Wall clock time and date at job start Mon Mar 30 2020 01:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86806 * 119.99871 * 2 1 4 4 H 1.48494 * 109.46770 * 269.99588 * 3 2 1 5 5 H 1.48497 * 109.46968 * 29.99764 * 3 2 1 6 6 H 1.48495 * 109.46914 * 149.99965 * 3 2 1 7 7 C 1.39928 * 120.00428 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00729 * 197.92384 * 7 2 1 9 9 C 1.41427 * 119.99381 * 17.91690 * 7 2 1 10 10 C 1.40793 * 120.18824 * 24.47645 * 9 7 2 11 11 C 1.37670 * 119.97667 * 179.97438 * 10 9 7 12 12 C 1.38442 * 120.38198 * 0.05898 * 11 10 9 13 13 C 1.39661 * 120.37589 * 359.97438 * 12 11 10 14 14 C 1.48494 * 119.99668 * 179.97438 * 13 12 11 15 15 C 1.40833 * 126.22629 * 179.97438 * 14 13 12 16 16 N 1.30672 * 108.10061 * 179.97438 * 15 14 13 17 17 N 1.40010 * 108.52503 * 0.02562 * 16 15 14 18 18 C 1.46494 * 125.89825 * 180.02562 * 17 16 15 19 19 C 1.54034 * 113.81767 * 193.52837 * 18 17 16 20 20 O 1.44449 * 85.42630 * 223.23171 * 19 18 17 21 21 C 1.44180 * 93.37769 * 24.08993 * 20 19 18 22 22 C 1.34832 * 108.20689 * 359.75151 * 17 16 15 23 23 C 1.38724 * 120.01002 * 359.97438 * 13 12 11 24 24 H 0.96995 * 120.00148 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.00889 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.81345 * 180.02562 * 11 10 9 27 27 H 1.07994 * 119.81702 * 180.02562 * 12 11 10 28 28 H 1.08004 * 125.95154 * 359.97438 * 15 14 13 29 29 H 1.09004 * 112.99450 * 325.35304 * 18 17 16 30 30 H 1.08999 * 113.86858 * 337.34288 * 19 18 17 31 31 H 1.09003 * 113.86230 * 109.04667 * 19 18 17 32 32 H 1.08994 * 113.86528 * 221.76231 * 21 20 19 33 33 H 1.09002 * 113.86479 * 90.05371 * 21 20 19 34 34 H 1.08003 * 126.19278 * 180.26338 * 22 17 16 35 35 H 1.08007 * 120.18344 * 179.75022 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2118 0.0005 8 1 3.0487 -1.2344 0.2884 9 6 1.3523 -2.4070 -0.3757 10 6 0.2224 -2.3608 -1.2145 11 6 -0.4122 -3.5270 -1.5785 12 6 0.0531 -4.7488 -1.1234 13 6 1.1722 -4.8125 -0.2902 14 6 1.6638 -6.1276 0.1935 15 6 2.7736 -6.3436 1.0332 16 7 2.8859 -7.6298 1.2347 17 7 1.8611 -8.2806 0.5370 18 6 1.6307 -9.7268 0.5005 19 6 0.6465 -10.1724 -0.5974 20 8 0.0848 -11.0335 0.4172 21 6 0.5647 -10.2123 1.5008 22 6 1.1193 -7.3458 -0.0907 23 6 1.8245 -3.6473 0.0857 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1463 -1.4107 -1.5722 26 1 -1.2785 -3.4885 -2.2224 27 1 -0.4515 -5.6580 -1.4150 28 1 3.4194 -5.5794 1.4398 29 1 2.5539 -10.3058 0.5255 30 1 -0.0289 -9.3844 -0.9305 31 1 1.1179 -10.7085 -1.4211 32 1 0.9713 -10.7800 2.3377 33 1 -0.1357 -9.4365 1.8099 34 1 0.2522 -7.5286 -0.7081 35 1 2.6878 -3.6930 0.7332 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240785418.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:09 Heat of formation + Delta-G solvation = 85.866601 kcal Electronic energy + Delta-G solvation = -19235.075859 eV Core-core repulsion = 16200.834070 eV Total energy + Delta-G solvation = -3034.241789 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.44782 -39.96945 -37.32433 -33.82663 -32.75374 -30.91688 -29.85380 -28.77302 -27.21254 -26.90810 -25.23126 -22.71249 -21.67132 -20.67732 -19.82171 -19.29641 -17.86008 -16.88906 -16.70923 -16.15724 -15.42846 -14.88340 -14.51049 -14.26422 -14.11838 -13.49087 -13.24678 -13.14031 -12.56143 -12.33870 -12.09895 -11.93637 -11.74069 -11.56951 -11.16379 -11.09388 -10.70848 -10.46396 -10.44005 -10.16184 -9.66930 -9.37252 -9.21890 -9.19820 -8.65914 -7.46549 -6.82719 -6.71820 -4.34656 1.92059 2.51967 2.57943 2.82976 3.08653 3.12172 3.13889 3.21159 3.71340 3.79662 3.95092 4.46658 4.56321 4.69687 4.85760 5.00606 5.06904 5.18203 5.43025 5.51970 5.59266 5.74543 5.85362 5.92452 6.22742 6.37212 6.42974 6.84929 6.95955 7.05865 7.13662 7.30587 7.37916 7.60575 7.86136 7.94613 8.04684 8.10853 8.30800 8.64532 8.91281 8.97744 10.20948 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.041285 B = 0.003706 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.049455 B = 7553.001689 C = 8019.956480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.465 4.465 8 H 0.078 0.922 9 C 0.111 3.889 10 C -0.163 4.163 11 C -0.105 4.105 12 C -0.232 4.232 13 C 0.005 3.995 14 C -0.154 4.154 15 C 0.063 3.937 16 N -0.305 5.305 17 N -0.379 5.379 18 C 0.101 3.899 19 C 0.033 3.967 20 O -0.372 6.372 21 C 0.029 3.971 22 C 0.041 3.959 23 C -0.210 4.210 24 H 0.280 0.720 25 H 0.117 0.883 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.185 0.815 29 H 0.130 0.870 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.171 0.829 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 -13.142 -0.355 13.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.495 4.495 8 H 0.096 0.904 9 C 0.109 3.891 10 C -0.182 4.182 11 C -0.123 4.123 12 C -0.251 4.251 13 C 0.004 3.996 14 C -0.165 4.165 15 C -0.124 4.124 16 N -0.125 5.125 17 N -0.164 5.164 18 C -0.002 4.002 19 C -0.045 4.045 20 O -0.289 6.289 21 C -0.049 4.049 22 C -0.102 4.102 23 C -0.230 4.230 24 H 0.091 0.909 25 H 0.135 0.865 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.202 0.798 29 H 0.147 0.853 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.188 0.812 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.153 -14.317 0.232 14.365 hybrid contribution -0.115 1.606 -0.350 1.648 sum 1.038 -12.711 -0.118 12.754 Atomic orbital electron populations 1.69828 1.07560 1.29117 1.35571 1.25881 0.94686 1.01230 0.92259 0.86339 0.80527 0.80727 0.79277 1.19328 1.20400 1.18628 1.19569 0.98180 0.91224 1.40504 0.90421 1.17524 0.91151 0.91839 0.88621 1.21371 0.99271 0.96831 1.00760 1.20585 0.98651 0.93193 0.99886 1.20253 1.00924 0.96014 1.07935 1.17641 0.95510 0.89003 0.97483 1.19312 0.98927 0.93357 1.04865 1.24058 0.97764 0.93090 0.97481 1.77145 1.09386 1.07366 1.18587 1.48375 1.23189 1.05210 1.39584 1.24815 1.00578 0.77985 0.96818 1.24551 0.93223 0.93614 0.93106 1.89801 1.79144 1.43111 1.16864 1.24583 0.93983 0.93944 0.92421 1.22359 0.98794 0.88553 1.00533 1.20930 1.03606 0.91844 1.06601 0.90947 0.86489 0.89405 0.89789 0.79800 0.85255 0.88737 0.87457 0.87847 0.89121 0.81197 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.40 10.96 55.55 0.61 -19.79 16 2 C 0.08 1.91 5.14 -17.35 -0.09 1.82 16 3 Si 0.91 18.52 29.60 -169.99 -5.03 13.49 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 7 C -0.47 -12.18 9.05 -37.74 -0.34 -12.52 16 8 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 9 C 0.11 2.91 5.57 -106.86 -0.60 2.31 16 10 C -0.16 -4.17 8.69 -38.82 -0.34 -4.51 16 11 C -0.10 -2.40 10.01 -39.71 -0.40 -2.80 16 12 C -0.23 -5.00 9.57 -38.98 -0.37 -5.37 16 13 C 0.00 0.11 5.87 -104.96 -0.62 -0.51 16 14 C -0.15 -2.87 6.04 -105.34 -0.64 -3.51 16 15 C 0.06 1.10 11.41 -17.06 -0.19 0.90 16 16 N -0.31 -5.08 12.54 30.80 0.39 -4.69 16 17 N -0.38 -5.42 3.81 -61.04 -0.23 -5.65 16 18 C 0.10 1.06 5.26 -66.85 -0.35 0.71 16 19 C 0.03 0.29 8.61 37.64 0.32 0.62 16 20 O -0.37 -3.96 12.46 -35.23 -0.44 -4.40 16 21 C 0.03 0.28 9.02 37.64 0.34 0.62 16 22 C 0.04 0.63 10.08 -16.89 -0.17 0.46 16 23 C -0.21 -5.03 9.32 -38.55 -0.36 -5.38 16 24 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 25 H 0.12 3.10 6.15 -52.49 -0.32 2.77 16 26 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 27 H 0.08 1.56 6.99 -52.49 -0.37 1.19 16 28 H 0.19 2.91 7.34 -52.48 -0.39 2.52 16 29 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.09 0.81 6.28 -51.93 -0.33 0.48 16 31 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.17 2.19 5.88 -52.48 -0.31 1.88 16 35 H 0.09 2.10 7.04 -52.48 -0.37 1.73 16 LS Contribution 300.83 15.07 4.53 4.53 Total: -1.00 -29.38 300.83 -7.71 -37.09 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -3.74 Total: 6.58 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -3.80 Total: -27.16 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 0.76 Total: -30.13 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.44 Total: -4.40 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.38 -7.71 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240785418.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.961 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds