Wall clock time and date at job start Mon Mar 30 2020 01:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35877 * 117.00176 * 2 1 4 4 C 1.38836 * 119.92742 * 180.02562 * 3 2 1 5 5 C 1.37898 * 120.06920 * 179.70871 * 4 3 2 6 6 C 1.39425 * 119.92893 * 0.26740 * 5 4 3 7 7 C 1.48268 * 120.07076 * 179.97438 * 6 5 4 8 8 C 1.39292 * 120.16362 * 309.73123 * 7 6 5 9 9 C 1.38011 * 119.94235 * 179.69504 * 8 7 6 10 10 C 1.38445 * 120.27036 * 0.58198 * 9 8 7 11 11 C 1.38118 * 120.32916 * 359.71472 * 10 9 8 12 12 C 1.38748 * 120.04811 * 359.97438 * 11 10 9 13 13 O 1.35674 * 120.13649 * 180.02562 * 12 11 10 14 14 C 1.34811 * 116.99646 * 354.38696 * 13 12 11 15 15 H 1.07999 * 120.00017 * 5.06505 * 14 13 12 16 16 C 1.38648 * 119.99854 * 185.05378 * 14 13 12 17 17 N 1.31559 * 119.99903 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99628 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47452 * 89.99988 * 18 16 14 20 20 H 1.48506 * 109.46894 * 209.99411 * 18 16 14 21 21 H 1.48490 * 109.47721 * 329.99544 * 18 16 14 22 22 C 1.39431 * 119.86197 * 0.02562 * 6 5 4 23 23 C 1.37905 * 119.92619 * 359.97438 * 22 6 5 24 24 H 1.08997 * 109.47024 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46606 * 299.99606 * 1 2 3 26 26 H 1.09004 * 109.47188 * 59.99809 * 1 2 3 27 27 H 1.08003 * 119.96719 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.03403 * 180.25638 * 5 4 3 29 29 H 1.08005 * 120.02849 * 359.97438 * 8 7 6 30 30 H 1.08004 * 119.86503 * 180.32212 * 9 8 7 31 31 H 1.08004 * 119.83968 * 179.74257 * 10 9 8 32 32 H 1.07990 * 119.97692 * 179.97438 * 11 10 9 33 33 H 0.96996 * 119.99657 * 180.02562 * 17 16 14 34 34 H 1.07997 * 120.04030 * 179.97438 * 22 6 5 35 35 H 1.07993 * 119.96253 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 3.4325 1.2815 -0.0005 5 6 4.0616 2.5086 -0.0066 6 6 3.3037 3.6789 -0.0066 7 6 3.9769 4.9999 -0.0125 8 6 4.9842 5.2763 0.9090 9 6 5.6120 6.5053 0.8953 10 6 5.2368 7.4705 -0.0235 11 6 4.2352 7.2106 -0.9384 12 6 3.5994 5.9774 -0.9408 13 8 2.6157 5.7200 -1.8390 14 6 2.2223 6.7418 -2.6254 15 1 2.7412 7.6880 -2.5811 16 6 1.1519 6.5780 -3.4912 17 7 0.7683 7.5751 -4.2590 18 14 0.2543 4.9416 -3.5673 19 1 -0.8601 4.9421 -2.5858 20 1 -0.2900 4.7387 -4.9341 21 1 1.1992 3.8431 -3.2428 22 6 1.9114 3.6043 0.0002 23 6 1.2884 2.3741 0.0062 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 4.0190 0.3746 -0.0005 28 1 5.1402 2.5631 -0.0112 29 1 5.2767 4.5280 1.6308 30 1 6.3965 6.7164 1.6071 31 1 5.7300 8.4313 -0.0253 32 1 3.9468 7.9677 -1.6523 33 1 0.0192 7.4606 -4.8644 34 1 1.3216 4.5090 0.0006 35 1 0.2100 2.3157 0.0118 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239486596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:29 Heat of formation + Delta-G solvation = -30.059196 kcal Electronic energy + Delta-G solvation = -19899.979151 eV Core-core repulsion = 16828.417692 eV Total energy + Delta-G solvation = -3071.561460 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.31800 -40.62203 -38.59234 -37.82235 -34.48474 -33.06136 -32.08981 -30.81213 -29.60497 -27.96991 -27.21813 -24.11094 -23.78788 -22.62084 -21.91501 -19.78019 -19.24651 -18.92210 -17.27696 -17.06886 -16.65936 -16.48467 -15.98771 -15.67040 -15.51285 -15.32388 -14.95746 -14.64232 -14.29804 -14.28142 -14.06967 -13.58957 -13.27241 -13.12342 -12.78676 -12.60166 -12.47383 -12.33296 -11.95462 -11.91716 -11.76797 -11.26541 -10.93945 -9.98463 -9.90088 -9.24314 -8.68143 -8.52978 -6.22480 0.09237 0.40419 0.68545 0.84181 1.24351 1.27656 1.46984 2.23372 2.36237 2.70608 2.82293 3.08968 3.16053 3.82272 3.87326 3.93092 4.17769 4.28366 4.31633 4.34858 4.43521 4.52010 4.56971 4.64917 4.71194 4.75313 4.93361 5.06848 5.11282 5.30082 5.38514 5.42399 5.59216 5.63892 5.74497 5.81045 5.84443 5.92459 6.25574 6.42293 6.82815 7.60054 8.58860 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.012878 B = 0.008691 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.676716 B = 3220.805023 C = 5191.725835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.112 3.888 4 C -0.153 4.153 5 C -0.071 4.071 6 C -0.073 4.073 7 C -0.126 4.126 8 C -0.062 4.062 9 C -0.179 4.179 10 C -0.075 4.075 11 C -0.241 4.241 12 C 0.129 3.871 13 O -0.231 6.231 14 C -0.394 4.394 15 H 0.082 0.918 16 C 0.016 3.984 17 N -0.922 5.922 18 Si 0.954 3.046 19 H -0.262 1.262 20 H -0.270 1.270 21 H -0.264 1.264 22 C -0.077 4.077 23 C -0.216 4.216 24 H 0.127 0.873 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.141 0.859 32 H 0.109 0.891 33 H 0.284 0.716 34 H 0.103 0.897 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.127 -12.371 11.437 17.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.067 3.933 4 C -0.172 4.172 5 C -0.089 4.089 6 C -0.074 4.074 7 C -0.127 4.127 8 C -0.079 4.079 9 C -0.198 4.198 10 C -0.093 4.093 11 C -0.261 4.261 12 C 0.079 3.921 13 O -0.138 6.138 14 C -0.470 4.470 15 H 0.100 0.900 16 C -0.182 4.182 17 N -0.563 5.563 18 Si 0.777 3.223 19 H -0.187 1.187 20 H -0.195 1.195 21 H -0.188 1.188 22 C -0.095 4.095 23 C -0.234 4.234 24 H 0.145 0.855 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.173 0.827 28 H 0.171 0.829 29 H 0.171 0.829 30 H 0.173 0.827 31 H 0.158 0.842 32 H 0.127 0.873 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.926 -12.694 11.226 17.394 hybrid contribution -1.055 0.563 -0.770 1.423 sum 2.871 -12.130 10.455 16.270 Atomic orbital electron populations 1.23331 0.76901 1.05671 1.01820 1.86006 1.23075 1.26322 1.88789 1.19200 0.92915 0.84075 0.97088 1.20592 0.91170 0.99087 1.06307 1.21245 1.00680 0.89882 0.97068 1.18694 0.92739 0.92637 1.03300 1.18220 1.02483 0.92998 0.98997 1.21219 0.92883 0.97759 0.96080 1.21172 1.03332 0.93597 1.01664 1.21235 0.94538 1.00098 0.93420 1.21286 1.02514 0.97619 1.04644 1.19655 0.89142 0.93935 0.89320 1.83556 1.48654 1.37242 1.44326 1.20721 1.15585 0.92540 1.18200 0.90011 1.25113 0.96716 1.01591 0.94789 1.69720 1.28612 1.32874 1.25068 0.85443 0.79116 0.79647 0.78110 1.18675 1.19536 1.18841 1.21041 0.94576 0.97026 0.96849 1.21288 1.00739 0.92025 1.09373 0.85469 0.91778 0.93019 0.82742 0.82878 0.82880 0.82681 0.84156 0.87330 0.90681 0.87926 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -8.72 10.49 -92.16 -0.97 -9.69 16 3 C 0.11 3.43 6.69 22.56 0.15 3.58 16 4 C -0.15 -4.33 9.97 22.33 0.22 -4.10 16 5 C -0.07 -2.14 9.51 22.48 0.21 -1.92 16 6 C -0.07 -2.72 5.28 -20.04 -0.11 -2.83 16 7 C -0.13 -4.90 5.48 -19.93 -0.11 -5.01 16 8 C -0.06 -1.87 9.51 22.47 0.21 -1.66 16 9 C -0.18 -5.08 10.03 22.27 0.22 -4.85 16 10 C -0.07 -2.51 10.03 22.29 0.22 -2.28 16 11 C -0.24 -10.57 9.16 22.36 0.20 -10.36 16 12 C 0.13 6.07 6.56 22.82 0.15 6.22 16 13 O -0.23 -12.50 6.94 -21.71 -0.15 -12.65 16 14 C -0.39 -23.23 9.95 67.92 0.68 -22.56 16 15 H 0.08 5.05 5.44 -2.91 -0.02 5.03 16 16 C 0.02 0.96 5.49 84.83 0.47 1.42 16 17 N -0.92 -55.44 13.96 21.61 0.30 -55.14 16 18 Si 0.95 46.23 28.62 68.60 1.96 48.19 16 19 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.26 -13.09 7.11 99.48 0.71 -12.39 16 22 C -0.08 -2.97 8.78 22.48 0.20 -2.78 16 23 C -0.22 -7.20 9.02 22.33 0.20 -7.00 16 24 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.06 1.10 7.64 -2.39 -0.02 1.08 16 26 H 0.05 1.02 7.67 -2.38 -0.02 1.01 16 27 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 28 H 0.15 3.70 8.04 -2.91 -0.02 3.68 16 29 H 0.15 3.52 8.04 -2.91 -0.02 3.49 16 30 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 31 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 32 H 0.11 5.22 5.64 -2.92 -0.02 5.21 16 33 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 34 H 0.10 4.38 7.68 -2.91 -0.02 4.36 16 35 H 0.14 3.99 6.28 -2.91 -0.02 3.98 16 Total: -1.00 -69.03 303.66 6.29 -62.74 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 1.10 Total: 19.23 kcal Atomic # 6 Polarization: -56.73 SS G_CDS: 4.04 Total: -52.69 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.30 Total: -55.14 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -1.12 Total: -22.34 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.96 Total: 48.19 kcal Total: -69.03 6.29 -62.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239486596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.681 kcal (2) G-P(sol) polarization free energy of solvation -69.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds