.858 27 H 0.179 0.821 28 H 0.164 0.836 29 H 0.398 0.602 30 H 0.423 0.577 31 H 0.109 0.891 32 H 0.149 0.851 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.838 -0.294 3.287 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.164 4.164 3 Si 0.746 3.254 4 H -0.183 1.183 5 H -0.210 1.210 6 H -0.151 1.151 7 C -0.556 4.556 8 H 0.045 0.955 9 C 0.168 3.832 10 H 0.080 0.920 11 O -0.229 6.229 12 C 0.173 3.827 13 C -0.297 4.297 14 C -0.022 4.022 15 C -0.306 4.306 16 C 0.176 3.824 17 N -0.389 5.389 18 N -0.352 5.352 19 C -0.078 4.078 20 C -0.141 4.141 21 C -0.137 4.137 22 C -0.149 4.149 23 C -0.137 4.137 24 C -0.168 4.168 25 H 0.078 0.922 26 H 0.160 0.840 27 H 0.196 0.804 28 H 0.182 0.818 29 H 0.226 0.774 30 H 0.256 0.744 31 H 0.127 0.873 32 H 0.166 0.834 33 H 0.175 0.825 34 H 0.166 0.834 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.350 0.138 2.590 13.600 hybrid contribution -0.550 0.683 0.689 1.115 sum 12.800 0.821 3.279 13.239 Atomic orbital electron populations 1.70038 1.08183 1.28386 1.50817 1.25706 0.95352 1.02670 0.92665 0.86137 0.80593 0.78532 0.80137 1.18284 1.20980 1.15068 1.21131 0.90679 0.93408 1.50413 0.95517 1.19142 0.91668 0.87711 0.84644 0.91972 1.86117 1.75486 1.41055 1.20227 1.19923 0.88655 0.88764 0.85397 1.21025 1.12737 1.00070 0.95877 1.21472 0.91588 0.96155 0.92976 1.21455 1.12838 0.94203 1.02100 1.18456 0.88825 0.87498 0.87629 1.42215 1.71325 1.07750 1.17638 1.66646 1.29403 1.21409 1.17780 1.20301 0.96439 0.94890 0.96132 1.21012 1.00502 0.96082 0.96541 1.21453 0.98985 1.00590 0.92639 1.21443 1.00701 0.91809 1.00957 1.21356 0.99557 0.98844 0.93917 1.21065 1.02419 0.97547 0.95807 0.92181 0.83972 0.80389 0.81848 0.77432 0.74407 0.87281 0.83378 0.82471 0.83414 0.87717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.92 13.96 21.45 0.30 -59.62 16 2 C 0.04 2.15 5.47 84.65 0.46 2.61 16 3 Si 0.92 44.97 25.61 68.60 1.76 46.72 16 4 H -0.26 -11.84 6.43 99.48 0.64 -11.20 16 5 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.23 -10.51 6.36 99.48 0.63 -9.88 16 7 C -0.52 -31.72 9.17 25.60 0.23 -31.49 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 9 C 0.22 11.68 1.83 29.10 0.05 11.73 16 10 H 0.06 3.27 3.71 -2.39 -0.01 3.26 16 11 O -0.32 -16.09 8.94 -89.86 -0.80 -16.90 16 12 C 0.35 15.77 7.44 84.75 0.63 16.40 16 13 C -0.27 -9.58 10.03 22.48 0.23 -9.35 16 14 C 0.00 0.08 10.16 22.41 0.23 0.31 16 15 C -0.28 -7.55 9.93 22.51 0.22 -7.33 16 16 C 0.41 14.31 7.74 133.00 1.03 15.34 16 17 N -0.84 -22.88 9.07 -55.49 -0.50 -23.38 16 18 N -0.62 -27.39 8.67 -306.34 -2.66 -30.04 16 19 C -0.08 -3.63 4.98 -19.87 -0.10 -3.73 16 20 C -0.12 -5.21 9.35 22.27 0.21 -5.00 16 21 C -0.12 -3.93 10.05 22.27 0.22 -3.71 16 22 C -0.13 -3.89 10.05 22.27 0.22 -3.67 16 23 C -0.12 -3.96 10.05 22.27 0.22 -3.74 16 24 C -0.15 -6.34 9.35 22.27 0.21 -6.13 16 25 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 26 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 27 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 28 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 29 H 0.40 11.61 8.95 -92.71 -0.83 10.78 16 30 H 0.42 7.57 8.82 -92.71 -0.82 6.75 16 31 H 0.11 4.72 7.67 -2.91 -0.02 4.70 16 32 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 33 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 35 H 0.10 4.43 5.79 -2.91 -0.02 4.42 16 Total: -1.00 -78.19 301.40 1.52 -76.67 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -0.65 Total: 34.30 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 4.08 Total: -27.75 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -2.86 Total: -113.04 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.80 Total: -16.90 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.76 Total: 46.72 kcal Total: -78.19 1.52 -76.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225757763.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.121 kcal (2) G-P(sol) polarization free energy of solvation -78.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds