Wall clock time and date at job start Mon Mar 30 2020 01:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48506 * 109.47050 * 270.00399 * 3 2 1 5 5 H 1.48498 * 109.46966 * 30.00026 * 3 2 1 6 6 H 1.48494 * 109.47213 * 150.00501 * 3 2 1 7 7 C 1.37876 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99986 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99656 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.46959 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99876 * 180.02562 * 10 9 7 12 12 O 1.21583 * 120.00144 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99585 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72218 * 13 11 10 15 15 C 1.53004 * 109.47198 * 180.27868 * 14 13 11 16 16 H 1.09001 * 110.85736 * 305.70133 * 15 14 13 17 17 C 1.54740 * 110.97779 * 181.89727 * 15 14 13 18 18 C 1.51692 * 102.54628 * 266.10175 * 17 15 14 19 19 C 1.47589 * 125.86020 * 164.58203 * 18 17 15 20 20 N 1.34782 * 119.99955 * 179.97438 * 19 18 17 21 21 O 1.21549 * 120.00310 * 359.97438 * 19 18 17 22 22 N 1.29017 * 108.27531 * 344.60705 * 18 17 15 23 23 O 1.41482 * 112.90233 * 359.68012 * 22 18 17 24 24 H 0.97006 * 120.00538 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46948 * 60.00523 * 9 7 2 26 26 H 1.08994 * 109.47551 * 299.99811 * 9 7 2 27 27 H 0.97000 * 119.99601 * 359.97438 * 10 9 7 28 28 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 29 29 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 30 30 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 31 31 H 1.09003 * 110.79142 * 24.35739 * 17 15 14 32 32 H 1.08990 * 110.79354 * 147.83397 * 17 15 14 33 33 H 0.97001 * 119.99475 * 359.97438 * 20 19 18 34 34 H 0.96996 * 119.99999 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5753 -0.0022 11 6 5.3249 -2.8215 -0.0024 12 8 6.1150 -1.8974 -0.0021 13 7 5.7741 -4.0922 -0.0029 14 6 7.2144 -4.3599 -0.0092 15 6 7.4523 -5.8713 -0.0155 16 1 6.9285 -6.3500 0.8120 17 6 8.9650 -6.1942 0.0256 18 6 9.3090 -6.3486 -1.4437 19 6 10.6685 -6.3465 -2.0183 20 7 10.8387 -6.4939 -3.3472 21 8 11.6346 -6.2120 -1.2931 22 7 8.2092 -6.4815 -2.1049 23 8 7.0620 -6.4501 -1.2774 24 1 -0.4851 0.8400 0.0004 25 1 3.8751 -0.6804 0.8889 26 1 3.8745 -0.6800 -0.8911 27 1 3.3695 -3.3125 -0.0021 28 1 5.1438 -4.8295 -0.0035 29 1 7.6623 -3.9180 -0.8994 30 1 7.6689 -3.9243 0.8806 31 1 9.5246 -5.3708 0.4694 32 1 9.1479 -7.1232 0.5655 33 1 10.0677 -6.6016 -3.9258 34 1 11.7321 -6.4929 -3.7248 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227412464.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:17 Heat of formation + Delta-G solvation = -44.413080 kcal Electronic energy + Delta-G solvation = -19806.395806 eV Core-core repulsion = 16355.655403 eV Total energy + Delta-G solvation = -3450.740403 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.12421 -39.64452 -39.13072 -35.09989 -34.44725 -34.08880 -33.19914 -32.37750 -31.32254 -28.12676 -26.24166 -24.88514 -22.48135 -21.92022 -20.42857 -20.27532 -18.44201 -18.17290 -17.34605 -17.15800 -16.39471 -16.18928 -15.69804 -15.37663 -14.94607 -14.81117 -14.46627 -14.11224 -13.75210 -13.40614 -13.08533 -12.97972 -12.47464 -12.31540 -12.20709 -12.01049 -11.46645 -10.99943 -10.97816 -10.75161 -10.37119 -10.08750 -9.95841 -9.64093 -9.45015 -8.95343 -8.74664 -8.02844 -6.19561 -4.21456 0.44722 2.18482 2.49140 2.81785 3.10914 3.29120 3.36021 3.44519 3.70332 3.80086 3.99821 4.03994 4.19641 4.35551 4.67205 4.86609 4.94266 5.05525 5.16013 5.19194 5.47178 5.61491 6.06418 6.40980 6.63503 6.72715 6.74179 7.12434 7.23430 7.39987 7.49755 7.54671 8.28742 8.68495 8.81757 9.18044 9.41613 10.92423 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.039616 B = 0.003101 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.624198 B = 9027.227776 C = 9243.315535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.721 5.721 11 C 0.696 3.304 12 O -0.604 6.604 13 N -0.751 5.751 14 C 0.129 3.871 15 C 0.029 3.971 16 H 0.133 0.867 17 C -0.124 4.124 18 C 0.042 3.958 19 C 0.599 3.401 20 N -0.832 5.832 21 O -0.517 6.517 22 N -0.237 5.237 23 O -0.170 6.170 24 H 0.267 0.733 25 H 0.023 0.977 26 H 0.018 0.982 27 H 0.393 0.607 28 H 0.397 0.603 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.412 0.588 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.230 -16.657 -2.989 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.373 5.373 11 C 0.396 3.604 12 O -0.484 6.484 13 N -0.409 5.409 14 C 0.004 3.996 15 C -0.029 4.029 16 H 0.150 0.850 17 C -0.164 4.164 18 C -0.153 4.153 19 C 0.380 3.620 20 N -0.397 5.397 21 O -0.389 6.389 22 N 0.019 4.981 23 O -0.192 6.192 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.227 0.773 28 H 0.231 0.769 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.242 0.758 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 19.650 -15.729 -3.383 25.396 hybrid contribution -0.102 0.298 0.334 0.460 sum 19.548 -15.431 -3.048 25.090 Atomic orbital electron populations 1.69880 1.06211 1.27412 1.49569 1.24781 0.94787 0.99164 0.93902 0.86809 0.80589 0.83184 0.79063 1.19854 1.20935 1.18445 1.21094 0.88541 0.95215 1.53171 0.90263 1.19369 0.94849 0.77573 0.96653 1.45384 1.03621 1.11132 1.77143 1.16074 0.83656 0.82476 0.78232 1.90867 1.55430 1.43174 1.58924 1.44919 1.06667 1.06977 1.82350 1.21451 0.82645 0.92209 1.03343 1.24186 0.94701 0.95226 0.88827 0.84958 1.22819 0.94513 1.06372 0.92703 1.25877 0.93895 0.99343 0.96225 1.16839 0.85591 0.76746 0.82800 1.43679 1.13743 1.74896 1.07419 1.90914 1.39688 1.48470 1.59873 1.78352 0.94240 1.06942 1.18581 1.91358 1.23742 1.80056 1.24044 0.92273 0.95874 0.96369 0.77348 0.76934 0.91482 0.89883 0.86384 0.86601 0.75802 0.75442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.54 -15.03 9.83 -34.44 -0.34 -15.37 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.24 5.98 4.50 -5.19 -0.02 5.96 16 10 N -0.72 -14.99 5.55 -66.41 -0.37 -15.36 16 11 C 0.70 13.81 8.57 -86.92 -0.74 13.07 16 12 O -0.60 -14.41 16.34 5.29 0.09 -14.33 16 13 N -0.75 -10.66 5.56 -65.22 -0.36 -11.02 16 14 C 0.13 1.52 5.37 -4.04 -0.02 1.50 16 15 C 0.03 0.25 3.84 -25.81 -0.10 0.15 16 16 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 17 C -0.12 -0.87 6.45 -26.48 -0.17 -1.04 16 18 C 0.04 0.36 7.29 -79.47 -0.58 -0.22 16 19 C 0.60 5.07 8.09 -12.44 -0.10 4.97 16 20 N -0.83 -4.23 8.87 30.47 0.27 -3.96 16 21 O -0.52 -5.90 17.79 5.32 0.09 -5.81 16 22 N -0.24 -2.37 12.15 35.28 0.43 -1.94 16 23 O -0.17 -1.83 12.24 -11.41 -0.14 -1.97 16 24 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 26 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 27 H 0.39 7.16 8.34 -40.82 -0.34 6.82 16 28 H 0.40 4.58 8.49 -40.82 -0.35 4.23 16 29 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.12 0.77 7.91 -51.93 -0.41 0.35 16 32 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.41 1.60 8.51 -40.82 -0.35 1.26 16 34 H 0.41 1.32 8.93 -40.82 -0.36 0.96 16 LS Contribution 305.74 15.07 4.61 4.61 Total: -1.00 -36.52 305.74 -5.30 -41.82 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -3.85 Total: 5.77 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: -2.17 Total: 11.12 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.74 Total: -58.20 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.04 Total: -22.10 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -36.52 -5.30 -41.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227412464.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.590 kcal (2) G-P(sol) polarization free energy of solvation -36.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds