Wall clock time and date at job start Mon Mar 30 2020 01:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99774 * 2 1 4 4 H 1.48508 * 109.47189 * 240.00109 * 3 2 1 5 5 H 1.48493 * 109.47398 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47040 * 120.00430 * 3 2 1 7 7 C 1.37872 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99547 * 189.42487 * 7 2 1 9 9 C 1.50696 * 120.00468 * 9.42403 * 7 2 1 10 10 H 1.08999 * 109.47451 * 185.50439 * 9 7 2 11 11 O 1.42906 * 109.46899 * 305.49969 * 9 7 2 12 12 C 1.35892 * 116.99913 * 279.36825 * 11 9 7 13 13 C 1.38789 * 120.03216 * 4.54987 * 12 11 9 14 14 C 1.38155 * 120.05709 * 180.02562 * 13 12 11 15 15 C 1.38199 * 120.10661 * 0.24909 * 14 13 12 16 16 C 1.38746 * 120.05570 * 359.44964 * 15 14 13 17 17 O 1.35903 * 120.03012 * 180.27238 * 16 15 14 18 18 C 1.38614 * 120.02283 * 184.56724 * 12 11 9 19 19 C 1.50697 * 109.47149 * 65.50137 * 9 7 2 20 20 C 1.38236 * 120.00035 * 271.16919 * 19 9 7 21 21 C 1.38234 * 119.99991 * 179.81052 * 20 19 9 22 22 C 1.38231 * 120.00047 * 0.39542 * 21 20 19 23 23 C 1.38237 * 119.99787 * 359.86058 * 22 21 20 24 24 C 1.38231 * 120.00225 * 359.95376 * 23 22 21 25 25 H 0.97003 * 119.99951 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.97108 * 0.02562 * 13 12 11 27 27 H 1.07999 * 119.94438 * 179.97438 * 14 13 12 28 28 H 1.08001 * 119.96854 * 179.70692 * 15 14 13 29 29 H 0.96699 * 113.99832 * 270.30018 * 17 16 15 30 30 H 1.07999 * 120.05772 * 359.96223 * 18 12 11 31 31 H 1.08009 * 119.99801 * 359.97438 * 20 19 9 32 32 H 1.08000 * 119.99785 * 180.22989 * 21 20 19 33 33 H 1.07994 * 120.00085 * 179.82957 * 22 21 20 34 34 H 1.08000 * 119.99524 * 179.97438 * 23 22 21 35 35 H 1.08002 * 120.00138 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0736 -1.2004 0.1526 9 6 1.2663 -2.4902 -0.2148 10 1 1.9542 -3.3258 -0.0857 11 8 0.2044 -2.5963 0.7357 12 6 0.5349 -3.0142 1.9858 13 6 1.8657 -3.2252 2.3185 14 6 2.2022 -3.6505 3.5892 15 6 1.2147 -3.8719 4.5303 16 6 -0.1167 -3.6564 4.2045 17 8 -1.0869 -3.8689 5.1321 18 6 -0.4570 -3.2304 2.9296 19 6 0.6968 -2.5193 -1.6097 20 6 -0.5623 -2.0031 -1.8531 21 6 -1.0831 -2.0263 -3.1334 22 6 -0.3483 -2.5730 -4.1687 23 6 0.9086 -3.0940 -3.9243 24 6 1.4310 -3.0674 -2.6448 25 1 -0.4850 0.8401 0.0004 26 1 2.6388 -3.0568 1.5835 27 1 3.2383 -3.8146 3.8460 28 1 1.4799 -4.2089 5.5215 29 1 -1.4351 -4.7710 5.1374 30 1 -1.4931 -3.0665 2.6728 31 1 -1.1380 -1.5793 -1.0435 32 1 -2.0652 -1.6196 -3.3242 33 1 -0.7563 -2.5935 -5.1684 34 1 1.4826 -3.5215 -4.7331 35 1 2.4132 -3.4740 -2.4539 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227555578.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:47 Heat of formation + Delta-G solvation = -25.749578 kcal Electronic energy + Delta-G solvation = -20121.917907 eV Core-core repulsion = 17050.543326 eV Total energy + Delta-G solvation = -3071.374581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.45662 -38.41984 -37.30895 -35.31416 -32.99347 -30.91928 -29.94112 -29.58605 -28.44898 -26.96632 -23.45968 -22.10072 -21.78700 -21.28470 -20.12369 -18.22567 -16.78864 -16.19084 -16.02310 -15.25575 -15.14852 -14.90439 -14.30984 -14.07328 -13.75253 -13.51556 -13.14500 -12.78749 -12.48410 -12.18528 -11.94914 -11.72162 -11.38202 -11.07686 -11.01379 -10.84685 -10.55153 -10.47498 -10.17561 -10.11537 -9.49916 -9.34395 -8.72891 -8.16113 -7.99987 -7.68563 -7.21021 -6.20365 -4.40635 1.87388 2.16333 2.27007 2.38394 3.21463 3.26527 3.28902 4.20703 4.26674 4.39641 4.75392 4.90109 5.10652 5.50395 5.66039 5.66836 5.76095 5.86487 5.95991 6.10611 6.17609 6.21886 6.38481 6.43582 6.63879 6.64340 6.87868 6.94453 7.05152 7.08616 7.14344 7.27597 7.36700 7.50410 7.65107 7.78040 7.82605 8.02174 8.06104 8.45362 8.84097 9.32827 10.76654 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.015996 B = 0.006965 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.976554 B = 4018.882507 C = 4875.686227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.088 3.912 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.557 4.557 8 H 0.067 0.933 9 C 0.241 3.759 10 H 0.034 0.966 11 O -0.284 6.284 12 C 0.196 3.804 13 C -0.210 4.210 14 C -0.072 4.072 15 C -0.213 4.213 16 C 0.130 3.870 17 O -0.502 6.502 18 C -0.201 4.201 19 C -0.036 4.036 20 C -0.070 4.070 21 C -0.141 4.141 22 C -0.146 4.146 23 C -0.138 4.138 24 C -0.126 4.126 25 H 0.266 0.734 26 H 0.136 0.864 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.383 0.617 30 H 0.126 0.874 31 H 0.152 0.848 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.023 -7.277 0.712 7.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.121 4.121 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.593 4.593 8 H 0.085 0.915 9 C 0.187 3.813 10 H 0.052 0.948 11 O -0.195 6.195 12 C 0.147 3.853 13 C -0.229 4.229 14 C -0.091 4.091 15 C -0.232 4.232 16 C 0.086 3.914 17 O -0.312 6.312 18 C -0.220 4.220 19 C -0.037 4.037 20 C -0.088 4.088 21 C -0.159 4.159 22 C -0.165 4.165 23 C -0.157 4.157 24 C -0.144 4.144 25 H 0.076 0.924 26 H 0.154 0.846 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.237 0.763 30 H 0.144 0.856 31 H 0.169 0.831 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.249 -6.496 0.737 6.542 hybrid contribution 0.660 0.730 -0.207 1.006 sum 0.411 -5.766 0.529 5.805 Atomic orbital electron populations 1.69944 1.05957 1.27053 1.44115 1.24963 0.94773 0.99318 0.93081 0.86664 0.79953 0.82707 0.78896 1.19920 1.20952 1.19923 1.21259 0.94463 0.90498 1.53073 0.91463 1.18955 0.84045 0.96015 0.82305 0.94817 1.86235 1.39056 1.77730 1.16460 1.18787 0.91828 0.88209 0.86512 1.21464 0.96419 1.06747 0.98234 1.20714 0.98328 0.97228 0.92811 1.20989 0.92382 1.09649 1.00155 1.18045 0.87233 0.98991 0.87090 1.84805 1.55000 1.34860 1.56492 1.20550 0.99603 1.09833 0.92060 1.19922 0.93698 0.94755 0.95310 1.21579 0.95695 0.94767 0.96808 1.21148 0.99564 1.01313 0.93899 1.20865 0.95617 1.01812 0.98157 1.20785 0.96197 1.02421 0.96253 1.20758 0.99441 1.01374 0.92835 0.92430 0.84634 0.86532 0.86712 0.76260 0.85611 0.83060 0.87586 0.87804 0.87514 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.11 9.43 55.43 0.52 -21.58 16 2 C 0.09 2.27 5.21 -17.82 -0.09 2.18 16 3 Si 0.89 20.51 29.55 -169.99 -5.02 15.48 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.56 -14.14 7.56 -34.44 -0.26 -14.40 16 8 H 0.07 1.68 7.83 -52.48 -0.41 1.27 16 9 C 0.24 5.66 2.12 -29.04 -0.06 5.60 16 10 H 0.03 0.75 6.48 -51.93 -0.34 0.41 16 11 O -0.28 -6.85 7.69 -19.40 -0.15 -7.00 16 12 C 0.20 4.31 6.55 -39.24 -0.26 4.05 16 13 C -0.21 -4.22 8.62 -39.41 -0.34 -4.56 16 14 C -0.07 -1.25 10.04 -39.63 -0.40 -1.65 16 15 C -0.21 -3.57 9.98 -39.41 -0.39 -3.96 16 16 C 0.13 2.33 6.70 -39.24 -0.26 2.06 16 17 O -0.50 -7.70 13.50 -19.44 -0.26 -7.96 16 18 C -0.20 -4.05 9.93 -39.29 -0.39 -4.44 16 19 C -0.04 -0.82 4.84 -104.63 -0.51 -1.33 16 20 C -0.07 -1.59 8.12 -39.58 -0.32 -1.91 16 21 C -0.14 -2.77 10.05 -39.59 -0.40 -3.17 16 22 C -0.15 -2.62 10.05 -39.58 -0.40 -3.02 16 23 C -0.14 -2.49 10.05 -39.58 -0.40 -2.89 16 24 C -0.13 -2.52 9.70 -39.59 -0.38 -2.91 16 25 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 26 H 0.14 2.75 5.60 -52.49 -0.29 2.46 16 27 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.38 3.74 9.06 45.56 0.41 4.16 16 30 H 0.13 2.48 8.06 -52.49 -0.42 2.06 16 31 H 0.15 3.74 5.86 -52.48 -0.31 3.43 16 32 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.11 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 300.55 15.07 4.53 4.53 Total: -1.00 -28.54 300.55 -8.27 -36.82 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -3.03 Total: 10.05 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -4.86 Total: -30.34 kcal Atomic # 7 Polarization: -22.11 SS G_CDS: 0.52 Total: -21.58 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.41 Total: -14.96 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.54 -8.27 -36.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227555578.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.067 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds