Wall clock time and date at job start Mon Mar 30 2020 01:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35605 * 117.00421 * 2 1 4 4 C 1.38519 * 120.08104 * 359.94874 * 3 2 1 5 5 C 1.38029 * 120.31158 * 180.02562 * 4 3 2 6 6 C 1.39958 * 120.46578 * 0.02562 * 5 4 3 7 7 C 1.48328 * 119.92184 * 179.97438 * 6 5 4 8 8 C 1.39307 * 120.14999 * 130.00095 * 7 6 5 9 9 C 1.38006 * 119.93127 * 179.97438 * 8 7 6 10 10 C 1.38383 * 120.23708 * 359.97438 * 9 8 7 11 11 C 1.38196 * 120.30712 * 0.03423 * 10 9 8 12 12 C 1.38575 * 120.06061 * 359.68958 * 11 10 9 13 13 O 1.35854 * 120.11799 * 180.28354 * 12 11 10 14 14 C 1.38634 * 120.15946 * 0.02562 * 6 5 4 15 15 C 1.40522 * 119.68247 * 359.97438 * 14 6 5 16 16 C 1.41181 * 120.22434 * 179.97438 * 15 14 6 17 17 H 1.08001 * 119.99765 * 154.48650 * 16 15 14 18 18 C 1.39899 * 120.00184 * 334.48569 * 16 15 14 19 19 N 1.30880 * 120.00110 * 343.13266 * 18 16 15 20 20 Si 1.86804 * 120.00263 * 163.12514 * 18 16 15 21 21 H 1.48494 * 109.46796 * 89.99934 * 20 18 16 22 22 H 1.48496 * 109.47192 * 210.00215 * 20 18 16 23 23 H 1.48503 * 109.46943 * 330.00201 * 20 18 16 24 24 H 1.09003 * 109.46916 * 59.99658 * 1 2 3 25 25 H 1.08998 * 109.47176 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46823 * 300.00456 * 1 2 3 27 27 H 1.07997 * 119.84390 * 0.05211 * 4 3 2 28 28 H 1.07999 * 119.76517 * 180.28301 * 5 4 3 29 29 H 1.08007 * 120.03199 * 359.97438 * 8 7 6 30 30 H 1.07996 * 119.87978 * 179.97438 * 9 8 7 31 31 H 1.07997 * 119.85056 * 180.02562 * 10 9 8 32 32 H 1.07994 * 119.97093 * 179.97438 * 11 10 9 33 33 H 0.96701 * 113.99830 * 270.27988 * 13 12 11 34 34 H 1.07995 * 120.15747 * 179.97438 * 14 6 5 35 35 H 0.96993 * 120.00172 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2920 2.3710 -0.0011 5 6 1.9138 3.6034 -0.0016 6 6 3.3105 3.6935 -0.0016 7 6 3.9660 5.0240 -0.0028 8 6 4.9698 5.3103 0.9198 9 6 5.5771 6.5495 0.9143 10 6 5.1929 7.5098 -0.0051 11 6 4.1981 7.2364 -0.9246 12 6 3.5839 5.9942 -0.9340 13 8 2.6099 5.7223 -1.8412 14 6 4.0827 2.5421 -0.0016 15 6 3.4565 1.2842 -0.0011 16 6 4.2318 0.1043 -0.0016 17 1 3.8232 -0.8105 0.4016 18 6 5.5293 0.1201 -0.5245 19 7 5.9106 1.1035 -1.2994 20 14 6.7177 -1.2622 -0.1165 21 1 6.5894 -2.3403 -1.1297 22 1 8.1073 -0.7387 -0.1240 23 1 6.4009 -1.8065 1.2283 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.2136 2.3132 -0.0011 28 1 1.3183 4.5043 0.0022 29 1 5.2724 4.5631 1.6386 30 1 6.3549 6.7707 1.6302 31 1 5.6727 8.4773 -0.0041 32 1 3.9023 7.9899 -1.6394 33 1 1.7184 5.9448 -1.5396 34 1 5.1604 2.6117 -0.0020 35 1 6.8101 1.1143 -1.6622 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241013993.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:58 Heat of formation + Delta-G solvation = -57.258768 kcal Electronic energy + Delta-G solvation = -19919.978811 eV Core-core repulsion = 16847.237890 eV Total energy + Delta-G solvation = -3072.740922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91946 -40.09867 -37.77520 -37.43465 -35.56270 -32.83130 -31.68026 -30.75586 -29.19437 -27.97485 -26.97294 -23.85727 -23.46125 -22.64895 -21.45579 -19.48042 -18.95307 -18.25536 -17.42970 -16.85054 -16.57689 -16.29026 -16.18918 -15.96755 -15.24668 -14.78182 -14.70902 -14.45900 -14.20975 -13.55334 -13.30861 -13.24915 -12.91453 -12.83444 -12.73892 -12.56787 -12.35842 -12.13254 -11.88427 -11.56265 -11.36594 -11.09305 -11.03566 -9.84281 -9.54425 -9.39493 -8.68160 -8.43857 -6.22823 0.22227 0.42505 0.96657 1.15612 1.36235 1.47514 1.53047 2.22450 2.67730 2.85690 2.91776 3.40785 3.65227 3.96397 4.11428 4.21643 4.35449 4.42376 4.49234 4.54606 4.57447 4.66569 4.74381 4.95399 5.03634 5.11249 5.19907 5.37696 5.40292 5.49721 5.58701 5.67608 5.81144 5.83758 6.03662 6.13704 6.30561 6.49260 6.79145 6.92167 6.93568 7.22431 8.37855 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.015008 B = 0.007146 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.229324 B = 3917.584123 C = 5363.528004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.340 6.340 3 C 0.003 3.997 4 C -0.180 4.180 5 C -0.177 4.177 6 C -0.069 4.069 7 C -0.071 4.071 8 C -0.116 4.116 9 C -0.126 4.126 10 C -0.109 4.109 11 C -0.148 4.148 12 C 0.094 3.906 13 O -0.504 6.504 14 C -0.145 4.145 15 C 0.055 3.945 16 C -0.485 4.485 17 H 0.069 0.931 18 C 0.032 3.968 19 N -0.832 5.832 20 Si 0.979 3.021 21 H -0.264 1.264 22 H -0.264 1.264 23 H -0.259 1.259 24 H 0.050 0.950 25 H 0.111 0.889 26 H 0.055 0.945 27 H 0.132 0.868 28 H 0.121 0.879 29 H 0.113 0.887 30 H 0.151 0.849 31 H 0.162 0.838 32 H 0.150 0.850 33 H 0.398 0.602 34 H 0.106 0.894 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.502 9.603 3.019 10.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.255 6.255 3 C -0.042 4.042 4 C -0.199 4.199 5 C -0.196 4.196 6 C -0.070 4.070 7 C -0.071 4.071 8 C -0.135 4.135 9 C -0.144 4.144 10 C -0.126 4.126 11 C -0.166 4.166 12 C 0.049 3.951 13 O -0.316 6.316 14 C -0.165 4.165 15 C 0.053 3.947 16 C -0.515 4.515 17 H 0.087 0.913 18 C -0.181 4.181 19 N -0.459 5.459 20 Si 0.800 3.200 21 H -0.189 1.189 22 H -0.189 1.189 23 H -0.183 1.183 24 H 0.069 0.931 25 H 0.129 0.871 26 H 0.073 0.927 27 H 0.150 0.850 28 H 0.139 0.861 29 H 0.131 0.869 30 H 0.168 0.832 31 H 0.179 0.821 32 H 0.167 0.833 33 H 0.256 0.744 34 H 0.124 0.876 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.775 9.298 2.526 10.027 hybrid contribution -0.198 -0.704 0.168 0.750 sum -2.973 8.594 2.694 9.485 Atomic orbital electron populations 1.23100 0.78545 1.04236 1.01046 1.85900 1.21603 1.27938 1.90108 1.19495 0.92202 0.84102 1.08402 1.20887 0.99039 0.91969 1.08020 1.20393 0.92544 0.96240 1.10448 1.18605 0.93602 0.91339 1.03415 1.19510 0.98037 0.93595 0.95964 1.21301 0.95744 0.97997 0.98418 1.21385 1.00312 0.92505 1.00223 1.21397 0.96493 1.00525 0.94210 1.21598 0.98971 0.95315 1.00691 1.18726 0.93774 0.92674 0.89879 1.84798 1.18630 1.87551 1.40624 1.21065 0.98666 0.90474 1.06265 1.17385 0.89020 0.94436 0.93905 1.19491 0.98735 0.96519 1.36800 0.91253 1.26701 0.99876 0.99507 0.92025 1.69916 1.19963 1.32645 1.23337 0.85255 0.76972 0.77943 0.79836 1.18871 1.18852 1.18330 0.93122 0.87078 0.92692 0.85037 0.86120 0.86917 0.83162 0.82092 0.83259 0.74393 0.87632 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.81 113.37 1.11 1.95 16 2 O -0.34 -16.22 9.77 -89.15 -0.87 -17.09 16 3 C 0.00 0.13 6.72 23.11 0.16 0.29 16 4 C -0.18 -7.99 9.01 22.29 0.20 -7.79 16 5 C -0.18 -7.67 8.77 22.64 0.20 -7.47 16 6 C -0.07 -3.32 5.27 -20.08 -0.11 -3.43 16 7 C -0.07 -2.89 5.47 -19.95 -0.11 -3.00 16 8 C -0.12 -4.24 9.49 22.47 0.21 -4.03 16 9 C -0.13 -3.49 10.03 22.25 0.22 -3.27 16 10 C -0.11 -2.63 10.03 22.29 0.22 -2.40 16 11 C -0.15 -4.08 9.98 22.34 0.22 -3.86 16 12 C 0.09 3.34 6.61 22.73 0.15 3.49 16 13 O -0.50 -17.48 12.13 -91.90 -1.11 -18.59 16 14 C -0.14 -8.00 8.12 22.92 0.19 -7.81 16 15 C 0.05 3.16 5.57 -21.23 -0.12 3.04 16 16 C -0.49 -28.16 8.71 23.40 0.20 -27.96 16 17 H 0.07 4.01 7.65 -2.91 -0.02 3.99 16 18 C 0.03 1.73 5.15 85.24 0.44 2.17 16 19 N -0.83 -46.41 10.97 21.82 0.24 -46.17 16 20 Si 0.98 40.87 29.59 68.60 2.03 42.90 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 22 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 H 0.05 1.54 7.65 -2.39 -0.02 1.53 16 25 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 26 H 0.05 1.62 7.66 -2.39 -0.02 1.60 16 27 H 0.13 4.78 6.27 -2.91 -0.02 4.76 16 28 H 0.12 4.28 7.12 -2.91 -0.02 4.26 16 29 H 0.11 4.24 8.04 -2.91 -0.02 4.22 16 30 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 32 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 33 H 0.40 9.85 8.26 -74.06 -0.61 9.24 16 34 H 0.11 6.15 6.17 -2.91 -0.02 6.13 16 35 H 0.29 14.47 8.30 -92.71 -0.77 13.70 16 Total: -1.00 -71.30 301.93 3.99 -67.31 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.51 Total: 31.72 kcal Atomic # 6 Polarization: -63.28 SS G_CDS: 3.20 Total: -60.08 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.24 Total: -46.17 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -1.99 Total: -35.68 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -71.30 3.99 -67.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241013993.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.052 kcal (2) G-P(sol) polarization free energy of solvation -71.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds