Wall clock time and date at job start Mon Mar 30 2020 01:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99893 * 2 1 4 4 H 1.48508 * 109.47486 * 271.49723 * 3 2 1 5 5 H 1.48503 * 109.47372 * 31.49962 * 3 2 1 6 6 H 1.48504 * 109.47109 * 151.50095 * 3 2 1 7 7 C 1.37875 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99845 * 350.28461 * 7 2 1 9 9 C 1.50694 * 120.00160 * 170.28681 * 7 2 1 10 10 H 1.09001 * 109.47244 * 354.88182 * 9 7 2 11 11 O 1.42905 * 109.47114 * 234.88372 * 9 7 2 12 12 C 1.35749 * 117.00041 * 86.68352 * 11 9 7 13 13 C 1.39494 * 120.80390 * 355.20307 * 12 11 9 14 14 C 1.37795 * 119.25934 * 180.02562 * 13 12 11 15 15 N 1.32060 * 120.91491 * 0.02562 * 14 13 12 16 16 C 1.32483 * 121.75634 * 359.97438 * 15 14 13 17 17 N 1.39025 * 119.67700 * 180.02562 * 16 15 14 18 18 C 1.38907 * 120.65262 * 359.72142 * 16 15 14 19 19 C 1.50694 * 109.47431 * 114.88305 * 9 7 2 20 20 C 1.38237 * 119.99991 * 80.86932 * 19 9 7 21 21 C 1.38237 * 120.00140 * 179.81258 * 20 19 9 22 22 C 1.38242 * 119.99776 * 0.39358 * 21 20 19 23 23 C 1.38235 * 119.99971 * 359.85621 * 22 21 20 24 24 C 1.38231 * 119.99879 * 359.95819 * 23 22 21 25 25 H 0.97001 * 120.00296 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.37223 * 0.02562 * 13 12 11 27 27 H 1.08005 * 119.54632 * 179.97438 * 14 13 12 28 28 H 0.97005 * 119.99914 * 359.97438 * 17 16 15 29 29 H 0.96998 * 120.00415 * 179.97438 * 17 16 15 30 30 H 1.07998 * 120.49149 * 180.30869 * 18 16 15 31 31 H 1.08000 * 120.00171 * 359.97438 * 20 19 9 32 32 H 1.07999 * 120.00148 * 180.22752 * 21 20 19 33 33 H 1.08002 * 119.99751 * 179.83175 * 22 21 20 34 34 H 1.08001 * 119.99737 * 179.97438 * 23 22 21 35 35 H 1.08004 * 120.00083 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4650 2.0648 -1.3996 5 1 1.4628 2.6433 0.7315 6 1 3.5622 1.4312 0.6681 7 6 2.0045 -1.1940 -0.0005 8 1 1.4761 -2.1227 0.1569 9 6 3.4953 -1.2033 -0.2207 10 1 3.8350 -0.1933 -0.4501 11 8 3.8103 -2.0710 -1.3116 12 6 3.7705 -1.5339 -2.5577 13 6 3.3398 -0.2221 -2.7567 14 6 3.3117 0.2909 -4.0353 15 7 3.6855 -0.4417 -5.0686 16 6 4.1009 -1.6913 -4.9236 17 7 4.4848 -2.4231 -6.0415 18 6 4.1627 -2.2755 -3.6649 19 6 4.1843 -1.6939 1.0265 20 6 4.2656 -3.0498 1.2833 21 6 4.9011 -3.5001 2.4254 22 6 5.4480 -2.5941 3.3148 23 6 5.3621 -1.2380 3.0606 24 6 4.7301 -0.7880 1.9166 25 1 -0.4850 0.8400 -0.0004 26 1 3.0318 0.3847 -1.9180 27 1 2.9787 1.3058 -4.1948 28 1 4.4474 -2.0185 -6.9224 29 1 4.7902 -3.3382 -5.9408 30 1 4.5066 -3.2927 -3.5491 31 1 3.8350 -3.7575 0.5903 32 1 4.9678 -4.5595 2.6242 33 1 5.9421 -2.9457 4.2085 34 1 5.7891 -0.5302 3.7557 35 1 4.6626 0.2715 1.7181 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226655224.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:28 Heat of formation + Delta-G solvation = 30.397297 kcal Electronic energy + Delta-G solvation = -20048.172575 eV Core-core repulsion = 17011.525457 eV Total energy + Delta-G solvation = -3036.647118 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.93252 -38.76076 -37.33978 -34.09049 -33.23636 -31.64823 -30.41378 -30.10344 -28.85326 -27.34164 -23.49250 -22.93177 -22.16399 -21.72970 -20.16624 -17.80280 -17.44503 -17.13351 -16.28689 -15.80538 -15.17891 -14.80538 -14.60472 -14.17080 -13.98320 -13.94543 -13.45127 -13.09513 -12.92767 -12.86091 -12.72068 -12.20210 -12.06020 -11.37550 -11.09189 -10.68528 -10.44334 -10.36014 -10.04024 -9.91961 -9.55583 -9.00336 -8.91761 -8.36413 -8.17088 -7.86660 -7.47832 -6.44423 -4.47456 1.86485 1.93847 1.97932 2.20819 2.99638 3.06400 3.12783 3.70171 4.04514 4.12647 4.44287 4.51479 4.93253 5.22365 5.41382 5.43870 5.53770 5.65288 5.74463 5.81647 5.89073 6.00984 6.10227 6.20583 6.29921 6.40213 6.54917 6.63539 6.82748 6.98860 7.00886 7.10144 7.16852 7.30487 7.57590 7.60937 7.77727 8.03468 8.27737 8.69570 8.72802 9.14660 10.66978 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.015779 B = 0.007507 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.059308 B = 3729.090232 C = 4864.475587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.088 3.912 3 Si 0.851 3.149 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.530 4.530 8 H 0.087 0.913 9 C 0.207 3.793 10 H 0.049 0.951 11 O -0.313 6.313 12 C 0.242 3.758 13 C -0.304 4.304 14 C 0.169 3.831 15 N -0.578 5.578 16 C 0.421 3.579 17 N -0.857 5.857 18 C -0.292 4.292 19 C -0.037 4.037 20 C -0.101 4.101 21 C -0.125 4.125 22 C -0.142 4.142 23 C -0.122 4.122 24 C -0.127 4.127 25 H 0.272 0.728 26 H 0.139 0.861 27 H 0.149 0.851 28 H 0.399 0.601 29 H 0.404 0.596 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.947 -2.274 -2.508 10.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.119 4.119 3 Si 0.678 3.322 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.567 4.567 8 H 0.105 0.895 9 C 0.154 3.846 10 H 0.066 0.934 11 O -0.224 6.224 12 C 0.186 3.814 13 C -0.328 4.328 14 C 0.014 3.986 15 N -0.301 5.301 16 C 0.186 3.814 17 N -0.401 5.401 18 C -0.318 4.318 19 C -0.037 4.037 20 C -0.119 4.119 21 C -0.143 4.143 22 C -0.161 4.161 23 C -0.140 4.140 24 C -0.145 4.145 25 H 0.082 0.918 26 H 0.156 0.844 27 H 0.166 0.834 28 H 0.228 0.772 29 H 0.233 0.767 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.762 -2.003 -3.141 10.449 hybrid contribution 0.119 0.550 0.774 0.957 sum 9.882 -1.453 -2.367 10.265 Atomic orbital electron populations 1.69877 1.06250 1.27793 1.46055 1.25044 0.94791 0.98821 0.93230 0.87434 0.81082 0.84260 0.79460 1.18485 1.20379 1.17926 1.21135 0.88611 0.96035 1.50908 0.89510 1.19481 0.95699 0.89192 0.80250 0.93377 1.86048 1.81982 1.42110 1.12210 1.18869 0.86678 0.90323 0.85562 1.22299 1.12694 0.97647 1.00129 1.22000 0.91518 0.98016 0.87089 1.67133 1.22044 1.05927 1.35031 1.17901 0.89235 0.88296 0.86003 1.42037 1.75403 1.16039 1.06670 1.20393 1.18534 1.02670 0.90173 1.19987 0.93466 0.93645 0.96650 1.20958 0.98523 0.95511 0.96923 1.21062 0.99256 0.98982 0.94972 1.20937 1.02109 0.93443 0.99573 1.20944 1.00299 0.95556 0.97207 1.21027 0.98796 0.99554 0.95118 0.91766 0.84405 0.83381 0.77210 0.76708 0.85348 0.85969 0.86809 0.86998 0.86786 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.77 13.96 55.43 0.77 -24.00 16 2 C 0.09 2.37 5.28 -17.82 -0.09 2.28 16 3 Si 0.85 19.34 24.75 -169.99 -4.21 15.13 16 4 H -0.26 -5.57 6.43 56.52 0.36 -5.21 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.25 -5.39 4.90 56.52 0.28 -5.11 16 7 C -0.53 -14.29 8.77 -34.44 -0.30 -14.60 16 8 H 0.09 2.60 8.06 -52.48 -0.42 2.17 16 9 C 0.21 4.87 1.85 -29.04 -0.05 4.81 16 10 H 0.05 1.12 3.51 -51.93 -0.18 0.94 16 11 O -0.31 -7.18 9.09 -18.96 -0.17 -7.35 16 12 C 0.24 5.25 6.65 -38.86 -0.26 4.99 16 13 C -0.30 -6.61 8.83 -39.28 -0.35 -6.96 16 14 C 0.17 3.28 11.17 -17.62 -0.20 3.08 16 15 N -0.58 -10.86 10.39 -12.51 -0.13 -10.99 16 16 C 0.42 7.31 7.74 -155.01 -1.20 6.11 16 17 N -0.86 -10.59 9.07 31.10 0.28 -10.31 16 18 C -0.29 -5.45 9.90 -39.08 -0.39 -5.84 16 19 C -0.04 -0.79 4.96 -104.63 -0.52 -1.31 16 20 C -0.10 -1.98 9.36 -39.58 -0.37 -2.35 16 21 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 22 C -0.14 -2.22 10.05 -39.58 -0.40 -2.62 16 23 C -0.12 -2.02 10.05 -39.58 -0.40 -2.42 16 24 C -0.13 -2.48 9.67 -39.58 -0.38 -2.86 16 25 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.14 3.15 1.79 -52.49 -0.09 3.06 16 27 H 0.15 2.48 8.06 -52.48 -0.42 2.05 16 28 H 0.40 4.29 8.95 -40.82 -0.37 3.93 16 29 H 0.40 3.87 8.82 -40.82 -0.36 3.51 16 30 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 31 H 0.12 2.39 7.75 -52.49 -0.41 1.98 16 32 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.12 2.26 6.21 -52.48 -0.33 1.94 16 LS Contribution 293.69 15.07 4.43 4.43 Total: -1.00 -30.16 293.69 -7.90 -38.06 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -3.57 Total: 15.17 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -5.30 Total: -20.14 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.93 Total: -45.29 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.17 Total: -7.35 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.21 Total: 15.13 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.16 -7.90 -38.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226655224.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.456 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds