Wall clock time and date at job start Mon Mar 30 2020 01:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35616 * 116.99771 * 2 1 4 4 C 1.39125 * 119.88741 * 0.23590 * 3 2 1 5 5 C 1.36429 * 120.44029 * 180.27857 * 4 3 2 6 6 C 1.40908 * 120.19041 * 359.74161 * 5 4 3 7 7 C 1.41243 * 120.11728 * 180.02562 * 6 5 4 8 8 H 1.07988 * 120.00501 * 24.58059 * 7 6 5 9 9 C 1.39860 * 119.99818 * 204.58723 * 7 6 5 10 10 N 1.30902 * 120.00089 * 17.95131 * 9 7 6 11 11 Si 1.86803 * 120.00038 * 197.95934 * 9 7 6 12 12 H 1.48497 * 109.47061 * 59.99441 * 11 9 7 13 13 H 1.48496 * 109.47488 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46855 * 299.99936 * 11 9 7 15 15 C 1.40616 * 119.76578 * 0.02562 * 6 5 4 16 16 C 1.38603 * 119.56570 * 359.97438 * 15 6 5 17 17 C 1.48286 * 120.09856 * 179.97438 * 16 15 6 18 18 C 1.39328 * 120.15021 * 64.99664 * 17 16 15 19 19 C 1.38006 * 119.92696 * 180.30075 * 18 17 16 20 20 C 1.38387 * 120.23845 * 359.42788 * 19 18 17 21 21 C 1.38195 * 120.30693 * 0.59582 * 20 19 18 22 22 C 1.38562 * 120.06448 * 359.68501 * 21 20 19 23 23 O 1.35857 * 120.11923 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.47010 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46953 * 299.99919 * 1 2 3 26 26 H 1.08999 * 109.46758 * 60.00029 * 1 2 3 27 27 H 1.08006 * 119.78128 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.90268 * 179.71848 * 5 4 3 29 29 H 0.97000 * 119.99936 * 179.97438 * 10 9 7 30 30 H 1.08000 * 120.21327 * 180.02562 * 15 6 5 31 31 H 1.08005 * 120.03493 * 0.02835 * 18 17 16 32 32 H 1.08009 * 119.87828 * 179.70115 * 19 18 17 33 33 H 1.08000 * 119.84307 * 180.32719 * 20 19 18 34 34 H 1.08004 * 119.96601 * 179.70029 * 21 20 19 35 35 H 0.96703 * 114.00044 * 269.97934 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2847 2.3736 0.0050 5 6 1.8922 3.5952 -0.0007 6 6 3.2983 3.6872 -0.0062 7 6 3.9256 4.9527 -0.0115 8 1 3.4050 5.8152 0.3774 9 6 5.2211 5.0888 -0.5206 10 7 5.7196 4.1612 -1.2982 11 14 6.2403 6.5941 -0.0908 12 1 6.4240 6.6637 1.3811 13 1 7.5670 6.4987 -0.7508 14 1 5.5400 7.8165 -0.5604 15 6 4.0746 2.5148 -0.0063 16 6 3.4471 1.2790 -0.0005 17 6 4.2542 0.0351 -0.0012 18 6 5.0673 -0.2721 1.0878 19 6 5.8213 -1.4280 1.0796 20 6 5.7641 -2.2898 -0.0016 21 6 4.9614 -1.9944 -1.0871 22 6 4.2034 -0.8345 -1.0948 23 8 3.4135 -0.5434 -2.1611 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2064 2.3108 0.0092 28 1 1.2937 4.4942 -0.0014 29 1 6.6179 4.2558 -1.6516 30 1 5.1528 2.5770 -0.0101 31 1 5.1107 0.3957 1.9355 32 1 6.4550 -1.6629 1.9221 33 1 6.3529 -3.1951 0.0010 34 1 4.9247 -2.6686 -1.9301 35 1 3.8546 -0.0236 -2.8470 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241014205.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:37 Heat of formation + Delta-G solvation = -54.568225 kcal Electronic energy + Delta-G solvation = -20206.496404 eV Core-core repulsion = 17133.872153 eV Total energy + Delta-G solvation = -3072.624251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.99070 -39.84032 -38.04574 -37.35969 -35.22155 -33.40638 -30.99806 -30.82287 -29.52624 -28.28125 -26.42016 -24.15750 -23.30197 -22.41903 -21.63147 -19.38348 -18.87402 -18.47423 -17.18657 -16.95306 -16.57913 -16.29814 -16.10154 -16.00314 -15.25756 -14.88489 -14.68332 -14.29909 -14.06944 -13.80317 -13.27686 -13.08354 -12.97752 -12.79228 -12.75372 -12.42378 -12.37235 -12.31945 -11.77252 -11.58156 -11.51133 -11.02440 -10.84233 -9.85631 -9.55451 -9.17829 -8.80325 -8.55401 -6.20472 0.33679 0.46380 0.99981 1.03364 1.39418 1.49663 1.54274 2.23168 2.69030 2.83801 2.87631 3.48141 3.67246 3.94705 4.12267 4.22735 4.30422 4.43993 4.47825 4.57152 4.64233 4.70840 4.74170 5.02592 5.08179 5.11289 5.23039 5.29687 5.45417 5.52748 5.56870 5.68462 5.73415 5.88777 6.02813 6.07981 6.27962 6.58923 6.83027 6.92588 6.97069 7.11942 8.38625 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.007161 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.385430 B = 3909.284594 C = 5032.170687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.331 6.331 3 C 0.029 3.971 4 C -0.176 4.176 5 C -0.201 4.201 6 C 0.052 3.948 7 C -0.501 4.501 8 H 0.074 0.926 9 C 0.036 3.964 10 N -0.829 5.829 11 Si 0.977 3.023 12 H -0.262 1.262 13 H -0.269 1.269 14 H -0.261 1.261 15 C -0.132 4.132 16 C -0.070 4.070 17 C -0.063 4.063 18 C -0.117 4.117 19 C -0.128 4.128 20 C -0.109 4.109 21 C -0.152 4.152 22 C 0.104 3.896 23 O -0.501 6.501 24 H 0.110 0.890 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.126 0.874 28 H 0.104 0.896 29 H 0.286 0.714 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.146 0.854 35 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.293 -9.275 1.278 9.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.246 6.246 3 C -0.016 4.016 4 C -0.194 4.194 5 C -0.220 4.220 6 C 0.050 3.950 7 C -0.531 4.531 8 H 0.092 0.908 9 C -0.177 4.177 10 N -0.456 5.456 11 Si 0.798 3.202 12 H -0.187 1.187 13 H -0.193 1.193 14 H -0.185 1.185 15 C -0.152 4.152 16 C -0.071 4.071 17 C -0.063 4.063 18 C -0.135 4.135 19 C -0.146 4.146 20 C -0.126 4.126 21 C -0.170 4.170 22 C 0.060 3.940 23 O -0.311 6.311 24 H 0.129 0.871 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.144 0.856 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.170 0.830 33 H 0.179 0.821 34 H 0.164 0.836 35 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 0.141 -9.835 1.433 9.939 hybrid contribution 0.248 1.522 -0.326 1.576 sum 0.389 -8.312 1.107 8.395 Atomic orbital electron populations 1.23033 0.78769 1.04005 1.00812 1.85904 1.21343 1.27080 1.90299 1.18689 0.90944 0.83911 1.08024 1.20649 0.98987 0.92166 1.07644 1.20816 0.94431 0.96240 1.10558 1.17833 0.91684 0.93859 0.91581 1.19615 1.00193 0.94995 1.38283 0.90786 1.26642 0.98468 1.00729 0.91910 1.69886 1.16993 1.35458 1.23279 0.85329 0.77293 0.78006 0.79549 1.18681 1.19326 1.18499 1.21145 0.98982 0.89998 1.05059 1.18000 0.89817 0.92487 1.06812 1.19335 0.97243 0.93957 0.95802 1.21301 0.96731 0.98280 0.97209 1.21363 0.99537 0.93711 0.99993 1.21374 0.98434 1.00343 0.92474 1.21568 0.97190 0.97090 1.01183 1.18720 0.92792 0.94213 0.88312 1.84747 1.40227 1.75644 1.30513 0.87135 0.93063 0.93450 0.85601 0.87821 0.90393 0.87217 0.86689 0.83002 0.82146 0.83633 0.75081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 9.80 113.37 1.11 2.01 16 2 O -0.33 -14.10 9.42 -89.28 -0.84 -14.94 16 3 C 0.03 1.35 6.40 23.01 0.15 1.50 16 4 C -0.18 -8.03 8.95 22.06 0.20 -7.84 16 5 C -0.20 -10.05 9.72 22.50 0.22 -9.83 16 6 C 0.05 2.88 5.57 -21.31 -0.12 2.76 16 7 C -0.50 -27.25 9.04 23.40 0.21 -27.04 16 8 H 0.07 3.88 7.91 -2.92 -0.02 3.86 16 9 C 0.04 1.85 5.13 85.22 0.44 2.28 16 10 N -0.83 -43.57 10.96 21.81 0.24 -43.33 16 11 Si 0.98 38.62 29.60 68.60 2.03 40.65 16 12 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 13 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 14 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 15 C -0.13 -7.09 8.36 22.94 0.19 -6.90 16 16 C -0.07 -3.45 4.95 -19.99 -0.10 -3.55 16 17 C -0.06 -2.70 4.95 -19.96 -0.10 -2.80 16 18 C -0.12 -4.38 9.73 22.48 0.22 -4.16 16 19 C -0.13 -3.68 10.03 22.25 0.22 -3.46 16 20 C -0.11 -2.82 10.03 22.30 0.22 -2.59 16 21 C -0.15 -4.60 9.98 22.34 0.22 -4.38 16 22 C 0.10 4.01 6.39 22.73 0.15 4.15 16 23 O -0.50 -19.30 12.45 -91.94 -1.15 -20.45 16 24 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 25 H 0.05 1.48 7.64 -2.39 -0.02 1.46 16 26 H 0.05 1.42 7.66 -2.39 -0.02 1.41 16 27 H 0.13 4.86 6.26 -2.91 -0.02 4.85 16 28 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 29 H 0.29 13.67 8.30 -92.71 -0.77 12.91 16 30 H 0.11 6.16 6.16 -2.91 -0.02 6.14 16 31 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 33 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 34 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 35 H 0.39 12.76 9.06 -74.06 -0.67 12.09 16 Total: -1.00 -65.87 304.20 3.96 -61.90 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: 0.45 Total: 36.01 kcal Atomic # 6 Polarization: -63.08 SS G_CDS: 3.23 Total: -59.85 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.24 Total: -43.33 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -1.99 Total: -35.38 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -65.87 3.96 -61.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241014205.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.335 kcal (2) G-P(sol) polarization free energy of solvation -65.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds