Wall clock time and date at job start Mon Mar 30 2020 01:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35680 * 116.99406 * 2 1 4 4 C 1.37978 * 120.19768 * 0.23550 * 3 2 1 5 5 C 1.39620 * 119.92997 * 180.30206 * 4 3 2 6 6 C 1.48034 * 119.83803 * 179.71473 * 5 4 3 7 7 C 1.39621 * 120.11286 * 359.74526 * 6 5 4 8 8 C 1.37959 * 119.96578 * 179.74067 * 7 6 5 9 9 C 1.38315 * 120.19791 * 0.53606 * 8 7 6 10 10 C 1.38850 * 120.23379 * 359.71522 * 9 8 7 11 11 O 1.35906 * 119.98435 * 179.97438 * 10 9 8 12 12 C 1.38466 * 120.02856 * 0.02875 * 10 9 8 13 13 C 1.40068 * 120.32628 * 359.73222 * 5 4 3 14 14 C 1.36119 * 120.39534 * 359.97438 * 13 5 4 15 15 C 1.40908 * 120.05927 * 0.02562 * 14 13 5 16 16 C 1.40838 * 120.16453 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00055 * 208.90075 * 16 15 14 18 18 C 1.39996 * 119.99785 * 28.89343 * 16 15 14 19 19 N 1.30828 * 120.00331 * 197.78410 * 18 16 15 20 20 Si 1.86805 * 119.99952 * 17.78340 * 18 16 15 21 21 H 1.48494 * 109.47555 * 269.99871 * 20 18 16 22 22 H 1.48500 * 109.46943 * 30.00545 * 20 18 16 23 23 H 1.48509 * 109.47008 * 149.99881 * 20 18 16 24 24 H 1.08997 * 109.46966 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47290 * 299.99977 * 1 2 3 26 26 H 1.09002 * 109.47103 * 60.00504 * 1 2 3 27 27 H 1.07996 * 120.03597 * 0.02562 * 4 3 2 28 28 H 1.08001 * 120.01801 * 359.97438 * 7 6 5 29 29 H 1.08000 * 119.90150 * 180.25303 * 8 7 6 30 30 H 1.08005 * 119.88287 * 179.70091 * 9 8 7 31 31 H 0.96692 * 114.00346 * 270.02544 * 11 10 9 32 32 H 1.08005 * 120.10321 * 179.97438 * 12 10 9 33 33 H 1.08006 * 119.80621 * 180.02562 * 13 5 4 34 34 H 1.07999 * 119.96675 * 180.02562 * 14 13 5 35 35 H 0.97002 * 119.99842 * 355.44369 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 1.2973 2.3687 0.0049 5 6 1.9368 3.6098 -0.0015 6 6 1.1326 4.8527 -0.0026 7 6 -0.2619 4.7848 -0.0027 8 6 -1.0083 5.9450 0.0017 9 6 -0.3794 7.1769 -0.0051 10 6 1.0069 7.2541 -0.0103 11 8 1.6196 8.4671 -0.0175 12 6 1.7654 6.0956 -0.0094 13 6 3.3354 3.6847 -0.0072 14 6 4.0859 2.5491 -0.0061 15 6 3.4577 1.2879 0.0003 16 6 4.2321 0.1115 0.0009 17 1 3.8433 -0.7912 -0.4467 18 6 5.5059 0.1123 0.5817 19 7 6.3578 -0.8372 0.2915 20 14 5.9891 1.4692 1.7712 21 1 6.6038 2.5919 1.0183 22 1 4.7811 1.9548 2.4854 23 1 6.9667 0.9396 2.7557 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2186 2.3164 0.0092 28 1 -0.7561 3.8244 -0.0023 29 1 -2.0870 5.8912 0.0058 30 1 -0.9688 8.0819 -0.0065 31 1 1.7934 8.8148 -0.9029 32 1 2.8439 6.1543 -0.0139 33 1 3.8214 4.6492 -0.0118 34 1 5.1639 2.6149 -0.0102 35 1 6.0855 -1.5771 -0.2736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240924688.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:52 Heat of formation + Delta-G solvation = -61.742691 kcal Electronic energy + Delta-G solvation = -19639.219435 eV Core-core repulsion = 16566.284076 eV Total energy + Delta-G solvation = -3072.935359 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.01937 -40.21924 -38.31081 -37.39600 -35.72895 -33.29351 -31.54094 -30.68367 -30.12062 -28.15227 -26.52678 -23.95975 -23.63476 -22.37363 -21.72320 -20.19615 -19.39049 -18.12974 -17.49033 -17.03572 -16.42143 -16.35172 -16.05923 -16.00385 -15.87547 -15.06427 -14.91622 -14.71218 -14.15438 -13.95372 -13.74167 -13.14014 -13.10686 -12.86136 -12.76483 -12.41146 -12.19530 -12.00356 -11.83337 -11.67153 -11.39580 -11.27505 -10.96095 -10.24051 -9.63842 -9.45079 -9.21051 -8.83287 -6.45202 -0.07794 0.41937 0.82090 1.04075 1.35633 1.54549 1.74866 2.14389 2.49613 2.75043 2.92483 3.33521 3.47001 3.90911 3.96279 4.08224 4.28738 4.38305 4.39973 4.42247 4.45252 4.57239 4.68487 4.74050 4.86659 4.98306 5.08656 5.17611 5.35678 5.44273 5.47963 5.54091 5.57445 5.70132 5.97316 5.98488 6.05360 6.22980 6.39479 6.63047 6.90667 7.01820 7.93466 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.020476 B = 0.005804 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.096637 B = 4823.005384 C = 6006.983400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.342 6.342 3 C 0.009 3.991 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.001 4.001 7 C -0.151 4.151 8 C -0.091 4.091 9 C -0.168 4.168 10 C 0.107 3.893 11 O -0.510 6.510 12 C -0.174 4.174 13 C -0.084 4.084 14 C -0.237 4.237 15 C 0.061 3.939 16 C -0.520 4.520 17 H 0.047 0.953 18 C 0.010 3.990 19 N -0.836 5.836 20 Si 1.103 2.897 21 H -0.251 1.251 22 H -0.266 1.266 23 H -0.278 1.278 24 H 0.110 0.890 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.139 0.861 28 H 0.130 0.870 29 H 0.155 0.845 30 H 0.147 0.853 31 H 0.409 0.591 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.461 13.128 -0.892 18.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.257 6.257 3 C -0.036 4.036 4 C -0.166 4.166 5 C -0.156 4.156 6 C -0.002 4.002 7 C -0.169 4.169 8 C -0.108 4.108 9 C -0.187 4.187 10 C 0.063 3.937 11 O -0.323 6.323 12 C -0.192 4.192 13 C -0.102 4.102 14 C -0.256 4.256 15 C 0.058 3.942 16 C -0.549 4.549 17 H 0.065 0.935 18 C -0.204 4.204 19 N -0.459 5.459 20 Si 0.923 3.077 21 H -0.177 1.177 22 H -0.190 1.190 23 H -0.205 1.205 24 H 0.128 0.872 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.156 0.844 28 H 0.147 0.853 29 H 0.173 0.827 30 H 0.165 0.835 31 H 0.267 0.733 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.132 0.868 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.101 13.324 0.555 17.351 hybrid contribution -1.043 -1.332 -1.757 2.439 sum -12.143 11.992 -1.202 17.109 Atomic orbital electron populations 1.23166 0.78149 1.04499 1.01427 1.85968 1.21954 1.27705 1.90076 1.19242 0.92016 0.84237 1.08069 1.21067 0.99332 0.90966 1.05216 1.18237 0.92418 0.91562 1.13334 1.18757 0.93450 0.91415 0.96540 1.21421 0.92548 0.99700 1.03237 1.21226 1.01065 0.90968 0.97584 1.21623 0.93377 0.99334 1.04326 1.18437 0.90938 0.84369 0.99962 1.84753 1.80353 1.31850 1.35322 1.21585 1.00685 0.91634 1.05298 1.20715 0.93250 0.97598 0.98630 1.20721 0.99157 0.91861 1.13853 1.17527 0.89836 0.93845 0.93032 1.20427 1.02083 0.97475 1.34876 0.93462 1.28363 0.91400 1.02936 0.97703 1.70596 1.35329 1.10084 1.29884 0.83241 0.77166 0.72601 0.74649 1.17664 1.19038 1.20477 0.87165 0.92416 0.92473 0.84382 0.85251 0.82725 0.83514 0.73276 0.85653 0.85433 0.86785 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.81 113.37 1.11 1.79 16 2 O -0.34 -15.51 9.82 -89.98 -0.88 -16.39 16 3 C 0.01 0.42 6.71 23.01 0.15 0.58 16 4 C -0.15 -5.93 8.40 22.54 0.19 -5.74 16 5 C -0.15 -6.11 5.89 -19.90 -0.12 -6.22 16 6 C 0.00 -0.05 5.88 -20.05 -0.12 -0.16 16 7 C -0.15 -4.13 9.42 22.54 0.21 -3.92 16 8 C -0.09 -1.97 10.03 22.22 0.22 -1.75 16 9 C -0.17 -3.69 9.98 22.43 0.22 -3.47 16 10 C 0.11 2.75 6.70 22.47 0.15 2.90 16 11 O -0.51 -11.13 13.50 -92.49 -1.25 -12.38 16 12 C -0.17 -5.25 9.36 22.62 0.21 -5.04 16 13 C -0.08 -3.49 9.34 22.22 0.21 -3.29 16 14 C -0.24 -11.25 7.20 22.43 0.16 -11.09 16 15 C 0.06 3.19 5.15 -21.18 -0.11 3.08 16 16 C -0.52 -29.73 9.05 23.33 0.21 -29.51 16 17 H 0.05 2.93 7.87 -2.91 -0.02 2.90 16 18 C 0.01 0.54 5.41 85.27 0.46 1.01 16 19 N -0.84 -46.74 13.66 21.84 0.30 -46.44 16 20 Si 1.10 49.40 24.90 68.60 1.71 51.11 16 21 H -0.25 -10.19 6.43 99.48 0.64 -9.55 16 22 H -0.27 -11.93 7.03 99.48 0.70 -11.23 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 25 H 0.06 1.57 7.65 -2.39 -0.02 1.56 16 26 H 0.06 1.55 7.67 -2.39 -0.02 1.53 16 27 H 0.14 4.56 4.40 -2.91 -0.01 4.54 16 28 H 0.13 3.21 6.18 -2.91 -0.02 3.19 16 29 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 30 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.41 4.75 9.06 -74.06 -0.67 4.08 16 32 H 0.13 3.74 6.17 -2.91 -0.02 3.72 16 33 H 0.13 4.53 6.16 -2.91 -0.02 4.51 16 34 H 0.11 5.30 4.39 -2.91 -0.01 5.29 16 35 H 0.28 15.51 8.73 -92.71 -0.81 14.70 16 Total: -1.00 -66.90 293.33 3.41 -63.49 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.36 Total: 21.47 kcal Atomic # 6 Polarization: -64.02 SS G_CDS: 3.18 Total: -60.85 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.30 Total: -46.44 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -2.13 Total: -28.78 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 1.71 Total: 51.11 kcal Total: -66.90 3.41 -63.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240924688.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.746 kcal (2) G-P(sol) polarization free energy of solvation -66.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds