Wall clock time and date at job start Mon Mar 30 2020 01:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35604 * 117.00215 * 2 1 4 4 C 1.38517 * 120.08226 * 0.02562 * 3 2 1 5 5 C 1.38026 * 120.30794 * 180.02562 * 4 3 2 6 6 C 1.39934 * 120.47244 * 359.97438 * 5 4 3 7 7 C 1.48372 * 119.92015 * 180.02562 * 6 5 4 8 8 C 1.39395 * 120.09526 * 174.35022 * 7 6 5 9 9 C 1.38023 * 119.98778 * 179.76725 * 8 7 6 10 10 C 1.38255 * 120.18108 * 0.50895 * 9 8 7 11 11 C 1.38800 * 120.18826 * 359.74218 * 10 9 8 12 12 O 1.35910 * 119.99052 * 179.97438 * 11 10 9 13 13 C 1.38539 * 120.01168 * 0.02562 * 11 10 9 14 14 C 1.38616 * 120.15512 * 0.02635 * 6 5 4 15 15 C 1.40518 * 119.69163 * 0.25359 * 14 6 5 16 16 C 1.41183 * 120.22836 * 179.72419 * 15 14 6 17 17 H 1.08003 * 120.00365 * 151.28592 * 16 15 14 18 18 C 1.39916 * 120.00141 * 331.28253 * 16 15 14 19 19 N 1.30872 * 120.00447 * 161.26724 * 18 16 15 20 20 Si 1.86804 * 119.99633 * 341.26475 * 18 16 15 21 21 H 1.48493 * 109.47134 * 90.58397 * 20 18 16 22 22 H 1.48508 * 109.46699 * 210.58224 * 20 18 16 23 23 H 1.48499 * 109.47160 * 330.58101 * 20 18 16 24 24 H 1.08992 * 109.46960 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47135 * 300.00073 * 1 2 3 26 26 H 1.09001 * 109.46609 * 59.99861 * 1 2 3 27 27 H 1.07999 * 119.84718 * 0.03668 * 4 3 2 28 28 H 1.08001 * 119.76176 * 180.02562 * 5 4 3 29 29 H 1.07997 * 120.00330 * 359.97438 * 8 7 6 30 30 H 1.08000 * 119.91229 * 180.22908 * 9 8 7 31 31 H 1.07997 * 119.90399 * 179.71940 * 10 9 8 32 32 H 0.96707 * 113.99182 * 270.01978 * 12 11 10 33 33 H 1.08000 * 120.08389 * 179.97438 * 13 11 10 34 34 H 1.08008 * 120.14609 * 179.97438 * 14 6 5 35 35 H 0.96994 * 120.00285 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2920 2.3710 0.0005 5 6 1.9138 3.6033 0.0000 6 6 3.3102 3.6935 -0.0005 7 6 3.9659 5.0245 -0.0005 8 6 5.3514 5.1212 0.1177 9 6 5.9595 6.3602 0.1126 10 6 5.1970 7.5082 0.0011 11 6 3.8164 7.4208 -0.1118 12 8 3.0707 8.5518 -0.2207 13 6 3.1983 6.1809 -0.1124 14 6 4.0824 2.5423 -0.0011 15 6 3.4563 1.2843 -0.0065 16 6 4.2318 0.1045 -0.0130 17 1 3.8434 -0.7995 0.4324 18 6 5.5034 0.1063 -0.5965 19 7 6.3622 -0.8348 -0.2972 20 14 5.9755 1.4522 -1.8030 21 1 6.5978 2.5813 -1.0663 22 1 6.9433 0.9131 -2.7920 23 1 4.7607 1.9317 -2.5098 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 0.2136 2.3132 0.0016 28 1 1.3183 4.5043 0.0008 29 1 5.9493 4.2265 0.2098 30 1 7.0334 6.4336 0.2005 31 1 5.6770 8.4756 0.0021 32 1 2.7811 8.9150 0.6275 33 1 2.1240 6.1116 -0.1997 34 1 5.1602 2.6121 -0.0019 35 1 7.2436 -0.8337 -0.7020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240923916.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:50 Heat of formation + Delta-G solvation = -56.450414 kcal Electronic energy + Delta-G solvation = -19768.780701 eV Core-core repulsion = 16696.074832 eV Total energy + Delta-G solvation = -3072.705869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02021 -40.28659 -38.40979 -37.21337 -35.58126 -33.12058 -32.27665 -30.98259 -29.31181 -28.09067 -26.90051 -24.08213 -23.97586 -22.48334 -21.51426 -19.51578 -18.87576 -18.83649 -17.43174 -17.15474 -16.76036 -16.33521 -16.25234 -15.98823 -15.31782 -15.30032 -14.81490 -14.65591 -14.19978 -14.02915 -13.63740 -13.26957 -13.14399 -12.88456 -12.75443 -12.59675 -12.40815 -12.31358 -11.85237 -11.66180 -11.46051 -11.33979 -10.96901 -10.10808 -9.67470 -9.62981 -8.89730 -8.55657 -6.39964 -0.11886 0.33766 0.70634 1.05470 1.21717 1.38618 1.44024 2.08359 2.48075 2.78799 2.85308 3.27002 3.48790 3.83245 3.92623 4.12530 4.24682 4.32360 4.33203 4.47975 4.49980 4.53625 4.64908 4.74301 4.86850 4.96292 5.02688 5.14225 5.23262 5.40415 5.43101 5.50164 5.65417 5.66522 5.91071 6.00291 6.14652 6.26735 6.44458 6.77721 6.88759 7.04115 8.19697 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.007071 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.357598 B = 3958.885567 C = 5420.917412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.339 6.339 3 C 0.027 3.973 4 C -0.171 4.171 5 C -0.173 4.173 6 C -0.060 4.060 7 C -0.026 4.026 8 C -0.152 4.152 9 C -0.097 4.097 10 C -0.152 4.152 11 C 0.108 3.892 12 O -0.504 6.504 13 C -0.150 4.150 14 C -0.214 4.214 15 C 0.047 3.953 16 C -0.467 4.467 17 H 0.054 0.946 18 C 0.049 3.951 19 N -0.849 5.849 20 Si 0.954 3.046 21 H -0.246 1.246 22 H -0.276 1.276 23 H -0.264 1.264 24 H 0.109 0.891 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.143 0.857 28 H 0.138 0.862 29 H 0.111 0.889 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.411 0.589 33 H 0.140 0.860 34 H 0.110 0.890 35 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.353 15.072 0.611 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.254 6.254 3 C -0.018 4.018 4 C -0.190 4.190 5 C -0.192 4.192 6 C -0.060 4.060 7 C -0.027 4.027 8 C -0.170 4.170 9 C -0.115 4.115 10 C -0.170 4.170 11 C 0.064 3.936 12 O -0.318 6.318 13 C -0.168 4.168 14 C -0.233 4.233 15 C 0.045 3.955 16 C -0.497 4.497 17 H 0.073 0.927 18 C -0.164 4.164 19 N -0.476 5.476 20 Si 0.778 3.222 21 H -0.171 1.171 22 H -0.202 1.202 23 H -0.188 1.188 24 H 0.128 0.872 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.161 0.839 28 H 0.155 0.845 29 H 0.129 0.871 30 H 0.169 0.831 31 H 0.172 0.828 32 H 0.270 0.730 33 H 0.157 0.843 34 H 0.128 0.872 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.957 14.621 0.023 15.438 hybrid contribution 0.092 -0.302 0.165 0.356 sum -4.866 14.318 0.188 15.124 Atomic orbital electron populations 1.23190 0.77965 1.04530 1.01584 1.85976 1.22114 1.27796 1.89515 1.19489 0.91880 0.84448 1.05948 1.21043 0.99757 0.91525 1.06690 1.20736 0.92665 0.97054 1.08705 1.18612 0.93794 0.91135 1.02476 1.18889 0.93367 0.92161 0.98249 1.21510 0.94239 0.98873 1.02397 1.21214 1.01190 0.90886 0.98185 1.21668 0.93018 0.99960 1.02362 1.18384 0.90133 0.85550 0.99555 1.84767 1.71143 1.39285 1.36577 1.21585 1.00995 0.91100 1.03097 1.21034 0.98506 0.91291 1.12518 1.17299 0.89959 0.93340 0.94950 1.19168 0.99158 0.96989 1.34407 0.92743 1.26700 0.94592 0.98102 0.97044 1.69733 1.06520 1.33870 1.37461 0.85725 0.78968 0.78706 0.78802 1.17114 1.20210 1.18800 0.87235 0.92234 0.92287 0.83940 0.84475 0.87098 0.83081 0.82791 0.73029 0.84272 0.87245 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.81 113.37 1.11 1.78 16 2 O -0.34 -15.45 9.81 -89.14 -0.87 -16.33 16 3 C 0.03 1.31 6.72 23.11 0.16 1.46 16 4 C -0.17 -6.76 9.01 22.29 0.20 -6.56 16 5 C -0.17 -6.61 9.42 22.63 0.21 -6.40 16 6 C -0.06 -2.55 5.86 -20.08 -0.12 -2.67 16 7 C -0.03 -0.97 5.87 -20.06 -0.12 -1.08 16 8 C -0.15 -5.25 9.41 22.50 0.21 -5.04 16 9 C -0.10 -2.57 10.03 22.22 0.22 -2.35 16 10 C -0.15 -3.57 9.98 22.41 0.22 -3.35 16 11 C 0.11 2.76 6.70 22.48 0.15 2.91 16 12 O -0.50 -10.33 13.50 -92.53 -1.25 -11.58 16 13 C -0.15 -4.50 9.36 22.59 0.21 -4.29 16 14 C -0.21 -10.47 6.66 22.92 0.15 -10.31 16 15 C 0.05 2.52 5.14 -21.23 -0.11 2.41 16 16 C -0.47 -27.57 9.20 23.40 0.22 -27.35 16 17 H 0.05 3.52 7.87 -2.91 -0.02 3.50 16 18 C 0.05 2.76 5.40 85.24 0.46 3.22 16 19 N -0.85 -48.04 13.93 21.82 0.30 -47.73 16 20 Si 0.95 44.43 24.56 68.60 1.68 46.12 16 21 H -0.25 -10.52 5.78 99.48 0.58 -9.94 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.26 -12.85 7.05 99.48 0.70 -12.15 16 24 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 25 H 0.06 1.59 7.65 -2.39 -0.02 1.57 16 26 H 0.06 1.59 7.66 -2.39 -0.02 1.57 16 27 H 0.14 4.46 6.27 -2.91 -0.02 4.44 16 28 H 0.14 4.22 6.21 -2.91 -0.02 4.21 16 29 H 0.11 4.15 5.55 -2.91 -0.02 4.14 16 30 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 31 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.41 4.08 9.06 -74.05 -0.67 3.41 16 33 H 0.14 3.79 6.22 -2.91 -0.02 3.77 16 34 H 0.11 5.34 2.73 -2.91 -0.01 5.33 16 35 H 0.29 14.87 8.30 -92.71 -0.77 14.10 16 Total: -1.00 -69.45 292.06 3.39 -66.06 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.34 Total: 21.07 kcal Atomic # 6 Polarization: -60.80 SS G_CDS: 3.18 Total: -57.62 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.30 Total: -47.73 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -2.12 Total: -27.91 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.68 Total: 46.12 kcal Total: -69.45 3.39 -66.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240923916.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.614 kcal (2) G-P(sol) polarization free energy of solvation -69.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds