Wall clock time and date at job start Mon Mar 30 2020 01:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35998 * 116.99523 * 2 1 4 4 C 1.38175 * 120.00068 * 359.97438 * 3 2 1 5 5 C 1.39713 * 119.84807 * 180.02562 * 4 3 2 6 6 C 1.47774 * 120.07171 * 179.97438 * 5 4 3 7 7 C 1.39243 * 120.33870 * 310.00118 * 6 5 4 8 8 C 1.38021 * 119.97429 * 180.02562 * 7 6 5 9 9 C 1.38963 * 120.68718 * 0.02562 * 8 7 6 10 10 C 1.36399 * 120.69815 * 359.97438 * 9 8 7 11 11 C 1.40759 * 119.99287 * 359.68428 * 10 9 8 12 12 C 1.40841 * 120.34053 * 180.32343 * 11 10 9 13 13 H 1.07999 * 120.00794 * 153.75531 * 12 11 10 14 14 C 1.40044 * 119.99690 * 333.74803 * 12 11 10 15 15 N 1.30791 * 119.99894 * 342.87839 * 14 12 11 16 16 Si 1.86800 * 119.99992 * 162.86867 * 14 12 11 17 17 H 1.48498 * 109.47069 * 60.00175 * 16 14 12 18 18 H 1.48498 * 109.47428 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47074 * 300.00536 * 16 14 12 20 20 C 1.39742 * 119.86001 * 0.02562 * 5 4 3 21 21 C 1.37847 * 119.99371 * 0.02562 * 20 5 4 22 22 C 1.38819 * 120.14667 * 359.72589 * 21 20 5 23 23 O 1.35899 * 119.92449 * 180.27778 * 22 21 20 24 24 H 1.09002 * 109.47964 * 300.00274 * 1 2 3 25 25 H 1.09001 * 109.47161 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47143 * 60.00418 * 1 2 3 27 27 H 1.07997 * 120.07498 * 359.97438 * 4 3 2 28 28 H 1.07998 * 120.01599 * 0.02562 * 7 6 5 29 29 H 1.08008 * 119.65480 * 180.02562 * 8 7 6 30 30 H 1.08001 * 119.65510 * 179.97438 * 9 8 7 31 31 H 1.08002 * 120.00795 * 180.02562 * 10 9 8 32 32 H 0.97001 * 119.99935 * 179.97438 * 15 14 12 33 33 H 1.07993 * 120.00352 * 179.97438 * 20 5 4 34 34 H 1.07998 * 119.93025 * 180.02562 * 21 20 5 35 35 H 0.96703 * 113.99174 * 270.27213 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2118 0.0000 4 6 1.2936 2.3706 -0.0005 5 6 1.9311 3.6138 -0.0011 6 6 1.1310 4.8562 -0.0022 7 6 0.1011 5.0287 -0.9233 8 6 -0.6410 6.1924 -0.9180 9 6 -0.3723 7.2007 -0.0004 10 6 0.6300 7.0610 0.9141 11 6 1.4004 5.8832 0.9393 12 6 2.4326 5.7284 1.8849 13 1 2.7324 4.7399 2.2003 14 6 3.0705 6.8563 2.4161 15 7 2.9612 8.0130 1.8154 16 14 4.0773 6.7088 3.9827 17 1 5.1813 5.7382 3.7720 18 1 4.6443 8.0357 4.3335 19 1 3.2061 6.2353 5.0882 20 6 3.3270 3.6799 -0.0016 21 6 4.0718 2.5200 -0.0021 22 6 3.4384 1.2847 0.0036 23 8 4.1771 0.1441 0.0088 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 0.2150 2.3154 -0.0014 28 1 -0.1169 4.2523 -1.6417 29 1 -1.4390 6.3206 -1.6346 30 1 -0.9633 8.1046 -0.0114 31 1 0.8289 7.8516 1.6225 32 1 3.4028 8.7943 2.1835 33 1 3.8221 4.6396 -0.0025 34 1 5.1505 2.5723 -0.0021 35 1 4.3943 -0.1877 -0.8732 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240614133.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:10 Heat of formation + Delta-G solvation = -43.132106 kcal Electronic energy + Delta-G solvation = -19957.051234 eV Core-core repulsion = 16884.922890 eV Total energy + Delta-G solvation = -3072.128344 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.88566 -37.92629 -37.28058 -35.70382 -33.80985 -31.04400 -29.99730 -29.35663 -28.00362 -26.62180 -25.31542 -22.37842 -21.79555 -20.74980 -19.93541 -18.18754 -17.38970 -16.92253 -15.83635 -15.55041 -15.39889 -14.85573 -14.64726 -14.08624 -13.79001 -13.53076 -13.33888 -12.82248 -12.58447 -11.97820 -11.81822 -11.69014 -11.58768 -11.20221 -11.16878 -11.07205 -10.72844 -10.57504 -10.52552 -10.07479 -9.68968 -9.51164 -9.28025 -8.33541 -7.75772 -7.50209 -7.18018 -6.86449 -4.45700 1.67157 1.99696 2.72443 2.93982 3.01497 3.05651 3.18140 3.56816 3.85243 4.26624 4.52806 4.68618 5.21180 5.34076 5.41266 5.52557 5.63494 5.66275 5.93598 6.04893 6.09452 6.14094 6.28489 6.42717 6.56526 6.78167 6.91800 6.98570 7.08538 7.19896 7.27706 7.37630 7.47693 7.60894 7.80241 7.93677 7.99609 8.15233 8.17095 8.49895 8.74140 8.83474 10.03330 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.007191 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.511972 B = 3892.791776 C = 5170.182011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.096 3.904 4 C -0.206 4.206 5 C 0.056 3.944 6 C -0.195 4.195 7 C -0.069 4.069 8 C -0.245 4.245 9 C -0.100 4.100 10 C -0.158 4.158 11 C 0.133 3.867 12 C -0.449 4.449 13 H 0.084 0.916 14 C 0.078 3.922 15 N -0.785 5.785 16 Si 0.905 3.095 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.118 4.118 21 C -0.112 4.112 22 C 0.039 3.961 23 O -0.490 6.490 24 H 0.054 0.946 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.125 0.875 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.284 0.716 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 -7.693 -2.906 8.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.051 3.949 4 C -0.224 4.224 5 C 0.055 3.945 6 C -0.196 4.196 7 C -0.087 4.087 8 C -0.264 4.264 9 C -0.118 4.118 10 C -0.177 4.177 11 C 0.130 3.870 12 C -0.478 4.478 13 H 0.102 0.898 14 C -0.142 4.142 15 N -0.409 5.409 16 Si 0.729 3.271 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.136 4.136 21 C -0.130 4.130 22 C -0.006 4.006 23 O -0.298 6.298 24 H 0.073 0.927 25 H 0.112 0.888 26 H 0.071 0.929 27 H 0.143 0.857 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.135 0.865 32 H 0.095 0.905 33 H 0.154 0.846 34 H 0.144 0.856 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.739 -7.568 -2.268 7.935 hybrid contribution 0.200 0.203 0.161 0.327 sum -0.539 -7.365 -2.107 7.679 Atomic orbital electron populations 1.22983 0.79219 1.03090 1.01472 1.86065 1.20661 1.26977 1.89320 1.19263 0.91522 0.84360 0.99721 1.21287 0.99590 0.91309 1.10254 1.18677 0.92598 0.91743 0.91444 1.18555 1.02405 0.96492 1.02197 1.20552 0.94755 0.96264 0.97116 1.20264 1.04774 0.96681 1.04684 1.20486 0.97809 0.97053 0.96467 1.21032 0.96110 0.99731 1.00836 1.17513 0.90504 0.89703 0.89282 1.19583 1.14794 0.93969 1.19432 0.89769 1.25953 0.96121 0.94591 0.97495 1.69795 1.34565 1.00902 1.35688 0.86398 0.80300 0.78517 0.81916 1.18618 1.20225 1.18675 1.21291 0.93375 0.98065 1.00882 1.21115 0.99898 0.90953 1.01042 1.17690 0.85922 0.86121 1.10889 1.84880 1.72352 1.40083 1.32484 0.92727 0.88845 0.92913 0.85682 0.89307 0.89398 0.89424 0.86450 0.90528 0.84622 0.85584 0.77352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.32 -5.28 10.28 -34.37 -0.35 -5.63 16 3 C 0.10 1.77 6.69 -39.17 -0.26 1.51 16 4 C -0.21 -3.94 8.50 -39.05 -0.33 -4.27 16 5 C 0.06 1.19 4.92 -104.89 -0.52 0.67 16 6 C -0.19 -4.56 5.52 -104.22 -0.58 -5.13 16 7 C -0.07 -1.50 9.51 -39.29 -0.37 -1.87 16 8 C -0.24 -5.30 10.03 -39.39 -0.40 -5.70 16 9 C -0.10 -2.26 9.96 -39.98 -0.40 -2.65 16 10 C -0.16 -3.93 8.62 -39.29 -0.34 -4.27 16 11 C 0.13 3.36 5.55 -106.56 -0.59 2.77 16 12 C -0.45 -11.25 7.13 -37.92 -0.27 -11.52 16 13 H 0.08 2.11 6.65 -52.49 -0.35 1.76 16 14 C 0.08 1.85 5.14 -17.32 -0.09 1.77 16 15 N -0.79 -19.22 11.03 55.55 0.61 -18.61 16 16 Si 0.90 18.19 29.59 -169.99 -5.03 13.15 16 17 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 18 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 20 C -0.12 -2.41 8.00 -39.16 -0.31 -2.72 16 21 C -0.11 -2.02 9.96 -39.51 -0.39 -2.41 16 22 C 0.04 0.70 6.73 -38.93 -0.26 0.44 16 23 O -0.49 -7.92 13.27 -34.06 -0.45 -8.38 16 24 H 0.05 0.68 7.66 -51.93 -0.40 0.28 16 25 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.61 7.66 -51.93 -0.40 0.22 16 27 H 0.13 2.22 6.27 -52.49 -0.33 1.89 16 28 H 0.09 1.73 8.04 -52.49 -0.42 1.31 16 29 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.12 2.99 6.26 -52.49 -0.33 2.66 16 32 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 33 H 0.14 2.91 7.33 -52.49 -0.38 2.52 16 34 H 0.13 1.98 8.06 -52.49 -0.42 1.55 16 35 H 0.37 4.17 9.06 45.56 0.41 4.59 16 LS Contribution 301.12 15.07 4.54 4.54 Total: -1.00 -28.04 301.12 -7.83 -35.87 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -3.02 Total: 11.11 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: -4.12 Total: -32.06 kcal Atomic # 7 Polarization: -19.22 SS G_CDS: 0.61 Total: -18.61 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.81 Total: -14.01 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.04 -7.83 -35.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240614133.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.262 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds