Wall clock time and date at job start Mon Mar 30 2020 01:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35680 * 116.99829 * 2 1 4 4 C 1.37937 * 120.19499 * 0.27815 * 3 2 1 5 5 C 1.39684 * 119.93617 * 180.31991 * 4 3 2 6 6 C 1.47900 * 119.84943 * 179.69792 * 5 4 3 7 7 C 1.39580 * 120.17489 * 309.97736 * 6 5 4 8 8 C 1.37882 * 119.91366 * 179.97438 * 7 6 5 9 9 C 1.38494 * 120.26808 * 0.02562 * 8 7 6 10 10 C 1.38185 * 120.36375 * 359.97438 * 9 8 7 11 11 C 1.38568 * 120.08161 * 359.73928 * 10 9 8 12 12 O 1.35789 * 120.14053 * 180.26039 * 11 10 9 13 13 C 1.40139 * 120.30460 * 359.67295 * 5 4 3 14 14 C 1.36083 * 120.39313 * 0.02562 * 13 5 4 15 15 C 1.40930 * 120.05953 * 0.04621 * 14 13 5 16 16 C 1.40813 * 120.15417 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00064 * 154.55357 * 16 15 14 18 18 C 1.39978 * 119.99771 * 334.54624 * 16 15 14 19 19 N 1.30850 * 120.00186 * 334.52245 * 18 16 15 20 20 Si 1.86804 * 119.99638 * 154.51926 * 18 16 15 21 21 H 1.48494 * 109.47001 * 180.02562 * 20 18 16 22 22 H 1.48499 * 109.47352 * 300.00373 * 20 18 16 23 23 H 1.48500 * 109.47162 * 60.00071 * 20 18 16 24 24 H 1.08999 * 109.47289 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47164 * 300.00545 * 1 2 3 26 26 H 1.08999 * 109.47169 * 60.00371 * 1 2 3 27 27 H 1.08004 * 120.02950 * 359.97438 * 4 3 2 28 28 H 1.08004 * 120.04602 * 359.97438 * 7 6 5 29 29 H 1.07998 * 119.87251 * 180.02562 * 8 7 6 30 30 H 1.08006 * 119.82234 * 179.97438 * 9 8 7 31 31 H 1.07999 * 119.96180 * 180.02562 * 10 9 8 32 32 H 0.96704 * 113.99853 * 270.27874 * 12 11 10 33 33 H 1.08006 * 119.80280 * 180.02562 * 13 5 4 34 34 H 1.07996 * 119.97181 * 180.02562 * 14 13 5 35 35 H 0.96998 * 120.00278 * 354.15498 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2976 2.3683 0.0058 5 6 1.9373 3.6100 -0.0010 6 6 1.1340 4.8519 -0.0015 7 6 0.0980 5.0170 -0.9223 8 6 -0.6477 6.1767 -0.9176 9 6 -0.3729 7.1797 -0.0030 10 6 0.6501 7.0282 0.9135 11 6 1.4051 5.8663 0.9259 12 8 2.4072 5.7139 1.8294 13 6 3.3367 3.6846 -0.0068 14 6 4.0866 2.5490 -0.0064 15 6 3.4579 1.2878 -0.0011 16 6 4.2319 0.1115 -0.0012 17 1 3.8247 -0.8029 0.4044 18 6 5.5291 0.1274 -0.5270 19 7 5.8567 1.0120 -1.4338 20 14 6.7924 -1.1144 0.0659 21 1 8.0788 -0.8874 -0.6404 22 1 6.9960 -0.9539 1.5281 23 1 6.3069 -2.4887 -0.2183 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2188 2.3160 0.0099 28 1 -0.1192 4.2373 -1.6374 29 1 -1.4494 6.3036 -1.6301 30 1 -0.9614 8.0854 -0.0061 31 1 0.8585 7.8143 1.6241 32 1 3.2655 6.0373 1.5231 33 1 3.8229 4.6490 -0.0116 34 1 5.1646 2.6144 -0.0104 35 1 5.1805 1.6011 -1.8034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241013962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:56 Heat of formation + Delta-G solvation = -63.077133 kcal Electronic energy + Delta-G solvation = -19859.120290 eV Core-core repulsion = 16786.127065 eV Total energy + Delta-G solvation = -3072.993225 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03119 -40.15640 -38.02617 -37.48093 -35.91501 -32.84508 -31.05191 -30.70441 -30.06008 -28.05356 -26.77173 -23.85956 -23.44927 -22.39814 -21.92313 -20.00791 -19.28662 -18.20704 -17.23656 -16.72171 -16.49645 -16.41153 -16.20813 -15.95662 -15.59722 -15.05188 -14.75900 -14.58940 -14.21831 -13.78333 -13.56820 -13.13140 -12.98275 -12.81867 -12.68456 -12.44563 -12.35466 -11.95702 -11.86541 -11.71744 -11.44943 -11.15090 -10.86601 -10.02870 -9.65052 -9.35843 -9.20184 -8.85703 -6.32384 0.14570 0.39771 0.90788 0.99235 1.50729 1.63604 1.80859 2.32820 2.58702 2.77748 2.82501 3.39984 3.46360 3.92770 4.07198 4.16584 4.21841 4.34963 4.37941 4.40295 4.52113 4.61892 4.64510 4.80645 4.92644 5.05854 5.11988 5.22676 5.42110 5.46173 5.55811 5.58361 5.72987 5.77682 5.97589 6.00270 6.10959 6.28193 6.46121 6.84360 6.87158 7.07314 8.01256 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.023682 B = 0.005406 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.071989 B = 5177.763586 C = 5931.268902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.339 6.339 3 C -0.007 4.007 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.055 4.055 7 C -0.120 4.120 8 C -0.123 4.123 9 C -0.114 4.114 10 C -0.146 4.146 11 C 0.084 3.916 12 O -0.507 6.507 13 C -0.081 4.081 14 C -0.217 4.217 15 C 0.055 3.945 16 C -0.533 4.533 17 H 0.067 0.933 18 C 0.004 3.996 19 N -0.812 5.812 20 Si 1.117 2.883 21 H -0.267 1.267 22 H -0.264 1.264 23 H -0.260 1.260 24 H 0.115 0.885 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.152 0.848 30 H 0.158 0.842 31 H 0.145 0.855 32 H 0.396 0.604 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.053 8.507 1.072 12.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.254 6.254 3 C -0.051 4.051 4 C -0.170 4.170 5 C -0.157 4.157 6 C -0.056 4.056 7 C -0.138 4.138 8 C -0.141 4.141 9 C -0.132 4.132 10 C -0.164 4.164 11 C 0.039 3.961 12 O -0.318 6.318 13 C -0.099 4.099 14 C -0.237 4.237 15 C 0.052 3.948 16 C -0.561 4.561 17 H 0.085 0.915 18 C -0.212 4.212 19 N -0.435 5.435 20 Si 0.933 3.067 21 H -0.191 1.191 22 H -0.189 1.189 23 H -0.185 1.185 24 H 0.133 0.867 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.170 0.830 30 H 0.176 0.824 31 H 0.163 0.837 32 H 0.254 0.746 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.813 7.665 1.219 11.013 hybrid contribution -1.325 0.573 -0.182 1.455 sum -9.139 8.238 1.037 12.347 Atomic orbital electron populations 1.23086 0.78573 1.04360 1.00802 1.85916 1.21509 1.27665 1.90345 1.19181 0.92111 0.83953 1.09856 1.20899 0.98348 0.91458 1.06307 1.18007 0.92282 0.91231 1.14199 1.19358 0.96962 0.93827 0.95445 1.21342 0.95444 0.98933 0.98117 1.21396 0.99932 0.92893 0.99847 1.21401 0.97155 1.00079 0.94540 1.21584 0.97755 0.96405 1.00671 1.18873 0.93082 0.93793 0.90316 1.84755 1.20384 1.85882 1.40799 1.20398 0.92831 0.96849 0.99834 1.20543 0.98384 0.91872 1.12915 1.17520 0.89429 0.94373 0.93486 1.20523 1.01111 0.97184 1.37251 0.91466 1.28450 1.00511 1.00191 0.92023 1.70579 1.39184 1.15687 1.18025 0.83018 0.73114 0.73342 0.77198 1.19124 1.18887 1.18495 0.86707 0.93334 0.93078 0.86154 0.86238 0.83037 0.82398 0.83709 0.74620 0.87120 0.88337 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.81 113.37 1.11 2.02 16 2 O -0.34 -16.28 9.78 -89.98 -0.88 -17.16 16 3 C -0.01 -0.35 6.71 23.01 0.15 -0.19 16 4 C -0.15 -6.92 8.47 22.55 0.19 -6.72 16 5 C -0.16 -6.89 5.29 -19.91 -0.11 -7.00 16 6 C -0.06 -2.03 5.47 -19.94 -0.11 -2.14 16 7 C -0.12 -3.71 9.50 22.51 0.21 -3.49 16 8 C -0.12 -2.87 10.03 22.25 0.22 -2.65 16 9 C -0.11 -2.43 10.03 22.32 0.22 -2.21 16 10 C -0.15 -3.71 9.98 22.34 0.22 -3.48 16 11 C 0.08 2.76 6.61 22.80 0.15 2.91 16 12 O -0.51 -16.95 12.13 -91.18 -1.11 -18.06 16 13 C -0.08 -3.73 8.69 22.23 0.19 -3.53 16 14 C -0.22 -11.45 7.87 22.43 0.18 -11.27 16 15 C 0.05 3.07 5.31 -21.18 -0.11 2.96 16 16 C -0.53 -30.17 8.62 23.32 0.20 -29.97 16 17 H 0.07 3.85 7.71 -2.91 -0.02 3.83 16 18 C 0.00 0.23 4.93 85.26 0.42 0.65 16 19 N -0.81 -44.42 12.30 21.84 0.27 -44.15 16 20 Si 1.12 44.38 30.00 68.60 2.06 46.44 16 21 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 23 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 24 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 25 H 0.05 1.54 7.65 -2.39 -0.02 1.53 16 26 H 0.05 1.60 7.67 -2.39 -0.02 1.58 16 27 H 0.12 4.83 6.26 -2.91 -0.02 4.81 16 28 H 0.12 3.62 8.04 -2.91 -0.02 3.60 16 29 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 30 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 32 H 0.40 10.20 8.24 -74.05 -0.61 9.59 16 33 H 0.11 4.42 7.10 -2.91 -0.02 4.40 16 34 H 0.10 5.35 6.47 -2.91 -0.02 5.33 16 35 H 0.28 16.16 6.69 -92.71 -0.62 15.54 16 Total: -1.00 -68.10 301.03 4.16 -63.95 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: 0.66 Total: 33.12 kcal Atomic # 6 Polarization: -67.28 SS G_CDS: 3.16 Total: -64.13 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.27 Total: -44.15 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -1.99 Total: -35.22 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.06 Total: 46.44 kcal Total: -68.10 4.16 -63.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241013962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.870 kcal (2) G-P(sol) polarization free energy of solvation -68.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds