Wall clock time and date at job start Mon Mar 30 2020 01:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99697 * 2 1 4 4 H 1.48494 * 109.47531 * 84.98799 * 3 2 1 5 5 H 1.48503 * 109.46786 * 204.98600 * 3 2 1 6 6 H 1.48498 * 109.47314 * 324.98285 * 3 2 1 7 7 C 1.37878 * 120.00026 * 180.26835 * 2 1 3 8 8 H 1.07996 * 119.99986 * 5.08363 * 7 2 1 9 9 C 1.50703 * 119.99491 * 185.08022 * 7 2 1 10 10 H 1.08990 * 109.47449 * 5.60733 * 9 7 2 11 11 O 1.42908 * 109.46706 * 125.60358 * 9 7 2 12 12 C 1.35978 * 116.99807 * 274.92719 * 11 9 7 13 13 C 1.38702 * 119.99814 * 184.85934 * 12 11 9 14 14 C 1.38139 * 119.99656 * 179.76547 * 13 12 11 15 15 C 1.38698 * 119.99990 * 0.50162 * 14 13 12 16 16 O 1.35981 * 119.99719 * 179.72517 * 15 14 13 17 17 C 1.38689 * 119.99935 * 359.75373 * 15 14 13 18 18 C 1.38129 * 120.00423 * 359.97438 * 17 15 14 19 19 C 1.50698 * 109.47083 * 245.59816 * 9 7 2 20 20 C 1.38242 * 120.00320 * 274.81018 * 19 9 7 21 21 C 1.38231 * 120.00266 * 179.78815 * 20 19 9 22 22 C 1.38243 * 119.99844 * 0.43966 * 21 20 19 23 23 C 1.38241 * 119.99506 * 359.81048 * 22 21 20 24 24 C 1.38227 * 120.00591 * 359.97438 * 23 22 21 25 25 H 0.96999 * 120.00092 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00170 * 359.97438 * 13 12 11 27 27 H 1.07999 * 119.99805 * 180.22907 * 14 13 12 28 28 H 0.96703 * 114.00211 * 270.02441 * 16 15 14 29 29 H 1.08005 * 120.00128 * 179.97438 * 17 15 14 30 30 H 1.08000 * 120.00391 * 179.97438 * 18 17 15 31 31 H 1.08007 * 119.99481 * 359.97438 * 20 19 9 32 32 H 1.07999 * 120.00390 * 180.27421 * 21 20 19 33 33 H 1.07994 * 120.00204 * 179.83700 * 22 21 20 34 34 H 1.07999 * 119.99257 * 180.02562 * 23 22 21 35 35 H 1.07994 * 120.00099 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3907 2.1077 1.3946 5 1 3.5956 1.4119 -0.5914 6 1 1.5035 2.6198 -0.8034 7 6 2.0046 -1.1940 -0.0056 8 1 1.4678 -2.1271 -0.0928 9 6 3.5071 -1.1970 0.1100 10 1 3.8599 -0.1812 0.2879 11 8 3.8994 -2.0350 1.1991 12 6 3.9132 -1.4725 2.4369 13 6 4.3798 -2.1979 3.5232 14 6 4.3983 -1.6247 4.7799 15 6 3.9407 -0.3274 4.9572 16 8 3.9538 0.2348 6.1953 17 6 3.4693 0.3960 3.8719 18 6 3.4560 -0.1751 2.6143 19 6 4.1083 -1.7209 -1.1688 20 6 4.2561 -3.0826 -1.3560 21 6 4.8035 -3.5634 -2.5307 22 6 5.2114 -2.6821 -3.5146 23 6 5.0682 -1.3203 -3.3252 24 6 4.5168 -0.8397 -2.1523 25 1 -0.4850 0.8400 -0.0004 26 1 4.7316 -3.2097 3.3859 27 1 4.7650 -2.1883 5.6250 28 1 3.1431 0.0895 6.7019 29 1 3.1126 1.4061 4.0101 30 1 3.0885 0.3882 1.7693 31 1 3.9412 -3.7709 -0.5855 32 1 4.9150 -4.6274 -2.6788 33 1 5.6415 -3.0576 -4.4314 34 1 5.3865 -0.6318 -4.0941 35 1 4.4054 0.2242 -2.0043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227445521.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:40 Heat of formation + Delta-G solvation = -23.127797 kcal Electronic energy + Delta-G solvation = -20025.071304 eV Core-core repulsion = 16953.810413 eV Total energy + Delta-G solvation = -3071.260892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.74970 -38.69870 -37.59582 -35.36016 -33.15430 -31.39375 -30.59444 -30.32683 -28.17451 -27.38435 -23.37778 -22.50197 -22.12618 -21.53950 -20.13035 -18.23127 -17.42914 -17.19956 -16.50669 -15.48034 -15.21411 -14.92799 -14.39755 -14.20337 -13.90855 -13.50788 -13.26496 -13.01664 -12.96894 -12.87114 -12.28870 -12.17366 -11.90374 -11.54616 -11.15675 -10.99223 -10.84655 -10.56673 -10.11992 -9.93899 -9.75630 -9.45151 -8.95933 -8.59773 -8.35702 -8.03585 -7.34981 -6.45934 -4.49541 1.75652 1.83160 1.95306 1.98746 2.95714 3.01698 3.09441 4.00419 4.02428 4.11359 4.43706 4.64897 4.91981 5.30809 5.33486 5.42274 5.44981 5.58207 5.73987 5.84364 5.91519 6.00070 6.09572 6.19248 6.23896 6.39930 6.54153 6.55628 6.65884 6.85305 6.90924 7.01009 7.04370 7.14600 7.16238 7.32689 7.58417 7.93675 8.05662 8.30884 8.68608 9.12665 10.65731 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.017430 B = 0.007081 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.045768 B = 3953.363059 C = 4930.233889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.086 3.914 3 Si 0.848 3.152 4 H -0.262 1.262 5 H -0.253 1.253 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.088 0.912 9 C 0.203 3.797 10 H 0.049 0.951 11 O -0.318 6.318 12 C 0.164 3.836 13 C -0.157 4.157 14 C -0.108 4.108 15 C 0.039 3.961 16 O -0.502 6.502 17 C -0.104 4.104 18 C -0.190 4.190 19 C -0.035 4.035 20 C -0.103 4.103 21 C -0.124 4.124 22 C -0.143 4.143 23 C -0.122 4.122 24 C -0.125 4.125 25 H 0.272 0.728 26 H 0.129 0.871 27 H 0.126 0.874 28 H 0.379 0.621 29 H 0.121 0.879 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.132 -1.500 2.477 8.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.120 4.120 3 Si 0.675 3.325 4 H -0.188 1.188 5 H -0.178 1.178 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.106 0.894 9 C 0.149 3.851 10 H 0.067 0.933 11 O -0.231 6.231 12 C 0.117 3.883 13 C -0.176 4.176 14 C -0.126 4.126 15 C -0.005 4.005 16 O -0.310 6.310 17 C -0.123 4.123 18 C -0.208 4.208 19 C -0.036 4.036 20 C -0.121 4.121 21 C -0.142 4.142 22 C -0.161 4.161 23 C -0.140 4.140 24 C -0.143 4.143 25 H 0.082 0.918 26 H 0.147 0.853 27 H 0.144 0.856 28 H 0.232 0.768 29 H 0.139 0.861 30 H 0.152 0.848 31 H 0.141 0.859 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.557 -1.398 2.218 8.950 hybrid contribution -0.503 1.060 -0.007 1.173 sum 8.054 -0.338 2.212 8.359 Atomic orbital electron populations 1.69852 1.06114 1.27650 1.46734 1.25048 0.94830 0.98625 0.93477 0.87460 0.81126 0.84584 0.79334 1.18797 1.17825 1.20268 1.21192 0.87877 0.95779 1.51657 0.89405 1.19555 0.95401 0.89788 0.80335 0.93343 1.86068 1.81699 1.42239 1.13111 1.18973 0.92193 0.91018 0.86144 1.20279 1.06049 1.00704 0.90539 1.21032 1.00611 0.94023 0.96940 1.18190 1.05340 0.92338 0.84665 1.84852 1.42569 1.77489 1.26110 1.21164 0.98796 0.99995 0.92315 1.21536 1.04596 0.96240 0.98440 1.19973 0.93638 0.93733 0.96214 1.20962 0.98733 0.95294 0.97129 1.21061 0.99952 0.99008 0.94208 1.20936 1.02600 0.93521 0.99059 1.20942 1.00489 0.95424 0.97115 1.20952 0.99645 0.99553 0.94160 0.91795 0.85289 0.85598 0.76767 0.86088 0.84785 0.85901 0.86812 0.86999 0.86785 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.81 13.96 55.43 0.77 -24.03 16 2 C 0.09 2.32 5.28 -17.82 -0.09 2.23 16 3 Si 0.85 19.48 24.64 -169.99 -4.19 15.29 16 4 H -0.26 -5.79 6.68 56.52 0.38 -5.41 16 5 H -0.25 -5.44 4.92 56.52 0.28 -5.16 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.19 8.68 -34.44 -0.30 -14.49 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 9 C 0.20 4.77 1.91 -29.03 -0.06 4.71 16 10 H 0.05 1.14 3.39 -51.93 -0.18 0.96 16 11 O -0.32 -7.20 8.93 -19.67 -0.18 -7.37 16 12 C 0.16 3.47 6.60 -39.24 -0.26 3.22 16 13 C -0.16 -2.79 9.98 -39.45 -0.39 -3.18 16 14 C -0.11 -1.73 9.98 -39.45 -0.39 -2.12 16 15 C 0.04 0.66 6.70 -39.24 -0.26 0.39 16 16 O -0.50 -7.30 13.50 -19.68 -0.27 -7.56 16 17 C -0.10 -1.97 9.98 -39.45 -0.39 -2.37 16 18 C -0.19 -4.08 8.71 -39.45 -0.34 -4.43 16 19 C -0.04 -0.75 4.99 -104.62 -0.52 -1.28 16 20 C -0.10 -2.01 9.35 -39.58 -0.37 -2.38 16 21 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 22 C -0.14 -2.24 10.05 -39.58 -0.40 -2.64 16 23 C -0.12 -2.03 10.05 -39.58 -0.40 -2.43 16 24 C -0.12 -2.46 9.68 -39.59 -0.38 -2.84 16 25 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 27 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.38 3.68 9.06 45.56 0.41 4.09 16 29 H 0.12 2.12 8.06 -52.48 -0.42 1.70 16 30 H 0.13 3.08 1.38 -52.49 -0.07 3.01 16 31 H 0.12 2.38 7.62 -52.48 -0.40 1.98 16 32 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.12 2.25 6.61 -52.49 -0.35 1.90 16 LS Contribution 294.50 15.07 4.44 4.44 Total: -1.00 -29.81 294.50 -7.21 -37.02 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -2.82 Total: 12.28 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -4.96 Total: -30.06 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.77 Total: -24.03 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.44 Total: -14.93 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.19 Total: 15.29 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.81 -7.21 -37.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227445521.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.891 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds