Wall clock time and date at job start Mon Mar 30 2020 01:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35884 * 116.99835 * 2 1 4 4 C 1.39503 * 119.77184 * 0.02562 * 3 2 1 5 5 C 1.37892 * 120.62979 * 180.29923 * 4 3 2 6 6 C 1.39253 * 120.15671 * 359.44753 * 5 4 3 7 7 C 1.47710 * 120.22869 * 180.27970 * 6 5 4 8 8 C 1.39669 * 120.18523 * 64.99738 * 7 6 5 9 9 C 1.37862 * 119.89971 * 179.72389 * 8 7 6 10 10 C 1.38511 * 120.28161 * 0.54848 * 9 8 7 11 11 C 1.38208 * 120.37612 * 359.72635 * 10 9 8 12 12 C 1.38542 * 120.09272 * 359.97438 * 11 10 9 13 13 O 1.35789 * 120.13675 * 179.97438 * 12 11 10 14 14 C 1.41950 * 119.54321 * 0.54664 * 6 5 4 15 15 C 1.40850 * 120.30385 * 179.70898 * 14 6 5 16 16 H 1.07995 * 120.00308 * 25.33683 * 15 14 6 17 17 C 1.40025 * 119.99691 * 205.33784 * 15 14 6 18 18 N 1.30798 * 120.00170 * 15.48557 * 17 15 14 19 19 Si 1.86802 * 119.99973 * 195.48410 * 17 15 14 20 20 H 1.48497 * 109.47107 * 60.00040 * 19 17 15 21 21 H 1.48498 * 109.47325 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46964 * 300.00499 * 19 17 15 23 23 C 1.37888 * 119.77263 * 180.02562 * 3 2 1 24 24 H 1.09007 * 109.46868 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47215 * 299.99319 * 1 2 3 26 26 H 1.08997 * 109.47488 * 60.00056 * 1 2 3 27 27 H 1.08006 * 119.68651 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.92290 * 179.70528 * 5 4 3 29 29 H 1.07999 * 120.05007 * 359.97438 * 8 7 6 30 30 H 1.08005 * 119.86134 * 180.29563 * 9 8 7 31 31 H 1.08004 * 119.81312 * 179.74042 * 10 9 8 32 32 H 1.08000 * 119.94961 * 180.02562 * 11 10 9 33 33 H 0.96700 * 113.99947 * 270.01533 * 13 12 11 34 34 H 0.97002 * 120.00206 * 179.97438 * 18 17 15 35 35 H 1.08005 * 120.08869 * 359.95177 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 1.2813 2.3777 0.0005 5 6 1.8888 3.6155 -0.0056 6 6 3.2779 3.7131 -0.0009 7 6 3.9303 5.0383 -0.0013 8 6 3.7788 5.8960 1.0906 9 6 4.3950 7.1292 1.0865 10 6 5.1550 7.5267 -0.0012 11 6 5.3080 6.6895 -1.0902 12 6 4.7007 5.4443 -1.0999 13 8 4.8500 4.6213 -2.1696 14 6 4.0627 2.5303 -0.0015 15 6 5.4689 2.6103 -0.0029 16 1 5.9604 3.4850 0.3966 17 6 6.2296 1.5557 -0.5225 18 7 5.6612 0.6461 -1.2710 19 14 8.0562 1.4480 -0.1465 20 1 8.2542 1.3439 1.3215 21 1 8.6283 0.2489 -0.8099 22 1 8.7384 2.6660 -0.6528 23 6 3.4231 1.2775 -0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2033 2.3109 0.0014 28 1 1.2859 4.5115 -0.0100 29 1 3.1831 5.5919 1.9386 30 1 4.2813 7.7900 1.9332 31 1 5.6309 8.4962 0.0018 32 1 5.9024 7.0062 -1.9344 33 1 4.1744 4.7366 -2.8518 34 1 6.1882 -0.0842 -1.6312 35 1 4.0091 0.3703 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241014627.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:00 Heat of formation + Delta-G solvation = -55.546730 kcal Electronic energy + Delta-G solvation = -20227.749637 eV Core-core repulsion = 17155.082955 eV Total energy + Delta-G solvation = -3072.666682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.79220 -40.04975 -37.90430 -37.23388 -35.39539 -32.68416 -31.56299 -30.69887 -29.53188 -27.64229 -26.95878 -23.85962 -23.17589 -22.62519 -21.36191 -19.51001 -18.96459 -17.93994 -17.27087 -16.86244 -16.47857 -16.32984 -16.21343 -16.02191 -15.16777 -14.78432 -14.63170 -14.43235 -14.08778 -13.50340 -13.16835 -13.03275 -12.96830 -12.81492 -12.66913 -12.55374 -12.39568 -12.09595 -11.79274 -11.57170 -11.32534 -11.05001 -10.90442 -9.64231 -9.34768 -9.27596 -8.72816 -8.42649 -6.29159 0.46313 0.56987 1.00465 1.18273 1.34106 1.44700 1.52281 2.19739 2.72087 2.80659 2.93971 3.61750 3.72575 4.19941 4.21671 4.31887 4.37085 4.46886 4.51725 4.57360 4.68883 4.74947 4.79382 5.08018 5.15384 5.16773 5.23958 5.37393 5.55878 5.58961 5.68203 5.83304 5.92587 5.97415 6.12602 6.18023 6.23647 6.52575 6.94823 6.97792 7.08787 7.14788 8.33884 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.009221 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.905584 B = 3035.688595 C = 4690.297831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.128 3.872 4 C -0.319 4.319 5 C -0.047 4.047 6 C -0.207 4.207 7 C -0.037 4.037 8 C -0.122 4.122 9 C -0.130 4.130 10 C -0.118 4.118 11 C -0.160 4.160 12 C 0.100 3.900 13 O -0.496 6.496 14 C 0.138 3.862 15 C -0.446 4.446 16 H 0.065 0.935 17 C 0.039 3.961 18 N -0.812 5.812 19 Si 0.968 3.032 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.264 1.264 23 C -0.234 4.234 24 H 0.115 0.885 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.126 0.874 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.135 0.865 33 H 0.387 0.613 34 H 0.286 0.714 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.873 8.279 1.276 9.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.083 3.917 4 C -0.338 4.338 5 C -0.066 4.066 6 C -0.208 4.208 7 C -0.038 4.038 8 C -0.140 4.140 9 C -0.147 4.147 10 C -0.135 4.135 11 C -0.179 4.179 12 C 0.056 3.944 13 O -0.306 6.306 14 C 0.136 3.864 15 C -0.475 4.475 16 H 0.083 0.917 17 C -0.177 4.177 18 N -0.437 5.437 19 Si 0.790 3.210 20 H -0.184 1.184 21 H -0.189 1.189 22 H -0.189 1.189 23 C -0.255 4.255 24 H 0.133 0.867 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.143 0.857 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.153 0.847 33 H 0.242 0.758 34 H 0.096 0.904 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.258 7.659 1.428 8.445 hybrid contribution 0.105 -0.373 -0.436 0.584 sum -3.154 7.286 0.991 8.001 Atomic orbital electron populations 1.23132 0.77647 1.04467 1.01474 1.85968 1.22782 1.28486 1.89566 1.19100 0.92111 0.83885 0.96560 1.20621 0.98633 0.91744 1.22850 1.20637 0.92982 0.96244 0.96693 1.18691 0.92596 0.91462 1.18080 1.19266 0.96557 0.93288 0.94674 1.21400 1.00921 0.94588 0.97068 1.21325 0.97935 0.95996 0.99487 1.21304 0.99175 1.00276 0.92779 1.21548 1.02128 0.93001 1.01187 1.18946 0.97287 0.89366 0.88850 1.84918 1.53925 1.61356 1.30364 1.17444 0.93230 0.89572 0.86196 1.19352 0.91457 1.02155 1.34500 0.91705 1.26673 1.05162 0.93780 0.92084 1.69889 1.40028 1.11054 1.22723 0.85461 0.77022 0.78795 0.79764 1.18351 1.18943 1.18890 1.20509 0.90632 0.98657 1.15686 0.86679 0.92427 0.92806 0.85663 0.86350 0.86033 0.83182 0.82863 0.84680 0.75787 0.90373 0.88122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.80 113.37 1.11 1.95 16 2 O -0.35 -15.84 10.48 -92.25 -0.97 -16.81 16 3 C 0.13 6.36 6.67 22.49 0.15 6.51 16 4 C -0.32 -14.02 9.02 22.49 0.20 -13.81 16 5 C -0.05 -2.08 9.71 22.43 0.22 -1.86 16 6 C -0.21 -10.01 4.99 -19.61 -0.10 -10.11 16 7 C -0.04 -1.59 4.38 -19.96 -0.09 -1.68 16 8 C -0.12 -4.34 9.74 22.53 0.22 -4.12 16 9 C -0.13 -3.68 10.03 22.25 0.22 -3.46 16 10 C -0.12 -3.22 10.04 22.33 0.22 -2.99 16 11 C -0.16 -5.25 9.97 22.34 0.22 -5.02 16 12 C 0.10 4.06 5.98 22.82 0.14 4.20 16 13 O -0.50 -21.47 12.06 -91.18 -1.10 -22.57 16 14 C 0.14 7.64 5.41 -21.13 -0.11 7.53 16 15 C -0.45 -24.77 7.36 23.34 0.17 -24.60 16 16 H 0.06 3.64 7.07 -2.91 -0.02 3.62 16 17 C 0.04 2.07 5.18 85.28 0.44 2.51 16 18 N -0.81 -44.61 10.87 21.84 0.24 -44.37 16 19 Si 0.97 40.81 29.59 68.60 2.03 42.84 16 20 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 21 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 23 C -0.23 -13.20 8.60 22.78 0.20 -13.00 16 24 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 25 H 0.06 1.62 7.64 -2.39 -0.02 1.60 16 26 H 0.05 1.55 7.65 -2.39 -0.02 1.53 16 27 H 0.13 4.62 6.25 -2.91 -0.02 4.60 16 28 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 29 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 32 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 33 H 0.39 13.34 9.06 -74.06 -0.67 12.67 16 34 H 0.29 14.36 8.30 -92.71 -0.77 13.59 16 35 H 0.10 6.09 6.13 -2.91 -0.02 6.07 16 Total: -1.00 -67.98 301.73 3.87 -64.12 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.45 Total: 34.74 kcal Atomic # 6 Polarization: -61.17 SS G_CDS: 3.22 Total: -57.95 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.24 Total: -44.37 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -2.07 Total: -39.38 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -67.98 3.87 -64.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241014627.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.569 kcal (2) G-P(sol) polarization free energy of solvation -67.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds