Wall clock time and date at job start Mon Mar 30 2020 01:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35857 * 116.99928 * 2 1 4 4 C 1.38558 * 120.12109 * 359.97373 * 3 2 1 5 5 C 1.38199 * 120.07014 * 180.02562 * 4 3 2 6 6 C 1.38391 * 120.30993 * 0.02562 * 5 4 3 7 7 C 1.38004 * 120.24347 * 359.67333 * 6 5 4 8 8 C 1.39345 * 119.92116 * 0.62052 * 7 6 5 9 9 C 1.48236 * 120.14843 * 179.67444 * 8 7 6 10 10 C 1.39305 * 120.16041 * 64.73299 * 9 8 7 11 11 C 1.38018 * 119.94327 * 179.97438 * 10 9 8 12 12 C 1.38447 * 120.26813 * 359.97438 * 11 10 9 13 13 C 1.38120 * 120.33099 * 0.02562 * 12 11 10 14 14 C 1.38743 * 120.05215 * 359.97438 * 13 12 11 15 15 O 1.35672 * 120.13820 * 180.02562 * 14 13 12 16 16 C 1.34816 * 116.99682 * 354.41364 * 15 14 13 17 17 H 1.07996 * 120.00343 * 5.05229 * 16 15 14 18 18 C 1.38642 * 119.99841 * 185.06502 * 16 15 14 19 19 N 1.31567 * 119.99713 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99948 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47691 * 89.99574 * 20 18 16 22 22 H 1.48504 * 109.47074 * 209.99559 * 20 18 16 23 23 H 1.48496 * 109.47234 * 329.98964 * 20 18 16 24 24 H 1.09005 * 109.47294 * 60.00210 * 1 2 3 25 25 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47322 * 300.00338 * 1 2 3 27 27 H 1.08002 * 119.96661 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.84324 * 179.97438 * 5 4 3 29 29 H 1.08009 * 119.87800 * 179.97438 * 6 5 4 30 30 H 1.07997 * 120.03619 * 180.30143 * 7 6 5 31 31 H 1.07997 * 120.03169 * 359.94653 * 10 9 8 32 32 H 1.07996 * 119.86737 * 180.02562 * 11 10 9 33 33 H 1.07999 * 119.83371 * 179.72279 * 12 11 10 34 34 H 1.08003 * 119.97486 * 179.97438 * 13 12 11 35 35 H 0.97003 * 119.99369 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 1.2935 2.3741 -0.0005 5 6 1.9220 3.6049 -0.0011 6 6 3.3037 3.6836 -0.0016 7 6 4.0654 2.5329 0.0052 8 6 3.4421 1.2866 -0.0005 9 6 4.2555 0.0474 -0.0005 10 6 5.0651 -0.2585 1.0911 11 6 5.8201 -1.4138 1.0866 12 6 5.7763 -2.2718 0.0009 13 6 4.9775 -1.9796 -1.0873 14 6 4.2130 -0.8219 -1.0970 15 8 3.4273 -0.5333 -2.1648 16 6 3.5214 -1.3510 -3.2326 17 1 4.1380 -2.2362 -3.1822 18 6 2.8268 -1.0553 -4.3954 19 7 2.0755 0.0230 -4.4567 20 14 2.9578 -2.1878 -5.8751 21 1 1.8973 -3.2247 -5.8004 22 1 2.7895 -1.3966 -7.1205 23 1 4.2906 -2.8425 -5.8810 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2149 2.3192 -0.0006 28 1 1.3321 4.5096 -0.0019 29 1 3.7876 4.6492 -0.0024 30 1 5.1434 2.5982 0.0097 31 1 5.1022 0.4080 1.9401 32 1 6.4470 -1.6499 1.9337 33 1 6.3735 -3.1717 0.0029 34 1 4.9481 -2.6528 -1.9313 35 1 1.5892 0.2296 -5.2702 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239541336.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:33 Heat of formation + Delta-G solvation = -28.967671 kcal Electronic energy + Delta-G solvation = -20399.686966 eV Core-core repulsion = 17328.172839 eV Total energy + Delta-G solvation = -3071.514128 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.25324 -40.23840 -38.29024 -37.79721 -34.26330 -33.47755 -30.99685 -30.71281 -29.65408 -28.03661 -27.26050 -24.33320 -23.23146 -22.67575 -21.91372 -19.73664 -19.18175 -18.48049 -17.09282 -16.90699 -16.59196 -16.31582 -16.08231 -15.67780 -15.34587 -15.30691 -15.00520 -14.49593 -14.32165 -14.06988 -13.55735 -13.39398 -13.00896 -12.93080 -12.56871 -12.50507 -12.30800 -12.26185 -12.12183 -11.92291 -11.70962 -11.07522 -10.76959 -9.94752 -9.51488 -9.04290 -8.70522 -8.41738 -6.07074 0.28295 0.58812 0.75693 0.86855 1.33137 1.42396 1.49571 2.18269 2.54060 2.84661 2.95055 3.23935 3.58350 3.86888 4.02202 4.15019 4.25213 4.27857 4.31069 4.36429 4.48048 4.58732 4.64640 4.66159 4.75514 4.81322 5.07609 5.13510 5.17023 5.26737 5.48890 5.53895 5.63877 5.73326 5.75621 5.81171 6.01058 6.07270 6.28910 6.64586 7.02506 7.88625 8.80285 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.008359 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.927800 B = 3348.975273 C = 4410.825184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.330 6.330 3 C 0.127 3.873 4 C -0.221 4.221 5 C -0.087 4.087 6 C -0.161 4.161 7 C -0.086 4.086 8 C -0.081 4.081 9 C -0.130 4.130 10 C -0.065 4.065 11 C -0.194 4.194 12 C -0.072 4.072 13 C -0.255 4.255 14 C 0.134 3.866 15 O -0.205 6.205 16 C -0.413 4.413 17 H 0.094 0.906 18 C -0.017 4.017 19 N -0.911 5.911 20 Si 1.011 2.989 21 H -0.265 1.265 22 H -0.272 1.272 23 H -0.256 1.256 24 H 0.044 0.956 25 H 0.103 0.897 26 H 0.077 0.923 27 H 0.140 0.860 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.116 0.884 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.043 2.789 9.861 10.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.243 6.243 3 C 0.081 3.919 4 C -0.240 4.240 5 C -0.105 4.105 6 C -0.179 4.179 7 C -0.104 4.104 8 C -0.082 4.082 9 C -0.131 4.131 10 C -0.083 4.083 11 C -0.212 4.212 12 C -0.090 4.090 13 C -0.275 4.275 14 C 0.082 3.918 15 O -0.110 6.110 16 C -0.489 4.489 17 H 0.112 0.888 18 C -0.215 4.215 19 N -0.549 5.549 20 Si 0.831 3.169 21 H -0.190 1.190 22 H -0.196 1.196 23 H -0.180 1.180 24 H 0.063 0.937 25 H 0.122 0.878 26 H 0.095 0.905 27 H 0.158 0.842 28 H 0.172 0.828 29 H 0.172 0.828 30 H 0.154 0.846 31 H 0.159 0.841 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.134 0.866 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.818 2.873 9.673 10.124 hybrid contribution -0.468 -0.583 -1.107 1.336 sum 0.350 2.289 8.566 8.873 Atomic orbital electron populations 1.23145 0.77666 1.04481 1.01425 1.86121 1.22487 1.27596 1.88139 1.19385 0.92116 0.84882 0.95474 1.21403 1.00592 0.92385 1.09621 1.21287 0.95099 0.97117 0.97014 1.21272 0.94024 0.98664 1.03978 1.21263 1.00421 0.90612 0.98100 1.18244 0.89926 0.93822 1.06168 1.18088 1.04040 0.95773 0.95203 1.21116 0.94183 0.97381 0.95644 1.21056 1.04104 0.95941 1.00141 1.21188 0.96267 0.99406 0.92171 1.21259 1.04672 0.99367 1.02169 1.19886 0.89906 0.93321 0.88656 1.83984 1.54666 1.50901 1.21425 1.21770 1.30872 1.05860 0.90406 0.88830 1.26411 0.95377 0.98823 1.00897 1.70218 1.29178 1.26550 1.28986 0.84697 0.79591 0.77051 0.75576 1.18988 1.19642 1.17960 0.93744 0.87821 0.90465 0.84239 0.82754 0.82834 0.84631 0.84110 0.83114 0.83909 0.86618 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.81 113.37 1.11 2.05 16 2 O -0.33 -15.10 9.49 -91.94 -0.87 -15.97 16 3 C 0.13 5.56 6.38 22.74 0.15 5.71 16 4 C -0.22 -7.99 9.03 22.34 0.20 -7.79 16 5 C -0.09 -2.68 10.03 22.30 0.22 -2.45 16 6 C -0.16 -4.97 10.03 22.25 0.22 -4.75 16 7 C -0.09 -3.15 9.73 22.48 0.22 -2.94 16 8 C -0.08 -3.56 4.95 -19.96 -0.10 -3.65 16 9 C -0.13 -5.92 4.95 -19.94 -0.10 -6.02 16 10 C -0.07 -2.39 9.73 22.47 0.22 -2.17 16 11 C -0.19 -6.37 10.03 22.27 0.22 -6.15 16 12 C -0.07 -2.62 10.03 22.29 0.22 -2.40 16 13 C -0.26 -11.80 9.16 22.36 0.20 -11.59 16 14 C 0.13 7.00 6.34 22.82 0.14 7.15 16 15 O -0.20 -12.53 8.76 -21.74 -0.19 -12.72 16 16 C -0.41 -24.64 9.49 67.92 0.64 -24.00 16 17 H 0.09 5.22 5.21 -2.91 -0.02 5.20 16 18 C -0.02 -0.99 5.49 84.83 0.47 -0.52 16 19 N -0.91 -56.39 13.67 21.61 0.30 -56.10 16 20 Si 1.01 43.97 29.55 68.60 2.03 45.99 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 24 H 0.04 1.57 7.66 -2.38 -0.02 1.55 16 25 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 26 H 0.08 2.05 7.66 -2.39 -0.02 2.04 16 27 H 0.14 4.31 6.30 -2.91 -0.02 4.29 16 28 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 29 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 30 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 32 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 33 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 34 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16 35 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -76.02 305.26 6.42 -69.60 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 1.10 Total: 28.72 kcal Atomic # 6 Polarization: -63.58 SS G_CDS: 4.05 Total: -59.53 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.30 Total: -56.10 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -1.06 Total: -28.69 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -76.02 6.42 -69.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239541336.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.634 kcal (2) G-P(sol) polarization free energy of solvation -76.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds