Wall clock time and date at job start Mon Mar 30 2020 01:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35611 * 117.00238 * 2 1 4 4 C 1.39134 * 119.88407 * 0.28240 * 3 2 1 5 5 C 1.36432 * 120.43869 * 180.27829 * 4 3 2 6 6 C 1.40911 * 120.18605 * 359.72022 * 5 4 3 7 7 C 1.41244 * 120.11550 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99517 * 334.52566 * 7 6 5 9 9 C 1.39853 * 119.99820 * 154.53442 * 7 6 5 10 10 N 1.30895 * 120.00277 * 343.02473 * 9 7 6 11 11 Si 1.86800 * 119.99868 * 163.03143 * 9 7 6 12 12 H 1.48497 * 109.47205 * 59.99559 * 11 9 7 13 13 H 1.48499 * 109.47383 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47171 * 299.99654 * 11 9 7 15 15 C 1.40609 * 119.76408 * 0.02562 * 6 5 4 16 16 C 1.38596 * 119.57196 * 359.97438 * 15 6 5 17 17 C 1.48319 * 120.09617 * 180.02562 * 16 15 6 18 18 C 1.39405 * 120.06283 * 130.27556 * 17 16 15 19 19 C 1.37909 * 119.92431 * 180.27346 * 18 17 16 20 20 C 1.38827 * 120.07078 * 359.45140 * 19 18 17 21 21 O 1.35883 * 119.93408 * 180.25246 * 20 19 18 22 22 C 1.38831 * 120.13533 * 0.27902 * 20 19 18 23 23 C 1.37906 * 120.06896 * 359.97438 * 22 20 19 24 24 H 1.09004 * 109.47570 * 59.99344 * 1 2 3 25 25 H 1.09000 * 109.47340 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46866 * 300.00160 * 1 2 3 27 27 H 1.08004 * 119.78250 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.90452 * 179.69890 * 5 4 3 29 29 H 0.96996 * 120.00170 * 179.97438 * 10 9 7 30 30 H 1.08001 * 120.21452 * 179.97438 * 15 6 5 31 31 H 1.07996 * 120.04000 * 0.02562 * 18 17 16 32 32 H 1.08004 * 119.96411 * 179.72774 * 19 18 17 33 33 H 0.96699 * 113.99991 * 89.99855 * 21 20 19 34 34 H 1.08003 * 119.96498 * 180.02562 * 22 20 19 35 35 H 1.08002 * 120.03418 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2846 2.3736 0.0059 5 6 1.8922 3.5952 0.0003 6 6 3.2983 3.6871 -0.0057 7 6 3.9258 4.9525 -0.0110 8 1 3.4075 5.8104 -0.4130 9 6 5.2183 5.0942 0.5042 10 7 5.7192 4.1663 1.2797 11 14 6.2297 6.6079 0.0856 12 1 5.5198 7.8237 0.5579 13 1 7.5539 6.5182 0.7518 14 1 6.4193 6.6854 -1.3852 15 6 4.0745 2.5146 -0.0064 16 6 3.4469 1.2789 -0.0006 17 6 4.2543 0.0347 -0.0007 18 6 3.9839 -0.9733 0.9236 19 6 4.7400 -2.1266 0.9246 20 6 5.7621 -2.2892 -0.0008 21 8 6.5020 -3.4289 -0.0005 22 6 6.0300 -1.2895 -0.9261 23 6 5.2809 -0.1317 -0.9288 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2064 2.3109 0.0101 28 1 1.2938 4.4942 0.0001 29 1 6.6157 4.2645 1.6367 30 1 5.1527 2.5766 -0.0114 31 1 3.1858 -0.8495 1.6405 32 1 4.5340 -2.9061 1.6432 33 1 6.1463 -4.1289 -0.5649 34 1 6.8255 -1.4190 -1.6450 35 1 5.4901 0.6458 -1.6486 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241062411.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:39 Heat of formation + Delta-G solvation = -58.193957 kcal Electronic energy + Delta-G solvation = -19771.967970 eV Core-core repulsion = 16699.186495 eV Total energy + Delta-G solvation = -3072.781474 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95140 -40.05362 -38.16519 -37.45359 -35.17295 -32.86409 -31.92739 -30.95122 -29.10989 -28.27412 -26.42204 -24.01501 -23.65789 -22.35393 -21.67391 -19.30678 -19.16069 -18.52360 -17.23214 -16.86408 -16.54000 -16.35923 -16.22265 -15.92425 -15.22066 -14.84131 -14.56039 -14.32854 -14.28902 -13.82636 -13.43954 -13.07149 -13.01328 -12.92790 -12.72658 -12.65223 -12.35876 -12.30053 -11.73267 -11.57842 -11.32583 -11.19630 -10.88298 -9.89802 -9.89292 -9.11941 -8.73959 -8.53122 -6.22461 0.14806 0.47882 1.00422 1.05788 1.39454 1.49976 1.53766 2.22925 2.65137 2.80671 2.87277 3.35401 3.66971 3.94607 4.06032 4.09804 4.30057 4.46521 4.50463 4.51259 4.66043 4.68463 4.78720 4.97638 5.06218 5.12103 5.21391 5.26962 5.35540 5.47924 5.51367 5.63907 5.76455 5.85575 5.97923 6.07970 6.26950 6.57257 6.81038 6.92406 6.96350 7.09015 8.38575 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.015260 B = 0.006589 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.478947 B = 4248.263253 C = 5811.665102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.333 6.333 3 C 0.018 3.982 4 C -0.170 4.170 5 C -0.200 4.200 6 C 0.053 3.947 7 C -0.500 4.500 8 H 0.076 0.924 9 C 0.035 3.965 10 N -0.832 5.832 11 Si 0.978 3.022 12 H -0.260 1.260 13 H -0.271 1.271 14 H -0.261 1.261 15 C -0.133 4.133 16 C -0.078 4.078 17 C -0.039 4.039 18 C -0.089 4.089 19 C -0.145 4.145 20 C 0.094 3.906 21 O -0.504 6.504 22 C -0.146 4.146 23 C -0.109 4.109 24 H 0.050 0.950 25 H 0.116 0.884 26 H 0.050 0.950 27 H 0.131 0.869 28 H 0.106 0.894 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.148 0.852 33 H 0.408 0.592 34 H 0.146 0.854 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.726 -10.366 -2.958 11.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.248 6.248 3 C -0.027 4.027 4 C -0.189 4.189 5 C -0.220 4.220 6 C 0.051 3.949 7 C -0.530 4.530 8 H 0.094 0.906 9 C -0.179 4.179 10 N -0.459 5.459 11 Si 0.799 3.201 12 H -0.184 1.184 13 H -0.196 1.196 14 H -0.185 1.185 15 C -0.152 4.152 16 C -0.079 4.079 17 C -0.039 4.039 18 C -0.107 4.107 19 C -0.163 4.163 20 C 0.049 3.951 21 O -0.317 6.317 22 C -0.164 4.164 23 C -0.128 4.128 24 H 0.069 0.931 25 H 0.134 0.866 26 H 0.069 0.931 27 H 0.149 0.851 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.138 0.862 32 H 0.166 0.834 33 H 0.267 0.733 34 H 0.164 0.836 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.094 -10.314 -2.425 10.800 hybrid contribution -0.152 0.917 -0.288 0.973 sum -2.246 -9.397 -2.713 10.036 Atomic orbital electron populations 1.23099 0.78367 1.04391 1.01060 1.85868 1.21686 1.26743 1.90500 1.18666 0.90749 0.84220 1.09028 1.20673 0.99181 0.91980 1.07030 1.20859 0.94348 0.96498 1.10251 1.17858 0.91840 0.93800 0.91367 1.19644 1.00348 0.95280 1.37713 0.90588 1.26664 0.98466 1.00798 0.91924 1.69892 1.17012 1.35575 1.23430 0.85316 0.77252 0.77958 0.79584 1.18391 1.19558 1.18522 1.21205 0.99170 0.90176 1.04694 1.18192 0.90034 0.92723 1.06912 1.18949 0.95477 0.93429 0.96056 1.21073 0.99011 0.92772 0.97851 1.21469 0.95434 0.98734 1.00675 1.18446 0.92307 0.88498 0.95801 1.84758 1.51598 1.23836 1.71504 1.21443 1.00877 0.94019 1.00048 1.21184 0.95217 0.97752 0.98615 0.93105 0.86591 0.93139 0.85100 0.87630 0.90413 0.87195 0.86188 0.83417 0.73281 0.83616 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.80 113.37 1.11 1.80 16 2 O -0.33 -12.62 8.81 -89.22 -0.79 -13.40 16 3 C 0.02 0.78 6.62 23.01 0.15 0.94 16 4 C -0.17 -7.37 8.95 22.06 0.20 -7.17 16 5 C -0.20 -9.72 9.72 22.50 0.22 -9.50 16 6 C 0.05 2.89 5.56 -21.31 -0.12 2.78 16 7 C -0.50 -27.04 9.04 23.40 0.21 -26.83 16 8 H 0.08 3.94 7.90 -2.91 -0.02 3.92 16 9 C 0.04 1.80 5.14 85.22 0.44 2.23 16 10 N -0.83 -44.56 10.96 21.81 0.24 -44.32 16 11 Si 0.98 38.85 29.59 68.60 2.03 40.88 16 12 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 13 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 14 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 15 C -0.13 -7.08 8.12 22.93 0.19 -6.90 16 16 C -0.08 -3.74 5.48 -19.98 -0.11 -3.85 16 17 C -0.04 -1.65 5.27 -20.03 -0.11 -1.75 16 18 C -0.09 -3.30 8.77 22.47 0.20 -3.11 16 19 C -0.14 -4.46 9.97 22.33 0.22 -4.24 16 20 C 0.09 2.78 6.71 22.55 0.15 2.93 16 21 O -0.50 -11.93 13.50 -92.24 -1.24 -13.18 16 22 C -0.15 -4.59 9.97 22.33 0.22 -4.37 16 23 C -0.11 -4.18 9.50 22.47 0.21 -3.96 16 24 H 0.05 1.30 7.66 -2.38 -0.02 1.28 16 25 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.05 1.29 7.63 -2.39 -0.02 1.28 16 27 H 0.13 4.67 6.26 -2.91 -0.02 4.65 16 28 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 29 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 30 H 0.11 6.18 6.17 -2.91 -0.02 6.16 16 31 H 0.12 4.45 7.67 -2.91 -0.02 4.43 16 32 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 33 H 0.41 5.17 9.06 -74.06 -0.67 4.50 16 34 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.12 4.52 8.04 -2.91 -0.02 4.50 16 Total: -1.00 -64.68 303.82 3.88 -60.81 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.45 Total: 30.21 kcal Atomic # 6 Polarization: -64.19 SS G_CDS: 3.19 Total: -61.00 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.24 Total: -44.32 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -2.03 Total: -26.58 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -64.68 3.88 -60.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241062411.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.613 kcal (2) G-P(sol) polarization free energy of solvation -64.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds