Wall clock time and date at job start Mon Mar 30 2020 01:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00061 * 2 1 4 4 H 1.48498 * 109.47050 * 269.99845 * 3 2 1 5 5 H 1.48499 * 109.46916 * 30.00133 * 3 2 1 6 6 H 1.48498 * 109.47161 * 149.99974 * 3 2 1 7 7 C 1.37875 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99484 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00518 * 179.97438 * 7 2 1 10 10 O 1.42894 * 109.47397 * 180.02562 * 9 7 2 11 11 C 1.35873 * 117.00202 * 179.97438 * 10 9 7 12 12 C 1.38831 * 119.93386 * 180.02562 * 11 10 9 13 13 C 1.37909 * 120.06355 * 180.02562 * 12 11 10 14 14 C 1.39380 * 119.93254 * 0.02562 * 13 12 11 15 15 C 1.48374 * 120.06344 * 179.97438 * 14 13 12 16 16 C 1.39394 * 120.09135 * 359.97438 * 15 14 13 17 17 C 1.38025 * 119.98111 * 179.72404 * 16 15 14 18 18 C 1.38250 * 120.18465 * 0.28384 * 17 16 15 19 19 C 1.38798 * 120.19115 * 0.02562 * 18 17 16 20 20 O 1.35895 * 119.99498 * 179.97438 * 19 18 17 21 21 C 1.38538 * 120.00516 * 359.97438 * 19 18 17 22 22 C 1.39375 * 119.86990 * 0.25103 * 14 13 12 23 23 C 1.37905 * 119.93671 * 359.46894 * 22 14 13 24 24 H 0.97008 * 119.99586 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.46853 * 60.00410 * 9 7 2 26 26 H 1.08994 * 109.47175 * 300.00887 * 9 7 2 27 27 H 1.07997 * 119.96959 * 359.97438 * 12 11 10 28 28 H 1.08001 * 120.03316 * 180.02562 * 13 12 11 29 29 H 1.08002 * 120.01257 * 0.02562 * 16 15 14 30 30 H 1.08007 * 119.90888 * 180.30111 * 17 16 15 31 31 H 1.08004 * 119.90492 * 179.97438 * 18 17 16 32 32 H 0.96702 * 113.99866 * 90.00412 * 20 19 18 33 33 H 1.08008 * 120.08323 * 180.02562 * 21 19 18 34 34 H 1.08004 * 120.02844 * 179.75458 * 22 14 13 35 35 H 1.08000 * 119.96881 * 180.27254 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9878 -2.5413 0.0001 11 6 5.3348 -2.7194 -0.0010 12 6 5.8639 -4.0029 -0.0014 13 6 7.2307 -4.1867 -0.0019 14 6 8.0810 -3.0823 -0.0014 15 6 9.5520 -3.2768 -0.0014 16 6 10.0868 -4.5640 -0.0013 17 6 11.4555 -4.7423 -0.0071 18 6 12.2991 -3.6470 -0.0069 19 6 11.7746 -2.3620 -0.0005 20 8 12.6075 -1.2882 0.0001 21 6 10.4020 -2.1739 0.0052 22 6 7.5468 -1.7950 0.0049 23 6 6.1793 -1.6174 -0.0005 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6797 0.8896 26 1 3.8745 -0.6808 -0.8904 27 1 5.2046 -4.8582 -0.0006 28 1 7.6418 -5.1855 -0.0027 29 1 9.4304 -5.4217 -0.0017 30 1 11.8686 -5.7402 -0.0119 31 1 13.3694 -3.7917 -0.0110 32 1 12.8452 -0.9743 -0.8831 33 1 9.9925 -1.1745 0.0098 34 1 8.2033 -0.9375 0.0093 35 1 5.7648 -0.6201 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240926660.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:05 Heat of formation + Delta-G solvation = -34.347394 kcal Electronic energy + Delta-G solvation = -18797.956026 eV Core-core repulsion = 15726.208616 eV Total energy + Delta-G solvation = -3071.747410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.20342 -39.32387 -37.47719 -36.29299 -32.95176 -32.07224 -31.10426 -29.97602 -28.85321 -27.65320 -23.76377 -23.48059 -22.40053 -21.30168 -20.66072 -18.52388 -17.86381 -16.91654 -16.41744 -15.93944 -15.82661 -15.09169 -14.94527 -14.75684 -14.24377 -14.05913 -14.00155 -13.19600 -13.02475 -12.88094 -12.40024 -12.32914 -12.12873 -11.70404 -11.69440 -11.19754 -11.14337 -10.71399 -10.55164 -10.42040 -10.03214 -9.40898 -9.22270 -8.89923 -8.85437 -8.75959 -7.43549 -6.28502 -4.31019 0.70532 1.10014 1.56035 1.98601 3.13743 3.20259 3.21571 3.45274 3.95139 4.05913 4.15209 4.20098 4.59807 4.64539 4.87577 5.01932 5.03144 5.07421 5.15058 5.25936 5.48519 5.55744 5.71631 5.75528 5.85695 6.12851 6.18503 6.21848 6.25566 6.28605 6.44285 6.65094 6.65783 6.67367 6.77875 7.00435 7.32506 7.41528 7.91682 8.44360 8.80534 9.27025 10.83767 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.032545 B = 0.003543 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.143890 B = 7900.429377 C = 8742.884588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.873 3.127 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.087 0.913 9 C 0.166 3.834 10 O -0.299 6.299 11 C 0.161 3.839 12 C -0.165 4.165 13 C -0.064 4.064 14 C -0.119 4.119 15 C 0.000 4.000 16 C -0.131 4.131 17 C -0.098 4.098 18 C -0.159 4.159 19 C 0.108 3.892 20 O -0.501 6.501 21 C -0.148 4.148 22 C -0.061 4.061 23 C -0.216 4.216 24 H 0.270 0.730 25 H 0.020 0.980 26 H 0.016 0.984 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.389 0.611 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.540 -6.032 -1.657 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.568 4.568 8 H 0.105 0.895 9 C 0.093 3.907 10 O -0.211 6.211 11 C 0.112 3.888 12 C -0.184 4.184 13 C -0.082 4.082 14 C -0.120 4.120 15 C 0.000 4.000 16 C -0.148 4.148 17 C -0.116 4.116 18 C -0.177 4.177 19 C 0.064 3.936 20 O -0.311 6.311 21 C -0.166 4.166 22 C -0.079 4.079 23 C -0.235 4.235 24 H 0.080 0.920 25 H 0.038 0.962 26 H 0.033 0.967 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.245 0.755 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 23.133 -6.086 -1.043 23.943 hybrid contribution 0.459 1.320 -0.499 1.484 sum 23.593 -4.766 -1.541 24.119 Atomic orbital electron populations 1.69851 1.06039 1.27476 1.49022 1.24702 0.94846 0.98718 0.94211 0.86892 0.80435 0.83695 0.79073 1.19573 1.20349 1.18946 1.20765 0.87375 0.95835 1.52868 0.89514 1.21047 0.96661 0.77058 0.95938 1.86171 1.16238 1.33214 1.85485 1.19450 0.84545 0.93690 0.91110 1.20389 0.94840 0.95288 1.07843 1.20914 0.92108 0.97988 0.97146 1.18462 0.90940 0.93560 1.08993 1.18654 0.91942 0.92665 0.96775 1.21266 0.95176 0.96628 1.01772 1.20942 0.93138 0.98500 0.99057 1.21392 1.00354 0.91974 1.04024 1.18359 0.88519 0.86403 1.00316 1.84824 1.66293 1.46439 1.33549 1.21499 0.92361 0.99513 1.03274 1.20957 0.94352 0.96119 0.96485 1.21344 0.93837 0.99166 1.09138 0.91980 0.96192 0.96672 0.85004 0.85491 0.85388 0.85570 0.85705 0.75501 0.85173 0.85997 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.87 20.44 27.47 -169.99 -4.67 15.77 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 7 C -0.53 -15.22 9.99 -34.44 -0.34 -15.56 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 9 C 0.17 4.06 3.56 36.00 0.13 4.19 16 10 O -0.30 -6.90 10.12 -19.34 -0.20 -7.10 16 11 C 0.16 3.06 6.69 -39.14 -0.26 2.80 16 12 C -0.16 -2.63 9.97 -39.48 -0.39 -3.03 16 13 C -0.06 -0.86 9.42 -39.28 -0.37 -1.23 16 14 C -0.12 -1.66 5.88 -104.88 -0.62 -2.27 16 15 C 0.00 0.00 5.87 -104.92 -0.62 -0.62 16 16 C -0.13 -1.36 9.42 -39.23 -0.37 -1.73 16 17 C -0.10 -0.89 10.03 -39.66 -0.40 -1.29 16 18 C -0.16 -1.51 9.98 -39.37 -0.39 -1.90 16 19 C 0.11 1.15 6.70 -39.26 -0.26 0.89 16 20 O -0.50 -4.73 13.50 -19.41 -0.26 -4.99 16 21 C -0.15 -1.72 9.36 -39.10 -0.37 -2.09 16 22 C -0.06 -0.90 9.42 -39.28 -0.37 -1.27 16 23 C -0.22 -3.76 9.02 -39.48 -0.36 -4.11 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.48 6.71 -51.92 -0.35 0.13 16 26 H 0.02 0.36 7.08 -51.93 -0.37 -0.01 16 27 H 0.13 1.93 8.06 -52.49 -0.42 1.50 16 28 H 0.13 1.31 6.20 -52.49 -0.33 0.99 16 29 H 0.13 1.10 6.20 -52.49 -0.33 0.78 16 30 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 31 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.39 1.76 9.06 45.56 0.41 2.18 16 33 H 0.13 1.42 6.20 -52.48 -0.33 1.10 16 34 H 0.12 1.51 6.20 -52.48 -0.33 1.18 16 35 H 0.13 2.30 6.28 -52.49 -0.33 1.97 16 LS Contribution 301.05 15.07 4.54 4.54 Total: -1.00 -32.02 301.05 -7.70 -39.72 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -2.79 Total: 2.87 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -5.09 Total: -25.09 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.77 Total: -25.71 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.46 Total: -12.09 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.02 -7.70 -39.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240926660.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.372 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds