Wall clock time and date at job start Mon Mar 30 2020 01:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35857 * 116.99928 * 2 1 4 4 C 1.38558 * 120.12109 * 359.97373 * 3 2 1 5 5 C 1.38199 * 120.07014 * 180.02562 * 4 3 2 6 6 C 1.38391 * 120.30993 * 0.02562 * 5 4 3 7 7 C 1.38004 * 120.24347 * 359.67333 * 6 5 4 8 8 C 1.39345 * 119.92116 * 0.62052 * 7 6 5 9 9 C 1.48236 * 120.14843 * 179.67444 * 8 7 6 10 10 C 1.39305 * 120.16041 * 64.73299 * 9 8 7 11 11 C 1.38018 * 119.94327 * 179.97438 * 10 9 8 12 12 C 1.38447 * 120.26813 * 359.97438 * 11 10 9 13 13 C 1.38120 * 120.33099 * 0.02562 * 12 11 10 14 14 C 1.38743 * 120.05215 * 359.97438 * 13 12 11 15 15 O 1.35672 * 120.13820 * 180.02562 * 14 13 12 16 16 C 1.34816 * 116.99682 * 354.41364 * 15 14 13 17 17 H 1.07996 * 120.00343 * 5.05229 * 16 15 14 18 18 C 1.38642 * 119.99841 * 185.06502 * 16 15 14 19 19 N 1.31567 * 119.99713 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99948 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47691 * 89.99574 * 20 18 16 22 22 H 1.48504 * 109.47074 * 209.99559 * 20 18 16 23 23 H 1.48496 * 109.47234 * 329.98964 * 20 18 16 24 24 H 1.09005 * 109.47294 * 60.00210 * 1 2 3 25 25 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47322 * 300.00338 * 1 2 3 27 27 H 1.08002 * 119.96661 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.84324 * 179.97438 * 5 4 3 29 29 H 1.08009 * 119.87800 * 179.97438 * 6 5 4 30 30 H 1.07997 * 120.03619 * 180.30143 * 7 6 5 31 31 H 1.07997 * 120.03169 * 359.94653 * 10 9 8 32 32 H 1.07996 * 119.86737 * 180.02562 * 11 10 9 33 33 H 1.07999 * 119.83371 * 179.72279 * 12 11 10 34 34 H 1.08003 * 119.97486 * 179.97438 * 13 12 11 35 35 H 0.97003 * 119.99369 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 1.2935 2.3741 -0.0005 5 6 1.9220 3.6049 -0.0011 6 6 3.3037 3.6836 -0.0016 7 6 4.0654 2.5329 0.0052 8 6 3.4421 1.2866 -0.0005 9 6 4.2555 0.0474 -0.0005 10 6 5.0651 -0.2585 1.0911 11 6 5.8201 -1.4138 1.0866 12 6 5.7763 -2.2718 0.0009 13 6 4.9775 -1.9796 -1.0873 14 6 4.2130 -0.8219 -1.0970 15 8 3.4273 -0.5333 -2.1648 16 6 3.5214 -1.3510 -3.2326 17 1 4.1380 -2.2362 -3.1822 18 6 2.8268 -1.0553 -4.3954 19 7 2.0755 0.0230 -4.4567 20 14 2.9578 -2.1878 -5.8751 21 1 1.8973 -3.2247 -5.8004 22 1 2.7895 -1.3966 -7.1205 23 1 4.2906 -2.8425 -5.8810 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2149 2.3192 -0.0006 28 1 1.3321 4.5096 -0.0019 29 1 3.7876 4.6492 -0.0024 30 1 5.1434 2.5982 0.0097 31 1 5.1022 0.4080 1.9401 32 1 6.4470 -1.6499 1.9337 33 1 6.3735 -3.1717 0.0029 34 1 4.9481 -2.6528 -1.9313 35 1 1.5892 0.2296 -5.2702 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239541336.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:33 Heat of formation + Delta-G solvation = -9.899117 kcal Electronic energy + Delta-G solvation = -20398.860092 eV Core-core repulsion = 17328.172839 eV Total energy + Delta-G solvation = -3070.687253 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.73331 -38.57513 -36.76829 -36.14451 -32.32241 -31.91576 -29.60344 -29.08554 -28.08841 -26.66076 -25.26962 -22.83203 -21.65748 -21.12415 -20.37859 -17.86365 -17.64591 -16.79582 -15.56606 -15.43306 -15.11096 -14.60594 -14.36649 -14.21724 -13.87291 -13.51910 -13.42550 -13.00166 -12.66326 -12.49688 -12.02515 -11.66299 -11.59499 -11.32033 -11.10721 -10.89167 -10.79425 -10.65870 -10.54675 -10.41216 -10.21781 -9.26136 -8.79359 -8.46719 -7.99173 -7.50335 -7.02764 -6.39183 -3.96326 1.75206 2.01896 2.32960 2.49174 3.14515 3.15680 3.19859 3.91887 4.00135 4.31995 4.64748 5.14817 5.24575 5.34051 5.37474 5.48416 5.50298 5.66549 5.72910 5.76932 5.91251 5.93349 5.96956 6.13840 6.18218 6.36866 6.49954 6.74007 6.78300 6.88835 6.96860 7.05918 7.16164 7.24879 7.39872 7.44447 7.48124 7.89055 8.03986 8.08088 9.06097 9.79894 10.78095 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.008359 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.927800 B = 3348.975273 C = 4410.825184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.293 6.293 3 C 0.158 3.842 4 C -0.212 4.212 5 C -0.091 4.091 6 C -0.165 4.165 7 C -0.076 4.076 8 C -0.041 4.041 9 C -0.123 4.123 10 C -0.061 4.061 11 C -0.218 4.218 12 C -0.072 4.072 13 C -0.237 4.237 14 C 0.175 3.825 15 O -0.159 6.159 16 C -0.390 4.390 17 H 0.090 0.910 18 C 0.041 3.959 19 N -0.858 5.858 20 Si 0.936 3.064 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.268 1.268 24 H 0.055 0.945 25 H 0.093 0.907 26 H 0.045 0.955 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 2.464 8.283 8.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.205 6.205 3 C 0.112 3.888 4 C -0.231 4.231 5 C -0.109 4.109 6 C -0.183 4.183 7 C -0.094 4.094 8 C -0.042 4.042 9 C -0.124 4.124 10 C -0.080 4.080 11 C -0.237 4.237 12 C -0.090 4.090 13 C -0.257 4.257 14 C 0.120 3.880 15 O -0.061 6.061 16 C -0.467 4.467 17 H 0.107 0.893 18 C -0.163 4.163 19 N -0.492 5.492 20 Si 0.761 3.239 21 H -0.200 1.200 22 H -0.203 1.203 23 H -0.192 1.192 24 H 0.074 0.926 25 H 0.111 0.889 26 H 0.063 0.937 27 H 0.139 0.861 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.141 0.859 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.144 0.856 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.383 2.560 8.042 8.448 hybrid contribution -0.220 -0.534 -0.920 1.086 sum -0.603 2.026 7.122 7.429 Atomic orbital electron populations 1.22945 0.79564 1.03358 1.00480 1.86195 1.20220 1.26421 1.87668 1.19027 0.91603 0.84179 0.94011 1.21055 0.99538 0.92462 1.10006 1.20774 0.94583 0.96467 0.99057 1.20812 0.93814 0.97842 1.05873 1.20988 0.99456 0.90763 0.98175 1.17912 0.89354 0.93051 1.03887 1.17639 1.03884 0.95593 0.95313 1.20669 0.95079 0.96400 0.95827 1.20472 1.05799 0.97653 0.99750 1.20775 0.97059 0.97916 0.93249 1.21098 1.03729 0.99923 1.00923 1.19295 0.88790 0.91542 0.88377 1.84005 1.52071 1.49720 1.20312 1.21323 1.30421 1.05347 0.89585 0.89298 1.25225 0.95984 0.97091 0.98006 1.70069 1.27169 1.24016 1.27979 0.85782 0.78994 0.79170 0.79908 1.19998 1.20345 1.19239 0.92648 0.88886 0.93674 0.86081 0.86644 0.86563 0.85889 0.87122 0.87653 0.87641 0.85579 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.81 101.05 0.99 1.52 16 2 O -0.29 -6.38 9.49 -19.29 -0.18 -6.57 16 3 C 0.16 3.36 6.38 -38.86 -0.25 3.11 16 4 C -0.21 -3.85 9.03 -39.48 -0.36 -4.21 16 5 C -0.09 -1.48 10.03 -39.54 -0.40 -1.88 16 6 C -0.17 -2.72 10.03 -39.61 -0.40 -3.12 16 7 C -0.08 -1.41 9.73 -39.26 -0.38 -1.79 16 8 C -0.04 -0.89 4.95 -104.77 -0.52 -1.41 16 9 C -0.12 -2.76 4.95 -104.73 -0.52 -3.28 16 10 C -0.06 -1.18 9.73 -39.27 -0.38 -1.56 16 11 C -0.22 -3.96 10.03 -39.59 -0.40 -4.35 16 12 C -0.07 -1.38 10.03 -39.55 -0.40 -1.77 16 13 C -0.24 -5.38 9.16 -39.44 -0.36 -5.74 16 14 C 0.17 4.39 6.34 -38.74 -0.25 4.14 16 15 O -0.16 -4.58 8.76 0.33 0.00 -4.57 16 16 C -0.39 -11.03 9.49 30.88 0.29 -10.73 16 17 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 18 C 0.04 1.14 5.49 -17.52 -0.10 1.05 16 19 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16 20 Si 0.94 20.77 29.55 -169.99 -5.02 15.74 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H 0.05 0.93 7.66 -51.93 -0.40 0.53 16 25 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 27 H 0.12 1.90 6.30 -52.49 -0.33 1.57 16 28 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 30 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 31 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 32 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.13 2.83 5.64 -52.48 -0.30 2.54 16 35 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 LS Contribution 305.26 15.07 4.60 4.60 Total: -1.00 -32.26 305.26 -7.05 -39.31 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -3.79 Total: 5.94 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -3.41 Total: -30.03 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.76 Total: -24.42 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.18 Total: -11.14 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.26 -7.05 -39.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239541336.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.408 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds