Wall clock time and date at job start Mon Mar 30 2020 01:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35998 * 116.99523 * 2 1 4 4 C 1.38175 * 120.00068 * 359.97438 * 3 2 1 5 5 C 1.39713 * 119.84807 * 180.02562 * 4 3 2 6 6 C 1.47774 * 120.07171 * 179.97438 * 5 4 3 7 7 C 1.39243 * 120.33870 * 310.00118 * 6 5 4 8 8 C 1.38021 * 119.97429 * 180.02562 * 7 6 5 9 9 C 1.38963 * 120.68718 * 0.02562 * 8 7 6 10 10 C 1.36399 * 120.69815 * 359.97438 * 9 8 7 11 11 C 1.40759 * 119.99287 * 359.68428 * 10 9 8 12 12 C 1.40841 * 120.34053 * 180.32343 * 11 10 9 13 13 H 1.07999 * 120.00794 * 153.75531 * 12 11 10 14 14 C 1.40044 * 119.99690 * 333.74803 * 12 11 10 15 15 N 1.30791 * 119.99894 * 342.87839 * 14 12 11 16 16 Si 1.86800 * 119.99992 * 162.86867 * 14 12 11 17 17 H 1.48498 * 109.47069 * 60.00175 * 16 14 12 18 18 H 1.48498 * 109.47428 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47074 * 300.00536 * 16 14 12 20 20 C 1.39742 * 119.86001 * 0.02562 * 5 4 3 21 21 C 1.37847 * 119.99371 * 0.02562 * 20 5 4 22 22 C 1.38819 * 120.14667 * 359.72589 * 21 20 5 23 23 O 1.35899 * 119.92449 * 180.27778 * 22 21 20 24 24 H 1.09002 * 109.47964 * 300.00274 * 1 2 3 25 25 H 1.09001 * 109.47161 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47143 * 60.00418 * 1 2 3 27 27 H 1.07997 * 120.07498 * 359.97438 * 4 3 2 28 28 H 1.07998 * 120.01599 * 0.02562 * 7 6 5 29 29 H 1.08008 * 119.65480 * 180.02562 * 8 7 6 30 30 H 1.08001 * 119.65510 * 179.97438 * 9 8 7 31 31 H 1.08002 * 120.00795 * 180.02562 * 10 9 8 32 32 H 0.97001 * 119.99935 * 179.97438 * 15 14 12 33 33 H 1.07993 * 120.00352 * 179.97438 * 20 5 4 34 34 H 1.07998 * 119.93025 * 180.02562 * 21 20 5 35 35 H 0.96703 * 113.99174 * 270.27213 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2118 0.0000 4 6 1.2936 2.3706 -0.0005 5 6 1.9311 3.6138 -0.0011 6 6 1.1310 4.8562 -0.0022 7 6 0.1011 5.0287 -0.9233 8 6 -0.6410 6.1924 -0.9180 9 6 -0.3723 7.2007 -0.0004 10 6 0.6300 7.0610 0.9141 11 6 1.4004 5.8832 0.9393 12 6 2.4326 5.7284 1.8849 13 1 2.7324 4.7399 2.2003 14 6 3.0705 6.8563 2.4161 15 7 2.9612 8.0130 1.8154 16 14 4.0773 6.7088 3.9827 17 1 5.1813 5.7382 3.7720 18 1 4.6443 8.0357 4.3335 19 1 3.2061 6.2353 5.0882 20 6 3.3270 3.6799 -0.0016 21 6 4.0718 2.5200 -0.0021 22 6 3.4384 1.2847 0.0036 23 8 4.1771 0.1441 0.0088 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 0.2150 2.3154 -0.0014 28 1 -0.1169 4.2523 -1.6417 29 1 -1.4390 6.3206 -1.6346 30 1 -0.9633 8.1046 -0.0114 31 1 0.8289 7.8516 1.6225 32 1 3.4028 8.7943 2.1835 33 1 3.8221 4.6396 -0.0025 34 1 5.1505 2.5723 -0.0021 35 1 4.3943 -0.1877 -0.8732 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240614133.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:09 Heat of formation + Delta-G solvation = -58.563511 kcal Electronic energy + Delta-G solvation = -19957.720390 eV Core-core repulsion = 16884.922890 eV Total energy + Delta-G solvation = -3072.797500 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.27966 -39.57191 -38.60438 -37.17238 -35.59176 -32.65953 -31.66895 -30.89876 -29.43793 -27.91369 -27.08508 -23.91789 -23.31866 -22.43403 -21.55710 -19.57227 -19.11649 -18.36700 -17.22552 -17.12851 -16.80672 -16.38885 -16.03400 -15.70786 -15.33416 -14.92793 -14.81259 -14.44019 -14.27720 -13.58189 -13.26118 -13.23809 -13.00715 -12.81695 -12.74341 -12.59200 -12.28128 -12.13858 -11.95041 -11.46454 -11.39782 -11.23488 -11.05830 -9.87313 -9.36117 -9.26026 -8.81921 -8.59570 -6.30642 0.15737 0.51997 1.00482 1.19159 1.37115 1.46347 1.53001 2.18481 2.35871 2.71746 2.81070 3.34773 3.72658 3.98957 4.06988 4.34593 4.38731 4.44597 4.49524 4.54180 4.60178 4.69063 4.74680 4.85725 5.04721 5.11951 5.25433 5.29222 5.42849 5.47850 5.68524 5.77303 5.81248 6.05272 6.14223 6.19029 6.33944 6.38242 6.67820 6.91911 6.97101 7.02377 8.28936 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.007191 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.511972 B = 3892.791776 C = 5170.182011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.095 3.905 4 C -0.202 4.202 5 C 0.029 3.971 6 C -0.200 4.200 7 C -0.076 4.076 8 C -0.242 4.242 9 C -0.106 4.106 10 C -0.185 4.185 11 C 0.102 3.898 12 C -0.473 4.473 13 H 0.074 0.926 14 C 0.043 3.957 15 N -0.816 5.816 16 Si 0.966 3.034 17 H -0.260 1.260 18 H -0.265 1.265 19 H -0.264 1.264 20 C -0.130 4.130 21 C -0.108 4.108 22 C 0.046 3.954 23 O -0.495 6.495 24 H 0.052 0.948 25 H 0.126 0.874 26 H 0.062 0.938 27 H 0.137 0.863 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.289 0.711 33 H 0.114 0.886 34 H 0.149 0.851 35 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.118 -9.534 -3.405 10.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.238 6.238 3 C 0.050 3.950 4 C -0.221 4.221 5 C 0.029 3.971 6 C -0.201 4.201 7 C -0.094 4.094 8 C -0.261 4.261 9 C -0.124 4.124 10 C -0.205 4.205 11 C 0.099 3.901 12 C -0.502 4.502 13 H 0.092 0.908 14 C -0.173 4.173 15 N -0.441 5.441 16 Si 0.788 3.212 17 H -0.184 1.184 18 H -0.190 1.190 19 H -0.189 1.189 20 C -0.149 4.149 21 C -0.126 4.126 22 C 0.000 4.000 23 O -0.306 6.306 24 H 0.071 0.929 25 H 0.144 0.856 26 H 0.081 0.919 27 H 0.155 0.845 28 H 0.133 0.867 29 H 0.137 0.863 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.167 0.833 35 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -0.993 -9.422 -2.794 9.878 hybrid contribution 0.204 0.595 0.190 0.657 sum -0.789 -8.827 -2.604 9.237 Atomic orbital electron populations 1.23315 0.77002 1.05473 1.01838 1.86063 1.22919 1.25849 1.88962 1.19340 0.91853 0.84772 0.99075 1.21318 1.00251 0.90752 1.09778 1.18694 0.92901 0.91852 0.93700 1.18896 1.02707 0.96852 1.01648 1.20893 0.94283 0.97123 0.97143 1.20654 1.05034 0.95968 1.04424 1.20772 0.97306 0.98304 0.96003 1.21023 0.97689 0.99765 1.01988 1.17857 0.91175 0.90726 0.90306 1.19609 1.15812 0.93967 1.20795 0.90782 1.26618 0.96859 0.94036 0.99823 1.69838 1.35769 1.01563 1.36978 0.85475 0.78757 0.78867 0.78145 1.18428 1.18955 1.18855 1.21147 0.93392 0.98072 1.02272 1.21269 1.00942 0.90262 1.00130 1.17773 0.86197 0.86590 1.09393 1.84807 1.71907 1.39140 1.34727 0.92924 0.85566 0.91942 0.84519 0.86734 0.86263 0.87236 0.88115 0.89975 0.86767 0.83329 0.74430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.32 -9.94 10.28 -79.53 -0.82 -10.75 16 3 C 0.10 3.32 6.69 22.54 0.15 3.47 16 4 C -0.20 -7.52 8.50 22.61 0.19 -7.33 16 5 C 0.03 1.23 4.92 -20.04 -0.10 1.13 16 6 C -0.20 -9.45 5.52 -19.60 -0.11 -9.56 16 7 C -0.08 -3.26 9.51 22.46 0.21 -3.05 16 8 C -0.24 -10.11 10.03 22.39 0.22 -9.89 16 9 C -0.11 -4.77 9.96 22.01 0.22 -4.55 16 10 C -0.19 -9.52 8.62 22.46 0.19 -9.33 16 11 C 0.10 5.33 5.55 -21.12 -0.12 5.22 16 12 C -0.47 -24.67 7.13 23.35 0.17 -24.50 16 13 H 0.07 3.88 6.65 -2.91 -0.02 3.86 16 14 C 0.04 2.11 5.14 85.29 0.44 2.55 16 15 N -0.82 -41.42 11.03 21.84 0.24 -41.18 16 16 Si 0.97 38.05 29.59 68.60 2.03 40.08 16 17 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 18 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 20 C -0.13 -5.40 8.00 22.54 0.18 -5.22 16 21 C -0.11 -3.78 9.96 22.32 0.22 -3.56 16 22 C 0.05 1.56 6.73 22.69 0.15 1.71 16 23 O -0.49 -14.54 13.27 -78.42 -1.04 -15.59 16 24 H 0.05 1.19 7.66 -2.39 -0.02 1.17 16 25 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 1.27 7.66 -2.39 -0.02 1.25 16 27 H 0.14 4.63 6.27 -2.91 -0.02 4.61 16 28 H 0.11 4.22 8.04 -2.91 -0.02 4.19 16 29 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 30 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 31 H 0.10 5.40 6.26 -2.91 -0.02 5.38 16 32 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 33 H 0.11 5.15 7.33 -2.91 -0.02 5.13 16 34 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.40 7.57 9.06 -74.06 -0.67 6.90 16 Total: -1.00 -61.08 301.12 4.01 -57.07 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.45 Total: 31.76 kcal Atomic # 6 Polarization: -64.54 SS G_CDS: 3.14 Total: -61.39 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.24 Total: -41.18 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -1.86 Total: -26.34 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -61.08 4.01 -57.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240614133.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.490 kcal (2) G-P(sol) polarization free energy of solvation -61.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds