Wall clock time and date at job start Mon Mar 30 2020 01:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35877 * 117.00176 * 2 1 4 4 C 1.38836 * 119.92742 * 180.02562 * 3 2 1 5 5 C 1.37898 * 120.06920 * 179.70871 * 4 3 2 6 6 C 1.39425 * 119.92893 * 0.26740 * 5 4 3 7 7 C 1.48268 * 120.07076 * 179.97438 * 6 5 4 8 8 C 1.39292 * 120.16362 * 309.73123 * 7 6 5 9 9 C 1.38011 * 119.94235 * 179.69504 * 8 7 6 10 10 C 1.38445 * 120.27036 * 0.58198 * 9 8 7 11 11 C 1.38118 * 120.32916 * 359.71472 * 10 9 8 12 12 C 1.38748 * 120.04811 * 359.97438 * 11 10 9 13 13 O 1.35674 * 120.13649 * 180.02562 * 12 11 10 14 14 C 1.34811 * 116.99646 * 354.38696 * 13 12 11 15 15 H 1.07999 * 120.00017 * 5.06505 * 14 13 12 16 16 C 1.38648 * 119.99854 * 185.05378 * 14 13 12 17 17 N 1.31559 * 119.99903 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99628 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47452 * 89.99988 * 18 16 14 20 20 H 1.48506 * 109.46894 * 209.99411 * 18 16 14 21 21 H 1.48490 * 109.47721 * 329.99544 * 18 16 14 22 22 C 1.39431 * 119.86197 * 0.02562 * 6 5 4 23 23 C 1.37905 * 119.92619 * 359.97438 * 22 6 5 24 24 H 1.08997 * 109.47024 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46606 * 299.99606 * 1 2 3 26 26 H 1.09004 * 109.47188 * 59.99809 * 1 2 3 27 27 H 1.08003 * 119.96719 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.03403 * 180.25638 * 5 4 3 29 29 H 1.08005 * 120.02849 * 359.97438 * 8 7 6 30 30 H 1.08004 * 119.86503 * 180.32212 * 9 8 7 31 31 H 1.08004 * 119.83968 * 179.74257 * 10 9 8 32 32 H 1.07990 * 119.97692 * 179.97438 * 11 10 9 33 33 H 0.96996 * 119.99657 * 180.02562 * 17 16 14 34 34 H 1.07997 * 120.04030 * 179.97438 * 22 6 5 35 35 H 1.07993 * 119.96253 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 3.4325 1.2815 -0.0005 5 6 4.0616 2.5086 -0.0066 6 6 3.3037 3.6789 -0.0066 7 6 3.9769 4.9999 -0.0125 8 6 4.9842 5.2763 0.9090 9 6 5.6120 6.5053 0.8953 10 6 5.2368 7.4705 -0.0235 11 6 4.2352 7.2106 -0.9384 12 6 3.5994 5.9774 -0.9408 13 8 2.6157 5.7200 -1.8390 14 6 2.2223 6.7418 -2.6254 15 1 2.7412 7.6880 -2.5811 16 6 1.1519 6.5780 -3.4912 17 7 0.7683 7.5751 -4.2590 18 14 0.2543 4.9416 -3.5673 19 1 -0.8601 4.9421 -2.5858 20 1 -0.2900 4.7387 -4.9341 21 1 1.1992 3.8431 -3.2428 22 6 1.9114 3.6043 0.0002 23 6 1.2884 2.3741 0.0062 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 4.0190 0.3746 -0.0005 28 1 5.1402 2.5631 -0.0112 29 1 5.2767 4.5280 1.6308 30 1 6.3965 6.7164 1.6071 31 1 5.7300 8.4313 -0.0253 32 1 3.9468 7.9677 -1.6523 33 1 0.0192 7.4606 -4.8644 34 1 1.3216 4.5090 0.0006 35 1 0.2100 2.3157 0.0118 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239486596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:29 Heat of formation + Delta-G solvation = -13.498236 kcal Electronic energy + Delta-G solvation = -19899.261014 eV Core-core repulsion = 16828.417692 eV Total energy + Delta-G solvation = -3070.843323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.96649 -39.16267 -37.17234 -36.35349 -32.47053 -31.65205 -30.80002 -29.27347 -28.32741 -26.86586 -25.29544 -22.72397 -22.42233 -21.08866 -20.50361 -17.99124 -17.88086 -17.32607 -15.98647 -15.64326 -15.61678 -14.80323 -14.51042 -14.05659 -13.90838 -13.76720 -13.49710 -13.44085 -12.97920 -12.49373 -12.32587 -12.24313 -12.02434 -11.70892 -11.48318 -11.02122 -10.84732 -10.77353 -10.65403 -10.49933 -10.18913 -9.43427 -8.92773 -8.67563 -8.49613 -7.74612 -7.19408 -6.46746 -4.12400 1.47646 1.70710 2.20653 2.27981 3.17438 3.20945 3.39777 3.40823 4.08152 4.19880 4.48649 4.78746 5.00788 5.05122 5.13867 5.16459 5.21625 5.28472 5.44697 5.55694 5.67078 5.71536 5.78294 5.95450 5.96976 6.18311 6.37784 6.43006 6.53505 6.63326 6.81283 6.89971 6.97576 7.16929 7.18115 7.27712 7.56522 7.59746 7.75381 7.98631 8.88746 9.51295 10.60716 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.012878 B = 0.008691 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.676716 B = 3220.805023 C = 5191.725835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.111 3.889 4 C -0.154 4.154 5 C -0.077 4.077 6 C -0.046 4.046 7 C -0.128 4.128 8 C -0.064 4.064 9 C -0.206 4.206 10 C -0.073 4.073 11 C -0.221 4.221 12 C 0.170 3.830 13 O -0.206 6.206 14 C -0.390 4.390 15 H 0.107 0.893 16 C 0.067 3.933 17 N -0.877 5.877 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.253 1.253 22 C -0.054 4.054 23 C -0.207 4.207 24 H 0.096 0.904 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.280 0.720 34 H 0.127 0.873 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.514 -9.821 9.138 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.067 3.933 4 C -0.173 4.173 5 C -0.096 4.096 6 C -0.046 4.046 7 C -0.129 4.129 8 C -0.082 4.082 9 C -0.225 4.225 10 C -0.091 4.091 11 C -0.240 4.240 12 C 0.117 3.883 13 O -0.110 6.110 14 C -0.465 4.465 15 H 0.124 0.876 16 C -0.136 4.136 17 N -0.515 5.515 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.177 1.177 22 C -0.072 4.072 23 C -0.226 4.226 24 H 0.114 0.886 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.152 0.848 33 H 0.090 0.910 34 H 0.145 0.855 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.290 -10.140 8.889 13.678 hybrid contribution -0.767 -0.175 -0.321 0.850 sum 1.524 -10.316 8.568 13.496 Atomic orbital electron populations 1.23004 0.78879 1.03402 1.01461 1.86002 1.21029 1.27390 1.89220 1.19013 0.92338 0.83785 0.98170 1.20221 0.91102 0.98272 1.07682 1.21003 0.99547 0.90664 0.98337 1.18556 0.92613 0.92094 1.01335 1.17838 1.02265 0.93134 0.99699 1.20723 0.94312 0.96525 0.96685 1.20595 1.04072 0.94945 1.02871 1.20871 0.95743 0.98150 0.94325 1.21237 1.00825 0.98333 1.03602 1.19078 0.88798 0.92161 0.88221 1.83591 1.46511 1.38141 1.42761 1.20784 1.15569 0.92534 1.17639 0.87564 1.24417 0.95865 0.98515 0.94839 1.69640 1.27276 1.31103 1.23448 0.86335 0.80332 0.83886 0.77546 1.19791 1.20810 1.17672 1.21097 0.94123 0.97016 0.95008 1.21137 0.99729 0.92373 1.09335 0.88601 0.92776 0.92729 0.85618 0.85458 0.86692 0.87279 0.87171 0.84792 0.91018 0.85463 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.74 10.49 -19.35 -0.20 -4.94 16 3 C 0.11 1.82 6.69 -39.14 -0.26 1.56 16 4 C -0.15 -2.41 9.97 -39.48 -0.39 -2.81 16 5 C -0.08 -1.27 9.51 -39.26 -0.37 -1.64 16 6 C -0.05 -0.87 5.28 -104.89 -0.55 -1.42 16 7 C -0.13 -2.54 5.48 -104.73 -0.57 -3.12 16 8 C -0.06 -1.09 9.51 -39.27 -0.37 -1.47 16 9 C -0.21 -3.37 10.03 -39.59 -0.40 -3.77 16 10 C -0.07 -1.29 10.03 -39.55 -0.40 -1.68 16 11 C -0.22 -4.68 9.16 -39.44 -0.36 -5.04 16 12 C 0.17 3.87 6.56 -38.74 -0.25 3.62 16 13 O -0.21 -5.27 6.94 0.34 0.00 -5.27 16 14 C -0.39 -10.75 9.95 30.88 0.31 -10.44 16 15 H 0.11 2.99 5.44 -52.49 -0.29 2.71 16 16 C 0.07 1.86 5.49 -17.52 -0.10 1.77 16 17 N -0.88 -25.07 13.96 55.48 0.77 -24.30 16 18 Si 0.89 21.50 28.62 -169.99 -4.86 16.63 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.25 -6.22 7.11 56.52 0.40 -5.81 16 22 C -0.05 -1.04 8.78 -39.26 -0.34 -1.39 16 23 C -0.21 -3.54 9.02 -39.48 -0.36 -3.89 16 24 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.53 7.64 -51.93 -0.40 0.13 16 26 H 0.05 0.60 7.67 -51.93 -0.40 0.20 16 27 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 28 H 0.13 1.80 8.04 -52.49 -0.42 1.38 16 29 H 0.12 1.64 8.04 -52.48 -0.42 1.22 16 30 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 31 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 32 H 0.13 2.97 5.64 -52.49 -0.30 2.67 16 33 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.13 2.56 7.68 -52.49 -0.40 2.16 16 35 H 0.12 1.83 6.28 -52.49 -0.33 1.50 16 LS Contribution 303.66 15.07 4.58 4.58 Total: -1.00 -29.86 303.66 -6.93 -36.79 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -3.78 Total: 4.93 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: -3.44 Total: -28.42 kcal Atomic # 7 Polarization: -25.07 SS G_CDS: 0.77 Total: -24.30 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -0.20 Total: -10.21 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.86 Total: 16.63 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.86 -6.93 -36.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239486596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.289 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds