Wall clock time and date at job start Mon Mar 30 2020 01:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99697 * 2 1 4 4 H 1.48494 * 109.47531 * 84.98799 * 3 2 1 5 5 H 1.48503 * 109.46786 * 204.98600 * 3 2 1 6 6 H 1.48498 * 109.47314 * 324.98285 * 3 2 1 7 7 C 1.37878 * 120.00026 * 180.26835 * 2 1 3 8 8 H 1.07996 * 119.99986 * 5.08363 * 7 2 1 9 9 C 1.50703 * 119.99491 * 185.08022 * 7 2 1 10 10 H 1.08990 * 109.47449 * 5.60733 * 9 7 2 11 11 O 1.42908 * 109.46706 * 125.60358 * 9 7 2 12 12 C 1.35978 * 116.99807 * 274.92719 * 11 9 7 13 13 C 1.38702 * 119.99814 * 184.85934 * 12 11 9 14 14 C 1.38139 * 119.99656 * 179.76547 * 13 12 11 15 15 C 1.38698 * 119.99990 * 0.50162 * 14 13 12 16 16 O 1.35981 * 119.99719 * 179.72517 * 15 14 13 17 17 C 1.38689 * 119.99935 * 359.75373 * 15 14 13 18 18 C 1.38129 * 120.00423 * 359.97438 * 17 15 14 19 19 C 1.50698 * 109.47083 * 245.59816 * 9 7 2 20 20 C 1.38242 * 120.00320 * 274.81018 * 19 9 7 21 21 C 1.38231 * 120.00266 * 179.78815 * 20 19 9 22 22 C 1.38243 * 119.99844 * 0.43966 * 21 20 19 23 23 C 1.38241 * 119.99506 * 359.81048 * 22 21 20 24 24 C 1.38227 * 120.00591 * 359.97438 * 23 22 21 25 25 H 0.96999 * 120.00092 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00170 * 359.97438 * 13 12 11 27 27 H 1.07999 * 119.99805 * 180.22907 * 14 13 12 28 28 H 0.96703 * 114.00211 * 270.02441 * 16 15 14 29 29 H 1.08005 * 120.00128 * 179.97438 * 17 15 14 30 30 H 1.08000 * 120.00391 * 179.97438 * 18 17 15 31 31 H 1.08007 * 119.99481 * 359.97438 * 20 19 9 32 32 H 1.07999 * 120.00390 * 180.27421 * 21 20 19 33 33 H 1.07994 * 120.00204 * 179.83700 * 22 21 20 34 34 H 1.07999 * 119.99257 * 180.02562 * 23 22 21 35 35 H 1.07994 * 120.00099 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3907 2.1077 1.3946 5 1 3.5956 1.4119 -0.5914 6 1 1.5035 2.6198 -0.8034 7 6 2.0046 -1.1940 -0.0056 8 1 1.4678 -2.1271 -0.0928 9 6 3.5071 -1.1970 0.1100 10 1 3.8599 -0.1812 0.2879 11 8 3.8994 -2.0350 1.1991 12 6 3.9132 -1.4725 2.4369 13 6 4.3798 -2.1979 3.5232 14 6 4.3983 -1.6247 4.7799 15 6 3.9407 -0.3274 4.9572 16 8 3.9538 0.2348 6.1953 17 6 3.4693 0.3960 3.8719 18 6 3.4560 -0.1751 2.6143 19 6 4.1083 -1.7209 -1.1688 20 6 4.2561 -3.0826 -1.3560 21 6 4.8035 -3.5634 -2.5307 22 6 5.2114 -2.6821 -3.5146 23 6 5.0682 -1.3203 -3.3252 24 6 4.5168 -0.8397 -2.1523 25 1 -0.4850 0.8400 -0.0004 26 1 4.7316 -3.2097 3.3859 27 1 4.7650 -2.1883 5.6250 28 1 3.1431 0.0895 6.7019 29 1 3.1126 1.4061 4.0101 30 1 3.0885 0.3882 1.7693 31 1 3.9412 -3.7709 -0.5855 32 1 4.9150 -4.6274 -2.6788 33 1 5.6415 -3.0576 -4.4314 34 1 5.3865 -0.6318 -4.0941 35 1 4.4054 0.2242 -2.0043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227445521.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:39 Heat of formation + Delta-G solvation = -42.934799 kcal Electronic energy + Delta-G solvation = -20025.930200 eV Core-core repulsion = 16953.810413 eV Total energy + Delta-G solvation = -3072.119788 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.27360 -40.09700 -39.01289 -36.75698 -35.10042 -33.02580 -32.02296 -31.70940 -29.62377 -29.14835 -25.15487 -23.93329 -23.54225 -22.95161 -21.66612 -19.78369 -19.15728 -18.82376 -17.93432 -16.99055 -16.73606 -16.33214 -15.94831 -15.62160 -15.43788 -15.12300 -14.93671 -14.65911 -14.50142 -14.26671 -13.79311 -13.63072 -13.39630 -13.10472 -12.76703 -12.48518 -12.39979 -12.04797 -11.90391 -11.52845 -11.33033 -11.18566 -10.91943 -10.03481 -9.74302 -9.51164 -8.87551 -8.53116 -6.61771 0.31551 0.39783 0.54354 0.59095 1.12949 1.15663 1.23467 2.07101 2.40808 2.68953 2.92549 3.03256 3.38091 3.88768 3.93897 4.03109 4.17272 4.22027 4.31554 4.35005 4.39935 4.52756 4.68965 4.78605 4.83350 5.00223 5.12266 5.16596 5.22328 5.25777 5.43474 5.47087 5.64884 5.67861 5.71737 5.85304 6.00748 6.21305 6.42364 6.65569 6.91068 7.06988 8.63098 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.017430 B = 0.007081 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.045768 B = 3953.363059 C = 4930.233889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.041 3.959 3 Si 0.901 3.099 4 H -0.251 1.251 5 H -0.235 1.235 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.038 0.962 9 C 0.214 3.786 10 H 0.046 0.954 11 O -0.329 6.329 12 C 0.124 3.876 13 C -0.151 4.151 14 C -0.097 4.097 15 C 0.056 3.944 16 O -0.501 6.501 17 C -0.119 4.119 18 C -0.218 4.218 19 C -0.072 4.072 20 C -0.123 4.123 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.118 4.118 24 C -0.145 4.145 25 H 0.274 0.726 26 H 0.150 0.850 27 H 0.167 0.833 28 H 0.405 0.595 29 H 0.130 0.870 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.147 0.853 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.711 -1.622 2.634 11.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.161 4.161 3 Si 0.724 3.276 4 H -0.176 1.176 5 H -0.158 1.158 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.056 0.944 9 C 0.159 3.841 10 H 0.063 0.937 11 O -0.243 6.243 12 C 0.078 3.922 13 C -0.170 4.170 14 C -0.115 4.115 15 C 0.011 3.989 16 O -0.313 6.313 17 C -0.137 4.137 18 C -0.237 4.237 19 C -0.073 4.073 20 C -0.141 4.141 21 C -0.138 4.138 22 C -0.149 4.149 23 C -0.135 4.135 24 C -0.164 4.164 25 H 0.084 0.916 26 H 0.168 0.832 27 H 0.184 0.816 28 H 0.262 0.738 29 H 0.148 0.852 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.165 0.835 33 H 0.174 0.826 34 H 0.167 0.833 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.142 -1.531 2.401 11.500 hybrid contribution -1.257 0.966 0.062 1.587 sum 9.885 -0.565 2.463 10.203 Atomic orbital electron populations 1.69986 1.07894 1.28718 1.49105 1.25751 0.95428 1.02066 0.92835 0.86586 0.80762 0.80099 0.80127 1.17592 1.15835 1.19761 1.21228 0.90157 0.93940 1.51680 0.94388 1.19317 0.93051 0.90113 0.81612 0.93667 1.86002 1.82269 1.42239 1.13789 1.19418 0.94574 0.91833 0.86386 1.20605 1.04817 1.01404 0.90165 1.21424 0.99031 0.93776 0.97236 1.18233 1.03341 0.92234 0.85090 1.84787 1.44335 1.77293 1.24910 1.21329 0.99512 1.00782 0.92110 1.21541 1.06266 0.96776 0.99084 1.20017 0.96211 0.95132 0.95921 1.21021 1.00069 0.94476 0.98562 1.21442 0.98337 1.01091 0.92936 1.21463 1.00595 0.92854 0.99960 1.21368 0.98881 0.96844 0.96453 1.21105 1.00829 0.99212 0.95215 0.91606 0.83213 0.81566 0.73760 0.85216 0.86744 0.87176 0.83530 0.82610 0.83264 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.59 13.96 21.45 0.30 -55.29 16 2 C 0.04 2.31 5.28 84.65 0.45 2.76 16 3 Si 0.90 41.59 24.64 68.60 1.69 43.28 16 4 H -0.25 -10.99 6.68 99.48 0.66 -10.33 16 5 H -0.23 -9.98 4.92 99.48 0.49 -9.49 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.53 -30.65 8.68 25.60 0.22 -30.43 16 8 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 9 C 0.21 10.53 1.91 29.10 0.06 10.58 16 10 H 0.05 2.22 3.39 -2.39 -0.01 2.21 16 11 O -0.33 -15.64 8.93 -93.30 -0.83 -16.47 16 12 C 0.12 5.38 6.60 22.49 0.15 5.53 16 13 C -0.15 -5.20 9.98 22.36 0.22 -4.98 16 14 C -0.10 -2.81 9.98 22.36 0.22 -2.59 16 15 C 0.06 1.75 6.70 22.49 0.15 1.90 16 16 O -0.50 -12.77 13.50 -93.34 -1.26 -14.03 16 17 C -0.12 -4.43 9.98 22.35 0.22 -4.21 16 18 C -0.22 -9.60 8.71 22.35 0.19 -9.40 16 19 C -0.07 -3.21 4.99 -19.86 -0.10 -3.31 16 20 C -0.12 -4.89 9.35 22.27 0.21 -4.69 16 21 C -0.12 -3.72 10.05 22.27 0.22 -3.50 16 22 C -0.13 -3.60 10.05 22.27 0.22 -3.38 16 23 C -0.12 -3.60 10.05 22.27 0.22 -3.37 16 24 C -0.15 -5.68 9.68 22.27 0.22 -5.47 16 25 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 26 H 0.15 4.41 8.06 -2.91 -0.02 4.39 16 27 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 28 H 0.40 6.28 9.06 -74.06 -0.67 5.61 16 29 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 30 H 0.11 5.43 1.38 -2.91 0.00 5.43 16 31 H 0.11 4.50 7.62 -2.91 -0.02 4.48 16 32 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 34 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 35 H 0.11 4.32 6.61 -2.91 -0.02 4.30 16 Total: -1.00 -70.09 294.50 2.98 -67.11 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.20 Total: 29.96 kcal Atomic # 6 Polarization: -57.44 SS G_CDS: 2.88 Total: -54.55 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.30 Total: -55.29 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -2.09 Total: -30.50 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.69 Total: 43.28 kcal Total: -70.09 2.98 -67.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227445521.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.171 kcal (2) G-P(sol) polarization free energy of solvation -70.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds