Wall clock time and date at job start Mon Mar 30 2020 01:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86794 * 119.99782 * 2 1 4 4 H 1.48500 * 109.47120 * 274.95954 * 3 2 1 5 5 H 1.48503 * 109.47669 * 34.96255 * 3 2 1 6 6 H 1.48499 * 109.47261 * 154.96591 * 3 2 1 7 7 C 1.39934 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99601 * 195.31180 * 7 2 1 9 9 C 1.41151 * 119.99674 * 15.31315 * 7 2 1 10 10 C 1.40719 * 120.29558 * 25.98942 * 9 7 2 11 11 C 1.36495 * 119.93011 * 180.28012 * 10 9 7 12 12 C 1.38810 * 120.53804 * 359.76015 * 11 10 9 13 13 C 1.38311 * 120.59245 * 359.97438 * 12 11 10 14 14 C 1.38443 * 120.05125 * 0.02562 * 13 12 11 15 15 O 1.35644 * 120.26551 * 179.97438 * 14 13 12 16 16 C 1.42895 * 117.00281 * 354.89177 * 15 14 13 17 17 H 1.09000 * 110.42288 * 321.04174 * 16 15 14 18 18 C 1.54537 * 110.58828 * 198.44919 * 16 15 14 19 19 C 1.54396 * 101.76806 * 216.07758 * 18 16 15 20 20 N 1.47006 * 105.53406 * 25.70836 * 19 18 16 21 21 C 1.37198 * 141.59957 * 163.00951 * 20 19 18 22 22 C 1.34564 * 106.83453 * 179.76549 * 21 20 19 23 23 N 1.34003 * 108.03329 * 359.83800 * 22 21 20 24 24 C 1.30908 * 109.30095 * 0.41913 * 23 22 21 25 25 H 0.97000 * 119.99697 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.03757 * 0.04093 * 10 9 7 27 27 H 1.07999 * 119.73136 * 179.74216 * 11 10 9 28 28 H 1.07998 * 119.70604 * 179.97438 * 12 11 10 29 29 H 1.08004 * 119.97362 * 180.02562 * 13 12 11 30 30 H 1.09000 * 110.96892 * 334.19484 * 18 16 15 31 31 H 1.08996 * 110.96965 * 97.95893 * 18 16 15 32 32 H 1.08996 * 110.23199 * 144.72178 * 19 18 16 33 33 H 1.08996 * 110.23550 * 266.60648 * 19 18 16 34 34 H 1.07991 * 126.57977 * 359.80269 * 21 20 19 35 35 H 1.07999 * 125.97986 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3853 2.1069 -1.3948 5 1 1.4965 2.6202 0.8023 6 1 3.5888 1.4122 0.5924 7 6 2.0084 -1.2119 0.0005 8 1 3.0596 -1.2283 0.2475 9 6 1.3401 -2.4127 -0.3218 10 6 0.1968 -2.3907 -1.1419 11 6 -0.4469 -3.5557 -1.4441 12 6 0.0195 -4.7673 -0.9528 13 6 1.1443 -4.8149 -0.1494 14 6 1.8162 -3.6481 0.1726 15 8 2.9195 -3.6897 0.9606 16 6 3.2713 -4.9576 1.5179 17 1 2.3766 -5.5013 1.8210 18 6 4.2270 -4.7770 2.7188 19 6 5.1582 -5.9991 2.5668 20 7 5.1287 -6.3411 1.1374 21 6 5.8149 -7.0561 0.1885 22 6 5.1525 -6.8990 -0.9723 23 7 4.0908 -6.1148 -0.7413 24 6 4.0738 -5.7705 0.5216 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1732 -1.4526 -1.5286 27 1 -1.3265 -3.5347 -2.0704 28 1 -0.5005 -5.6810 -1.2001 29 1 1.4988 -5.7631 0.2271 30 1 4.7880 -3.8463 2.6344 31 1 3.6810 -4.8175 3.6613 32 1 6.1722 -5.7406 2.8717 33 1 4.7867 -6.8326 3.1629 34 1 6.7136 -7.6343 0.3436 35 1 5.4273 -7.3313 -1.9231 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230272306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:38 Heat of formation + Delta-G solvation = 67.385902 kcal Electronic energy + Delta-G solvation = -20216.836498 eV Core-core repulsion = 17181.793326 eV Total energy + Delta-G solvation = -3035.043172 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.24484 -38.67853 -36.60741 -35.21456 -33.49305 -31.10836 -29.53810 -28.64141 -28.34072 -26.50826 -24.98690 -22.32666 -21.36340 -20.72126 -20.43261 -19.40876 -17.53205 -16.92342 -16.63476 -15.68681 -15.06659 -14.53343 -14.52558 -14.08746 -13.90325 -13.66011 -13.28903 -12.95570 -12.61677 -12.48929 -12.06335 -11.99271 -11.62762 -11.32904 -11.07949 -10.86002 -10.76109 -10.40942 -10.05888 -9.63693 -9.52982 -9.40842 -9.34402 -9.09239 -8.18467 -7.32561 -6.92346 -6.59210 -4.15794 2.17322 2.78947 2.85226 3.11980 3.14863 3.19519 3.29629 3.37281 3.97334 4.03869 4.17146 4.48798 4.70121 4.76221 4.88459 5.07057 5.20132 5.37112 5.60397 5.71604 5.79266 5.81145 5.88578 6.26932 6.44531 6.45612 6.57944 7.02722 7.06493 7.17408 7.21258 7.41863 7.47668 7.84857 7.88469 8.19394 8.32982 8.40953 8.48044 8.79612 8.96724 9.15548 10.32696 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.006127 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.569703 B = 4569.110222 C = 5316.745813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.447 4.447 8 H 0.079 0.921 9 C 0.102 3.898 10 C -0.144 4.144 11 C -0.126 4.126 12 C -0.211 4.211 13 C -0.152 4.152 14 C 0.007 3.993 15 O -0.285 6.285 16 C 0.166 3.834 17 H 0.093 0.907 18 C -0.124 4.124 19 C 0.107 3.893 20 N -0.483 5.483 21 C -0.047 4.047 22 C -0.025 4.025 23 N -0.456 5.456 24 C 0.177 3.823 25 H 0.278 0.722 26 H 0.124 0.876 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.169 0.831 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.552 -8.983 5.997 13.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.478 4.478 8 H 0.098 0.902 9 C 0.099 3.901 10 C -0.164 4.164 11 C -0.144 4.144 12 C -0.230 4.230 13 C -0.171 4.171 14 C -0.036 4.036 15 O -0.197 6.197 16 C 0.105 3.895 17 H 0.111 0.889 18 C -0.162 4.162 19 C -0.014 4.014 20 N -0.169 5.169 21 C -0.179 4.179 22 C -0.174 4.174 23 N -0.174 5.174 24 C -0.087 4.087 25 H 0.089 0.911 26 H 0.142 0.858 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.186 0.814 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.063 -8.472 5.636 12.983 hybrid contribution 1.007 0.044 0.446 1.102 sum 9.070 -8.428 6.082 13.794 Atomic orbital electron populations 1.69841 1.07394 1.28821 1.36872 1.25862 0.94725 1.01070 0.92649 0.86306 0.80554 0.80860 0.79004 1.19504 1.20437 1.18693 1.19395 0.97317 0.90470 1.40572 0.90240 1.17024 0.92429 0.89577 0.91030 1.20873 0.98086 0.97171 1.00269 1.20384 0.99413 0.93340 1.01280 1.20124 1.00080 0.96271 1.06554 1.20514 0.98316 0.95100 1.03122 1.19108 0.90097 0.94756 0.99676 1.86054 1.44203 1.26580 1.62906 1.21072 0.95249 0.85109 0.88032 0.88919 1.22810 0.96731 0.98487 0.98127 1.22370 1.02188 0.98349 0.78539 1.46440 1.22974 1.38022 1.09489 1.22289 1.01881 1.05275 0.88426 1.22409 0.94421 1.02626 0.97928 1.70036 1.20999 1.13700 1.12687 1.25108 0.92157 1.00727 0.90672 0.91137 0.85821 0.89432 0.89480 0.88876 0.87950 0.87385 0.89049 0.89214 0.81370 0.81113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.22 10.91 55.55 0.61 -20.62 16 2 C 0.07 1.89 5.18 -17.32 -0.09 1.80 16 3 Si 0.91 19.42 29.59 -169.99 -5.03 14.39 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.45 -12.40 8.72 -37.84 -0.33 -12.73 16 8 H 0.08 2.20 7.66 -52.49 -0.40 1.80 16 9 C 0.10 2.85 5.58 -106.68 -0.59 2.25 16 10 C -0.14 -3.91 8.63 -39.27 -0.34 -4.25 16 11 C -0.13 -3.11 9.97 -40.00 -0.40 -3.50 16 12 C -0.21 -5.05 10.04 -39.34 -0.39 -5.44 16 13 C -0.15 -3.65 8.73 -39.48 -0.34 -4.00 16 14 C 0.01 0.19 6.64 -38.33 -0.25 -0.07 16 15 O -0.28 -6.60 9.19 -18.63 -0.17 -6.78 16 16 C 0.17 2.94 2.81 -26.65 -0.07 2.87 16 17 H 0.09 1.58 6.62 -51.93 -0.34 1.23 16 18 C -0.12 -1.49 6.90 -25.19 -0.17 -1.66 16 19 C 0.11 1.08 7.78 -3.03 -0.02 1.06 16 20 N -0.48 -7.04 3.61 -112.28 -0.41 -7.45 16 21 C -0.05 -0.64 12.04 -16.45 -0.20 -0.84 16 22 C -0.02 -0.40 11.86 -17.90 -0.21 -0.61 16 23 N -0.46 -9.35 11.26 -10.56 -0.12 -9.47 16 24 C 0.18 3.29 7.27 -154.85 -1.13 2.17 16 25 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 26 H 0.12 3.41 6.17 -52.49 -0.32 3.09 16 27 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 28 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.09 2.07 5.73 -52.48 -0.30 1.77 16 30 H 0.10 1.29 8.11 -51.93 -0.42 0.87 16 31 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.17 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 297.25 15.07 4.48 4.48 Total: -1.00 -33.10 297.25 -9.08 -42.18 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -3.89 Total: 6.21 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -4.55 Total: -22.96 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.08 Total: -37.53 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.17 Total: -6.78 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.10 -9.08 -42.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230272306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.569 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds